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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 20:45:31 UTC

Update Date

2022-03-07 02:54:37 UTC

HMDB ID

HMDB0035742

Secondary Accession Numbers

HMDB35742

Metabolite Identification

Common Name

Absinthin

Description

Absinthin belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units. Based on a literature review a significant number of articles have been published on Absinthin.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 01081304062D          

 44 50  0  0  0  0            999 V2000
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   -1.7157   -5.8817    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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 16 42  1  6  0  0  0
 21 43  1  1  0  0  0
 20 44  1  6  0  0  0
M  END

HMDB0035742
     RDKit          3D
Absinthin
 76 82  0  0  0  0  0  0  0  0999 V2000
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 36 76  1  0
M  END


  Mrv0541 01081304062D          

 44 50  0  0  0  0            999 V2000
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    3.6352   -3.8772    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3497   -4.2897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8956   -7.8395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3514   -5.4323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9389   -4.1627    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9084   -5.6698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0483   -6.2217    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4033   -5.0862    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4752   -4.1868    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9725   -4.1874    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9519   -6.6613    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0950   -5.2737    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5964   -5.8725    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -6.7327    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  5  1  0  0  0  0
 10  6  1  0  0  0  0
  6  1  1  0  0  0  0
  3  7  1  0  0  0  0
  3  4  1  0  0  0  0
  9  4  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  5 11  2  0  0  0  0
 11 14  1  0  0  0  0
 10 12  1  0  0  0  0
 10  5  1  0  0  0  0
 13 12  1  0  0  0  0
 14 15  1  0  0  0  0
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 12 14  1  0  0  0  0
 17 16  1  0  0  0  0
 16 15  1  0  0  0  0
 15 21  1  0  0  0  0
 20 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 17  1  0  0  0  0
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  8 25  2  0  0  0  0
 23 26  2  0  0  0  0
  7 27  1  1  0  0  0
  6 28  1  1  0  0  0
  6 29  1  6  0  0  0
 11 30  1  0  0  0  0
 17 31  1  6  0  0  0
 17 32  1  1  0  0  0
 24 33  1  6  0  0  0
 15 34  1  1  0  0  0
 13 35  1  1  0  0  0
 35 34  2  0  0  0  0
 34 36  1  0  0  0  0
  3 37  1  1  0  0  0
  4 38  1  1  0  0  0
 12 39  1  6  0  0  0
 10 40  1  1  0  0  0
 14 41  1  6  0  0  0
 16 42  1  6  0  0  0
 21 43  1  1  0  0  0
 20 44  1  6  0  0  0
M  END
> <DATABASE_ID>
HMDB0035742

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@]12CC[C@](C)(O)[C@@]3([H])C(=C(C)[C@@]4([H])[C@]3([H])[C@H]3C=C(C)[C@@]44[C@@]5([H])OC(=O)[C@@H](C)[C@]5([H])CC[C@](C)(O)[C@]34[H])[C@]1([H])OC(=O)[C@H]2C

> <INCHI_IDENTIFIER>
InChI=1S/C30H40O6/c1-12-11-18-20-21(30(12)24(18)29(6,34)10-8-17-14(3)27(32)36-25(17)30)15(4)19-22(20)28(5,33)9-7-16-13(2)26(31)35-23(16)19/h11,13-14,16-18,20-25,33-34H,7-10H2,1-6H3/t13-,14-,16-,17-,18+,20-,21-,22-,23+,24-,25-,28-,29-,30+/m0/s1

> <INCHI_KEY>
PZHWYURJZAPXAN-NTGBWREQSA-N

> <FORMULA>
C30H40O6

> <MOLECULAR_WEIGHT>
496.635

> <EXACT_MASS>
496.282489012

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
54.99085066089181

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R,5R,8S,9S,12S,13R,14S,15S,16R,17S,20S,21S,24S)-12,17-dihydroxy-3,8,12,17,21,25-hexamethyl-6,23-dioxaheptacyclo[13.9.2.0¹,¹⁶.0²,¹⁴.0⁴,¹³.0⁵,⁹.0²⁰,²⁴]hexacosa-3,25-diene-7,22-dione

