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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2013-02-26 19:03:24 UTC
Update Date2022-03-07 03:17:36 UTC
HMDB IDHMDB0059773
Secondary Accession Numbers
  • HMDB59773
Metabolite Identification
Common NameS-3-oxodecanoyl cysteamine
DescriptionS-3-oxodecanoyl cysteamine belongs to the class of organic compounds known as fatty acyl thioesters. These are thioester derivatives of a fatty acid with the general formula RC(=O)SR', where R is the fatty acyl chain. S-3-oxodecanoyl cysteamine is a very strong basic compound (based on its pKa).
Structure
Data?1563865973
Synonyms
ValueSource
1-[(2-Aminoethyl)sulphanyl]decane-1,3-dioneGenerator
Chemical FormulaC12H23NO2S
Average Molecular Weight245.382
Monoisotopic Molecular Weight245.144949675
IUPAC Name1-[(2-aminoethyl)sulfanyl]decane-1,3-dione
Traditional Name1-[(2-aminoethyl)sulfanyl]decane-1,3-dione
CAS Registry NumberNot Available
SMILES
CCCCCCCC(=O)CC(=O)SCCN
InChI Identifier
InChI=1S/C12H23NO2S/c1-2-3-4-5-6-7-11(14)10-12(15)16-9-8-13/h2-10,13H2,1H3
InChI KeyLGPPHMDEKCAPLE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty acyl thioesters. These are thioester derivatives of a fatty acid with the general formula RC(=O)SR', where R is the fatty acyl chain.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct ParentFatty acyl thioesters
Alternative Parents
Substituents
  • Fatty acyl thioester
  • 1,3-dicarbonyl compound
  • Amino acid or derivatives
  • Ketone
  • Thiocarboxylic acid ester
  • Carbothioic s-ester
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Primary amine
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Amine
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.098 g/LALOGPS
logP2.57ALOGPS
logP2.77ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)9.91ChemAxon
pKa (Strongest Basic)8.59ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area60.16 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity69.39 m³·mol⁻¹ChemAxon
Polarizability28.69 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+161.15631661259
DarkChem[M-H]-158.53931661259
DeepCCS[M+H]+157.80530932474
DeepCCS[M-H]-154.86730932474
DeepCCS[M-2H]-191.40430932474
DeepCCS[M+Na]+167.06930932474
AllCCS[M+H]+159.132859911
AllCCS[M+H-H2O]+155.932859911
AllCCS[M+NH4]+162.132859911
AllCCS[M+Na]+162.932859911
AllCCS[M-H]-163.732859911
AllCCS[M+Na-2H]-164.932859911
AllCCS[M+HCOO]-166.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
S-3-oxodecanoyl cysteamineCCCCCCCC(=O)CC(=O)SCCN2938.0Standard polar33892256
S-3-oxodecanoyl cysteamineCCCCCCCC(=O)CC(=O)SCCN1978.6Standard non polar33892256
S-3-oxodecanoyl cysteamineCCCCCCCC(=O)CC(=O)SCCN1954.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
S-3-oxodecanoyl cysteamine,1TMS,isomer #1CCCCCCCC(=CC(=O)SCCN)O[Si](C)(C)C2131.6Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #1CCCCCCCC(=CC(=O)SCCN)O[Si](C)(C)C2057.3Standard non polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #1CCCCCCCC(=CC(=O)SCCN)O[Si](C)(C)C3036.7Standard polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #2CCCCCCC=C(CC(=O)SCCN)O[Si](C)(C)C2105.6Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #2CCCCCCC=C(CC(=O)SCCN)O[Si](C)(C)C2070.7Standard non polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #2CCCCCCC=C(CC(=O)SCCN)O[Si](C)(C)C3097.0Standard polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN[Si](C)(C)C2085.6Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN[Si](C)(C)C2090.9Standard non polar33892256
S-3-oxodecanoyl cysteamine,1TMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN[Si](C)(C)C2791.8Standard polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #1CCCCCCCC(=CC(=O)SCCN[Si](C)(C)C)O[Si](C)(C)C2290.6Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #1CCCCCCCC(=CC(=O)SCCN[Si](C)(C)C)O[Si](C)(C)C2269.1Standard non polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #1CCCCCCCC(=CC(=O)SCCN[Si](C)(C)C)O[Si](C)(C)C2545.4Standard polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #2CCCCCCC=C(CC(=O)SCCN[Si](C)(C)C)O[Si](C)(C)C2247.0Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #2CCCCCCC=C(CC(=O)SCCN[Si](C)(C)C)O[Si](C)(C)C2275.6Standard non polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #2CCCCCCC=C(CC(=O)SCCN[Si](C)(C)C)O[Si](C)(C)C2576.8Standard polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C2257.4Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C2293.6Standard non polar33892256
S-3-oxodecanoyl cysteamine,2TMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C2549.8Standard polar33892256
S-3-oxodecanoyl cysteamine,3TMS,isomer #1CCCCCCCC(=CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C2428.6Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,3TMS,isomer #1CCCCCCCC(=CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C2388.8Standard non polar33892256
S-3-oxodecanoyl cysteamine,3TMS,isomer #1CCCCCCCC(=CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C2426.3Standard polar33892256
S-3-oxodecanoyl cysteamine,3TMS,isomer #2CCCCCCC=C(CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C2395.0Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,3TMS,isomer #2CCCCCCC=C(CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C2430.0Standard non polar33892256