> <ALOGPS_LOGP>
3.38

> <JCHEM_LOGP>
2.383838436333334

> <ALOGPS_LOGS>
-4.54

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.021445069423457

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.418737089207383

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9139101124541504

> <JCHEM_POLAR_SURFACE_AREA>
93.06

> <JCHEM_REFRACTIVITY>
133.9821

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.44e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,5R,8S,9S,12S,13R,14S,15S,16R,17S,20S,21S,24S)-12,17-dihydroxy-3,8,12,17,21,25-hexamethyl-6,23-dioxaheptacyclo[13.9.2.0¹,¹⁶.0²,¹⁴.0⁴,¹³.0⁵,⁹.0²⁰,²⁴]hexacosa-3,25-diene-7,22-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0035742
     RDKit          3D
Absinthin
 76 82  0  0  0  0  0  0  0  0999 V2000
   -1.1191    3.1340    0.7836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0092    1.6651    0.8240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4050    0.9708    1.8169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7038   -0.4772    1.6803 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0643   -1.1009    0.5312 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5281   -1.0961    0.6792 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9544    0.1559    0.0067 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9555    0.6844   -0.7006 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1683    1.9532   -1.4622 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2762   -0.1344   -0.5975 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4823    0.6065   -0.1138 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4734    1.0047   -1.0948 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0166    1.1373   -2.4207 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.0953   -0.2533    3.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2063    1.5709    1.7226 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0465   -0.3811    0.9300 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3250    0.7386    0.1204 C   0  0  2  0  0  0  0  0  0  0  0  0
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    5.9303    2.0781   -1.6374 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6449    0.5157    0.1872 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1642    1.2781    1.3587 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3598   -0.2569    0.5258 C   0  0  2  0  0  0  0  0  0  0  0  0
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    3.4745   -2.5610    0.2120 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0615   -2.2636   -0.1646 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2393   -3.5111    0.0944 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9171   -1.9614   -1.5184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3511    3.5890    1.7821 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3960   -2.0945    0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8450    2.6445   -0.9113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4752   -0.6831   -1.5445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9519    1.9700   -0.8013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9959    1.0135   -2.5474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8426   -1.7553   -2.9739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7262   -0.9396   -4.2885 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5481   -1.3509   -2.6821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2822   -1.0345   -1.1983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6447   -0.1658   -0.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8623    1.3703   -0.1143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2550    0.0466    1.8425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5024   -1.4112    1.1445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6988   -1.2701    3.2441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1107   -0.2419    3.5906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4872    0.4746    3.7820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1406    1.9048    1.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193   -1.3672    0.5081 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3506    1.5603    0.8750 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4396   -0.2054   -0.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2900    1.3415    1.3429 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7150    2.2575    1.5100 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9453    0.6618    2.2761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3228   -0.5298    1.5836 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2690   -1.2938   -1.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4411   -1.9142   -0.2203 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7646   -3.5170   -0.2695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5621   -2.5674    1.3075 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9228   -4.3902   -0.0950 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8298   -3.5384    1.1120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4469   -3.6215   -0.6988 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2751   -1.0973   -1.7770 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
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 12 13  1  0
 13 14  1  0
 14 15  2  0
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 16 17  1  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  1
 21 24  1  0
  7 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  1  0
 34 36  1  6
 11  2  1  1
 18 12  1  0
 31 25  1  0
 24  4  1  0
 10  5  1  0
 24 11  1  0
 34  6  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  3 40  1  0
  4 41  1  1
  5 42  1  6
  6 43  1  1
  9 44  1  0
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 12 48  1  1
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 24 62  1  6
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 32 70  1  0
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 33 72  1  0
 35 73  1  0
 35 74  1  0
 35 75  1  0
 36 76  1  0
M  END

HEADER    PROTEIN                                 08-JAN-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-JAN-13         0                                  
HETATM    1  C   UNK     0      -0.753  -7.574   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.957  -8.534   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.957 -10.074   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.753 -11.034   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.749 -10.692   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.749  -7.917   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.203 -10.979   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.727 -12.444   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.187 -12.444   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.417  -9.304   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.893 -11.722   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.906  -9.446   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.152  -8.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.227 -10.952   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.922 -10.910   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.398  -9.446   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.786  -8.777   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.516 -10.947   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.173  -9.446   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.556 -12.151   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.016 -12.151   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       5.317 -13.523   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.406 -14.612   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.778 -13.913   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -3.632 -13.690   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       6.165 -16.133   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -4.667 -10.503   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.709  -6.713   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       0.350  -6.429   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       1.732 -13.254   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.786  -7.237   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       8.119  -8.007   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       9.138 -14.634   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.256 -10.140   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.486  -7.770   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       7.296 -10.584   0.000  0.00  0.00           C+0
HETATM   37  H   UNK     0      -1.957 -11.614   0.000  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.753  -9.494   0.000  0.00  0.00           H+0
HETATM   39  H   UNK     0       2.754  -7.815   0.000  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.815  -7.816   0.000  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.644 -12.434   0.000  0.00  0.00           H+0
HETATM   42  H   UNK     0       3.911  -9.844   0.000  0.00  0.00           H+0
HETATM   43  H   UNK     0       6.713 -10.962   0.000  0.00  0.00           H+0
HETATM   44  H   UNK     0       9.038 -12.568   0.000  0.00  0.00           H+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    7    4   37                                             
CONECT    4    5    3    9   38                                             
CONECT    5    4   11   10                                                  
CONECT    6   10    1   28   29                                             
CONECT    7    3    8   27                                                  
CONECT    8    7    9   25                                                  
CONECT    9    4    8                                                       
CONECT   10    6   12    5   40                                             
CONECT   11    5   14   30                                                  
CONECT   12   10   13   14   39                                             
CONECT   13   12   16   35                                                  
CONECT   14   11   15   12   41                                             
CONECT   15   14   16   21   34                                             
CONECT   16   13   17   15   42                                             
CONECT   17   16   19   31   32                                             
CONECT   18   20   19                                                       
CONECT   19   18   17                                                       
CONECT   20   18   24   21   44                                             
CONECT   21   15   22   20   43                                             
CONECT   22   21   23                                                       
CONECT   23   22   24   26                                                  
CONECT   24   23   20   33                                                  
CONECT   25    8                                                            
CONECT   26   23                                                            
CONECT   27    7                                                            
CONECT   28    6                                                            
CONECT   29    6                                                            
CONECT   30   11                                                            
CONECT   31   17                                                            
CONECT   32   17                                                            
CONECT   33   24                                                            
CONECT   34   15   35   36                                                  
CONECT   35   13   34                                                       
CONECT   36   34                                                            
CONECT   37    3                                                            
CONECT   38    4                                                            
CONECT   39   12                                                            
CONECT   40   10                                                            
CONECT   41   14                                                            
CONECT   42   16                                                            
CONECT   43   21                                                            
CONECT   44   20                                                            
MASTER        0    0    0    0    0    0    0    0   44    0  100    0
END