S-3-oxodecanoyl cysteamine,3TMS,isomer #2CCCCCCC=C(CC(=O)SCCN([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C2422.8Standard polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN)O[Si](C)(C)C(C)(C)C2364.6Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN)O[Si](C)(C)C(C)(C)C2262.3Standard non polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN)O[Si](C)(C)C(C)(C)C3040.5Standard polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN)O[Si](C)(C)C(C)(C)C2345.7Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN)O[Si](C)(C)C(C)(C)C2267.4Standard non polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN)O[Si](C)(C)C(C)(C)C3095.8Standard polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN[Si](C)(C)C(C)(C)C2311.0Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN[Si](C)(C)C(C)(C)C2322.6Standard non polar33892256
S-3-oxodecanoyl cysteamine,1TBDMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN[Si](C)(C)C(C)(C)C2790.1Standard polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2736.4Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2618.0Standard non polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2696.6Standard polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2692.4Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2650.9Standard non polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2717.1Standard polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2713.4Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2644.5Standard non polar33892256
S-3-oxodecanoyl cysteamine,2TBDMS,isomer #3CCCCCCCC(=O)CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2685.3Standard polar33892256
S-3-oxodecanoyl cysteamine,3TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3114.9Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,3TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2869.3Standard non polar33892256
S-3-oxodecanoyl cysteamine,3TBDMS,isomer #1CCCCCCCC(=CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2705.5Standard polar33892256
S-3-oxodecanoyl cysteamine,3TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3075.8Semi standard non polar33892256
S-3-oxodecanoyl cysteamine,3TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2915.4Standard non polar33892256
S-3-oxodecanoyl cysteamine,3TBDMS,isomer #2CCCCCCC=C(CC(=O)SCCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2702.5Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - S-3-oxodecanoyl cysteamine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-9600000000-0cf55660e56d8f15bda72017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - S-3-oxodecanoyl cysteamine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - S-3-oxodecanoyl cysteamine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 10V, Positive-QTOFsplash10-004m-9060000000-98045f20bacd7271e5a02017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 20V, Positive-QTOFsplash10-004m-9220000000-6a4fb12b2aaed73b74a22017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 40V, Positive-QTOFsplash10-0006-9000000000-01f5cb84f691b8fc77032017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 10V, Negative-QTOFsplash10-00mo-7790000000-0cdbfc4085c786b8fbec2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 20V, Negative-QTOFsplash10-0fvl-8910000000-fd2afe91e0c0f676a8ae2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 40V, Negative-QTOFsplash10-002f-9200000000-e0fa4ee71e19078728512017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 10V, Positive-QTOFsplash10-002b-1390000000-143119e5b3d727c7a9e92021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 20V, Positive-QTOFsplash10-004i-9820000000-87a5ea9ff25738cd74152021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 40V, Positive-QTOFsplash10-002f-9000000000-22f7eac818458d7508f52021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 10V, Negative-QTOFsplash10-0006-0090000000-e24d5f23e4d5c4a46d152021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 20V, Negative-QTOFsplash10-0fk9-9230000000-828b046619adea99a0dc2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-3-oxodecanoyl cysteamine 40V, Negative-QTOFsplash10-00b9-9100000000-0977daed3f8b500ddd7f2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen Locations
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Male
Diabetes mellitus type 1
details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Male
Diabetes mellitus type 1
details
Associated Disorders and Diseases
Disease References
Diabetes mellitus type 1
  1. van der Kloet FM, Tempels FW, Ismail N, van der Heijden R, Kasper PT, Rojas-Cherto M, van Doorn R, Spijksma G, Koek M, van der Greef J, Makinen VP, Forsblom C, Holthofer H, Groop PH, Reijmers TH, Hankemeier T: Discovery of early-stage biomarkers for diabetic kidney disease using ms-based metabolomics (FinnDiane study). Metabolomics. 2012 Feb;8(1):109-119. Epub 2011 Feb 24. [PubMed:22279428 ]
Associated OMIM IDs
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound124202115
PDB IDNot Available
ChEBI ID89859
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.