COMPND    HMDB0035742
HETATM    1  C1  UNL     1      -1.119   3.134   0.784  1.00  0.00           C  
HETATM    2  C2  UNL     1      -1.009   1.665   0.824  1.00  0.00           C  
HETATM    3  C3  UNL     1      -0.405   0.971   1.817  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.704  -0.477   1.680  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.064  -1.101   0.531  1.00  0.00           C  
HETATM    6  C6  UNL     1       1.528  -1.096   0.679  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.954   0.156   0.007  1.00  0.00           C  
HETATM    8  C8  UNL     1       0.956   0.684  -0.701  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.168   1.953  -1.462  1.00  0.00           C  
HETATM   10  C10 UNL     1      -0.276  -0.134  -0.598  1.00  0.00           C  
HETATM   11  C11 UNL     1      -1.482   0.607  -0.114  1.00  0.00           C  
HETATM   12  C12 UNL     1      -2.473   1.005  -1.095  1.00  0.00           C  
HETATM   13  O1  UNL     1      -2.017   1.137  -2.421  1.00  0.00           O  
HETATM   14  C13 UNL     1      -2.994   0.775  -3.330  1.00  0.00           C  
HETATM   15  O2  UNL     1      -2.840   0.858  -4.574  1.00  0.00           O  
HETATM   16  C14 UNL     1      -4.172   0.303  -2.571  1.00  0.00           C  
HETATM   17  C15 UNL     1      -4.649  -1.001  -3.202  1.00  0.00           C  
HETATM   18  C16 UNL     1      -3.622  -0.002  -1.171  1.00  0.00           C  
HETATM   19  C17 UNL     1      -4.713   0.291  -0.190  1.00  0.00           C  
HETATM   20  C18 UNL     1      -4.462  -0.321   1.170  1.00  0.00           C  
HETATM   21  C19 UNL     1      -3.134   0.185   1.749  1.00  0.00           C  
HETATM   22  C20 UNL     1      -3.095  -0.253   3.196  1.00  0.00           C  
HETATM   23  O3  UNL     1      -3.206   1.571   1.723  1.00  0.00           O  
HETATM   24  C21 UNL     1      -2.046  -0.381   0.930  1.00  0.00           C  
HETATM   25  C22 UNL     1       3.325   0.739   0.120  1.00  0.00           C  
HETATM   26  O4  UNL     1       3.825   1.219  -1.112  1.00  0.00           O  
HETATM   27  C23 UNL     1       5.194   1.348  -0.933  1.00  0.00           C  
HETATM   28  O5  UNL     1       5.930   2.078  -1.637  1.00  0.00           O  
HETATM   29  C24 UNL     1       5.645   0.516   0.187  1.00  0.00           C  
HETATM   30  C25 UNL     1       6.164   1.278   1.359  1.00  0.00           C  
HETATM   31  C26 UNL     1       4.360  -0.257   0.526  1.00  0.00           C  
HETATM   32  C27 UNL     1       4.398  -1.493  -0.331  1.00  0.00           C  
HETATM   33  C28 UNL     1       3.475  -2.561   0.212  1.00  0.00           C  
HETATM   34  C29 UNL     1       2.061  -2.264  -0.165  1.00  0.00           C  
HETATM   35  C30 UNL     1       1.239  -3.511   0.094  1.00  0.00           C  
HETATM   36  O6  UNL     1       1.917  -1.961  -1.518  1.00  0.00           O  
HETATM   37  H1  UNL     1      -1.351   3.589   1.782  1.00  0.00           H  
HETATM   38  H2  UNL     1      -0.146   3.621   0.498  1.00  0.00           H  
HETATM   39  H3  UNL     1      -1.867   3.467   0.062  1.00  0.00           H  
HETATM   40  H4  UNL     1       0.198   1.423   2.581  1.00  0.00           H  
HETATM   41  H5  UNL     1      -0.748  -1.045   2.579  1.00  0.00           H  
HETATM   42  H6  UNL     1      -0.396  -2.094   0.356  1.00  0.00           H  
HETATM   43  H7  UNL     1       1.918  -1.203   1.697  1.00  0.00           H  
HETATM   44  H8  UNL     1       1.675   1.748  -2.450  1.00  0.00           H  
HETATM   45  H9  UNL     1       0.252   2.488  -1.681  1.00  0.00           H  
HETATM   46  H10 UNL     1       1.845   2.644  -0.911  1.00  0.00           H  
HETATM   47  H11 UNL     1      -0.475  -0.683  -1.545  1.00  0.00           H  
HETATM   48  H12 UNL     1      -2.952   1.970  -0.801  1.00  0.00           H  
HETATM   49  H13 UNL     1      -4.996   1.013  -2.547  1.00  0.00           H  
HETATM   50  H14 UNL     1      -3.843  -1.755  -2.974  1.00  0.00           H  
HETATM   51  H15 UNL     1      -4.726  -0.940  -4.288  1.00  0.00           H  
HETATM   52  H16 UNL     1      -5.548  -1.351  -2.682  1.00  0.00           H  
HETATM   53  H17 UNL     1      -3.282  -1.035  -1.198  1.00  0.00           H  
HETATM   54  H18 UNL     1      -5.645  -0.166  -0.576  1.00  0.00           H  
HETATM   55  H19 UNL     1      -4.862   1.370  -0.114  1.00  0.00           H  
HETATM   56  H20 UNL     1      -5.255   0.047   1.843  1.00  0.00           H  
HETATM   57  H21 UNL     1      -4.502  -1.411   1.145  1.00  0.00           H  
HETATM   58  H22 UNL     1      -2.699  -1.270   3.244  1.00  0.00           H  
HETATM   59  H23 UNL     1      -4.111  -0.242   3.591  1.00  0.00           H  
HETATM   60  H24 UNL     1      -2.487   0.475   3.782  1.00  0.00           H  
HETATM   61  H25 UNL     1      -4.141   1.905   1.753  1.00  0.00           H  
HETATM   62  H26 UNL     1      -2.219  -1.367   0.508  1.00  0.00           H  
HETATM   63  H27 UNL     1       3.351   1.560   0.875  1.00  0.00           H  
HETATM   64  H28 UNL     1       6.440  -0.205  -0.140  1.00  0.00           H  
HETATM   65  H29 UNL     1       7.290   1.341   1.343  1.00  0.00           H  
HETATM   66  H30 UNL     1       5.715   2.258   1.510  1.00  0.00           H  
HETATM   67  H31 UNL     1       5.945   0.662   2.276  1.00  0.00           H  
HETATM   68  H32 UNL     1       4.323  -0.530   1.584  1.00  0.00           H  
HETATM   69  H33 UNL     1       4.269  -1.294  -1.395  1.00  0.00           H  
HETATM   70  H34 UNL     1       5.441  -1.914  -0.220  1.00  0.00           H  
HETATM   71  H35 UNL     1       3.765  -3.517  -0.270  1.00  0.00           H  
HETATM   72  H36 UNL     1       3.562  -2.567   1.308  1.00  0.00           H  
HETATM   73  H37 UNL     1       1.923  -4.390  -0.095  1.00  0.00           H  
HETATM   74  H38 UNL     1       0.830  -3.538   1.112  1.00  0.00           H  
HETATM   75  H39 UNL     1       0.447  -3.621  -0.699  1.00  0.00           H  
HETATM   76  H40 UNL     1       2.275  -1.097  -1.777  1.00  0.00           H  
CONECT    1    2   37   38   39
CONECT    2    3    3   11
CONECT    3    4   40
CONECT    4    5   24   41
CONECT    5    6   10   42
CONECT    6    7   34   43
CONECT    7    8    8   25
CONECT    8    9   10
CONECT    9   44   45   46
CONECT   10   11   47
CONECT   11   12   24
CONECT   12   13   18   48
CONECT   13   14
CONECT   14   15   15   16
CONECT   16   17   18   49
CONECT   17   50   51   52
CONECT   18   19   53
CONECT   19   20   54   55
CONECT   20   21   56   57
CONECT   21   22   23   24
CONECT   22   58   59   60
CONECT   23   61
CONECT   24   62
CONECT   25   26   31   63
CONECT   26   27
CONECT   27   28   28   29
CONECT   29   30   31   64
CONECT   30   65   66   67
CONECT   31   32   68
CONECT   32   33   69   70
CONECT   33   34   71   72
CONECT   34   35   36
CONECT   35   73   74   75
CONECT   36   76
END

HMDB0035742
     RDKit          3D
Absinthin
 76 82  0  0  0  0  0  0  0  0999 V2000
   -1.1191    3.1340    0.7836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0092    1.6651    0.8240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4050    0.9708    1.8169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7038   -0.4772    1.6803 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0643   -1.1009    0.5312 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5281   -1.0961    0.6792 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9544    0.1559    0.0067 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9555    0.6844   -0.7006 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1683    1.9532   -1.4622 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2762   -0.1344   -0.5975 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4823    0.6065   -0.1138 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4734    1.0047   -1.0948 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0166    1.1373   -2.4207 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9938    0.7746   -3.3304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8398    0.8575   -4.5743 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1717    0.3028   -2.5707 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6486   -1.0010   -3.2021 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6216   -0.0021   -1.1706 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7133    0.2906   -0.1900 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4616   -0.3213    1.1696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1337    0.1846    1.7493 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0953   -0.2533    3.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2063    1.5709    1.7226 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0465   -0.3811    0.9300 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3250    0.7386    0.1204 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8254    1.2187   -1.1118 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1944    1.3481   -0.9328 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9303    2.0781   -1.6374 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6449    0.5157    0.1872 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1642    1.2781    1.3587 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3598   -0.2569    0.5258 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3982   -1.4933   -0.3312 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4745   -2.5610    0.2120 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0615   -2.2636   -0.1646 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2393   -3.5111    0.0944 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9171   -1.9614   -1.5184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3511    3.5890    1.7821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1457    3.6206    0.4982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8667    3.4674    0.0617 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1983    1.4229    2.5814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7479   -1.0446    2.5793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3960   -2.0945    0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9181   -1.2032    1.6969 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6752    1.7484   -2.4497 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2519    2.4876   -1.6806 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8450    2.6445   -0.9113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4752   -0.6831   -1.5445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9519    1.9700   -0.8013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9959    1.0135   -2.5474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8426   -1.7553   -2.9739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7262   -0.9396   -4.2885 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5481   -1.3509   -2.6821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2822   -1.0345   -1.1983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6447   -0.1658   -0.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8623    1.3703   -0.1143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2550    0.0466    1.8425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5024   -1.4112    1.1445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6988   -1.2701    3.2441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1107   -0.2419    3.5906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4872    0.4746    3.7820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1406    1.9048    1.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193   -1.3672    0.5081 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3506    1.5603    0.8750 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4396   -0.2054   -0.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2900    1.3415    1.3429 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7150    2.2575    1.5100 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9453    0.6618    2.2761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3228   -0.5298    1.5836 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2690   -1.2938   -1.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4411   -1.9142   -0.2203 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7646   -3.5170   -0.2695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5621   -2.5674    1.3075 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9228   -4.3902   -0.0950 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8298   -3.5384    1.1120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4469   -3.6215   -0.6988 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2751   -1.0973   -1.7770 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  1
 21 24  1  0
  7 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  1  0
 34 36  1  6
 11  2  1  1
 18 12  1  0
 31 25  1  0
 24  4  1  0
 10  5  1  0
 24 11  1  0
 34  6  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  3 40  1  0
  4 41  1  1
  5 42  1  6
  6 43  1  1
  9 44  1  0
  9 45  1  0
  9 46  1  0
 10 47  1  6
 12 48  1  1
 16 49  1  1
 17 50  1  0
 17 51  1  0
 17 52  1  0
 18 53  1  6
 19 54  1  0
 19 55  1  0
 20 56  1  0
 20 57  1  0
 22 58  1  0
 22 59  1  0
 22 60  1  0
 23 61  1  0
 24 62  1  6
 25 63  1  1
 29 64  1  6
 30 65  1  0
 30 66  1  0
 30 67  1  0
 31 68  1  1
 32 69  1  0
 32 70  1  0
 33 71  1  0
 33 72  1  0
 35 73  1  0
 35 74  1  0
 35 75  1  0
 36 76  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(+)-Absinthin	HMDB
Absynthin	HMDB

Chemical Formula

C₃₀H₄₀O₆

Average Molecular Weight

496.635

Monoisotopic Molecular Weight

496.282489012

IUPAC Name

(1R,2R,5R,8S,9S,12S,13R,14S,15S,16R,17S,20S,21S,24S)-12,17-dihydroxy-3,8,12,17,21,25-hexamethyl-6,23-dioxaheptacyclo[13.9.2.0¹,¹⁶.0²,¹⁴.0⁴,¹³.0⁵,⁹.0²⁰,²⁴]hexacosa-3,25-diene-7,22-dione

Traditional Name

CAS Registry Number

1362-42-1

SMILES

[H][C@@]12CC[C@](C)(O)[C@@]3([H])C(=C(C)[C@@]4([H])[C@]3([H])[C@H]3C=C(C)[C@@]44[C@@]5([H])OC(=O)[C@@H](C)[C@]5([H])CC[C@](C)(O)[C@]34[H])[C@]1([H])OC(=O)[C@H]2C

InChI Identifier

InChI=1S/C30H40O6/c1-12-11-18-20-21(30(12)24(18)29(6,34)10-8-17-14(3)27(32)36-25(17)30)15(4)19-22(20)28(5,33)9-7-16-13(2)26(31)35-23(16)19/h11,13-14,16-18,20-25,33-34H,7-10H2,1-6H3/t13-,14-,16-,17-,18+,20-,21-,22-,23+,24-,25-,28-,29-,30+/m0/s1

InChI Key

PZHWYURJZAPXAN-NTGBWREQSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesterterpenoids

Direct Parent

Sesterterpenoids

Alternative Parents

Substituents

Sesterterpenoid
Dicarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Tertiary alcohol
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Carbonyl group
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Organoleptic effect

Taste

Bitter

Disposition

Biological location

Cellular substructure

Extracellular (HMDB: HMDB0035742)
Membrane (HMDB: HMDB0035742)

Source

Endogenous

Endogenous (HMDB: HMDB0035742)

Exogenous

Exogenous (HMDB: HMDB0035742)

Food

Beverage

Fortified wines

Vermouth (FooDB: FOOD00631)

Alcoholic beverage

Alcoholic beverages (FooDB: FOOD00854)

Herb and spice

Herbs and Spices (FooDB: FOOD00866)

Process

Not Available

Role

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	182 - 183 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.014 g/L	ALOGPS
logP	3.38	ALOGPS
logP	2.38	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	14.42	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	93.06 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	133.98 m³·mol⁻¹	ChemAxon
Polarizability	54.99 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	235.619	30932474
DeepCCS	[M+Na]+	209.428	30932474
AllCCS	[M+H]+	215.5	32859911
AllCCS	[M+H-H2O]+	213.9	32859911
AllCCS	[M+NH4]+	216.9	32859911
AllCCS	[M+Na]+	217.3	32859911
AllCCS	[M-H]-	216.5	32859911
AllCCS	[M+Na-2H]-	218.1	32859911
AllCCS	[M+HCOO]-	219.9	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Absinthin	[H][C@@]12CC[C@](C)(O)[C@@]3([H])C(=C(C)[C@@]4([H])[C@]3([H])[C@H]3C=C(C)[C@@]44[C@@]5([H])OC(=O)[C@@H](C)[C@]5([H])CC[C@](C)(O)[C@]34[H])[C@]1([H])OC(=O)[C@H]2C	4544.7	Standard polar	33892256
Absinthin	[H][C@@]12CC[C@](C)(O)[C@@]3([H])C(=C(C)[C@@]4([H])[C@]3([H])[C@H]3C=C(C)[C@@]44[C@@]5([H])OC(=O)[C@@H](C)[C@]5([H])CC[C@](C)(O)[C@]34[H])[C@]1([H])OC(=O)[C@H]2C	3795.5	Standard non polar	33892256
Absinthin	[H][C@@]12CC[C@](C)(O)[C@@]3([H])C(=C(C)[C@@]4([H])[C@]3([H])[C@H]3C=C(C)[C@@]44[C@@]5([H])OC(=O)[C@@H](C)[C@]5([H])CC[C@](C)(O)[C@]34[H])[C@]1([H])OC(=O)[C@H]2C	4374.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Absinthin,1TMS,isomer #1	CC1=C[C@@H]2[C@@H]3[C@@H]4C(=C(C)[C@@H]3[C@]13[C@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@](C)(O)[C@H]23)[C@@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@]4(C)O[Si](C)(C)C	3720.3	Semi standard non polar	33892256
Absinthin,1TMS,isomer #2	CC1=C[C@@H]2[C@@H]3[C@@H]4C(=C(C)[C@@H]3[C@]13[C@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@](C)(O[Si](C)(C)C)[C@H]23)[C@@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@]4(C)O	3692.0	Semi standard non polar	33892256
Absinthin,2TMS,isomer #1	CC1=C[C@@H]2[C@@H]3[C@@H]4C(=C(C)[C@@H]3[C@]13[C@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@](C)(O[Si](C)(C)C)[C@H]23)[C@@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@]4(C)O[Si](C)(C)C	3731.8	Semi standard non polar	33892256
Absinthin,1TBDMS,isomer #1	CC1=C[C@@H]2[C@@H]3[C@@H]4C(=C(C)[C@@H]3[C@]13[C@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@](C)(O)[C@H]23)[C@@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@]4(C)O[Si](C)(C)C(C)(C)C	3923.9	Semi standard non polar	33892256
Absinthin,1TBDMS,isomer #2	CC1=C[C@@H]2[C@@H]3[C@@H]4C(=C(C)[C@@H]3[C@]13[C@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@](C)(O[Si](C)(C)C(C)(C)C)[C@H]23)[C@@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@]4(C)O	3903.1	Semi standard non polar	33892256
Absinthin,2TBDMS,isomer #1	CC1=C[C@@H]2[C@@H]3[C@@H]4C(=C(C)[C@@H]3[C@]13[C@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@](C)(O[Si](C)(C)C(C)(C)C)[C@H]23)[C@@H]1OC(=O)[C@@H](C)[C@@H]1CC[C@]4(C)O[Si](C)(C)C(C)(C)C	4157.5	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Absinthin GC-MS (Non-derivatized) - 70eV, Positive	splash10-0fi0-0006900000-e8c767aaef1b6397d298	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Absinthin GC-MS (2 TMS) - 70eV, Positive	splash10-004j-1002094000-21f7527ebee54735b593	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Absinthin GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 10V, Positive-QTOF	splash10-004j-0000900000-2909fbf81fb602ac3040	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 20V, Positive-QTOF	splash10-0a4i-0000900000-d21c9a562619077b5674	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 40V, Positive-QTOF	splash10-0pdi-0113900000-fbf7600ee6a63175538b	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 10V, Negative-QTOF	splash10-0f6t-0000900000-2f932edb370d1947b262	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 20V, Negative-QTOF	splash10-0fba-0000900000-e3a2c3e35015199b3276	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 40V, Negative-QTOF	splash10-0a4j-1005900000-f8c6020ac55c939ae28f	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 10V, Negative-QTOF	splash10-0002-0000900000-3ce13dc0a54418d1eaa7	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 20V, Negative-QTOF	splash10-0002-0000900000-675e4b5de9ee622e186e	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 40V, Negative-QTOF	splash10-004l-0000900000-7afc047653039e36577c	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 10V, Positive-QTOF	splash10-002b-0000900000-4dfba645c32b3bfbcfd8	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 20V, Positive-QTOF	splash10-004i-0000900000-61a54a50ded657146305	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Absinthin 40V, Positive-QTOF	splash10-00fr-0148900000-dabe332aee66d1b286d8	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Absinthin

METLIN ID

Not Available

PubChem Compound

131751859

PDB ID

Not Available

ChEBI ID

2366

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

rw1851351

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Zhang W, Luo S, Fang F, Chen Q, Hu H, Jia X, Zhai H: Total synthesis of absinthin. J Am Chem Soc. 2005 Jan 12;127(1):18-9. [PubMed:15631427 ]
Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Absinthin (HMDB0035742)

MOL for HMDB0035742 (Absinthin)

3D MOL for HMDB0035742 (Absinthin)

3D SDF for HMDB0035742 (Absinthin)

3D-SDF for HMDB0035742 (Absinthin)

PDB for HMDB0035742 (Absinthin)

3D PDB for HMDB0035742 (Absinthin)

SMILES for HMDB0035742 (Absinthin)

INCHI for HMDB0035742 (Absinthin)

Structure for HMDB0035742 (Absinthin)

3D Structure for HMDB0035742 (Absinthin)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra