Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2013-05-09 21:15:58 UTC
Update Date2023-02-21 17:29:49 UTC
HMDB IDHMDB0060285
Secondary Accession Numbers
  • HMDB60285
Metabolite Identification
Common Name4-Oxo-2-nonenal
Description4-Oxo-2-nonenal, also known as ONE or 4-oxonon-2-enal, belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms. Thus, 4-oxo-2-nonenal is considered to be a fatty aldehyde lipid molecule. 4-Oxo-2-nonenal is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
Data?1677000589
Synonyms
ValueSource
ONEChEBI
4-Oxonon-2-enalHMDB
4-oxo-2-NonenalChEBI
Chemical FormulaC9H14O2
Average Molecular Weight154.2063
Monoisotopic Molecular Weight154.099379692
IUPAC Name(2E)-4-oxonon-2-enal
Traditional Name4-oxo-2-nonenal
CAS Registry NumberNot Available
SMILES
CCCCCC(=O)\C=C\C=O
InChI Identifier
InChI=1S/C9H14O2/c1-2-3-4-6-9(11)7-5-8-10/h5,7-8H,2-4,6H2,1H3/b7-5+
InChI KeySEPPVOUBHWNCAW-FNORWQNLSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentMedium-chain aldehydes
Alternative Parents
Substituents
  • Medium-chain aldehyde
  • Alpha,beta-unsaturated ketone
  • Enone
  • Enal
  • Alpha,beta-unsaturated aldehyde
  • Acryloyl-group
  • Ketone
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.83 g/LALOGPS
logP2.57ALOGPS
logP2.16ChemAxon
logS-2.3ALOGPS
pKa (Strongest Basic)-6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area34.14 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity45.66 m³·mol⁻¹ChemAxon
Polarizability17.8 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+140.08330932474
DeepCCS[M-H]-136.90330932474
DeepCCS[M-2H]-174.46330932474
DeepCCS[M+Na]+149.52730932474
AllCCS[M+H]+137.132859911
AllCCS[M+H-H2O]+133.032859911
AllCCS[M+NH4]+140.832859911
AllCCS[M+Na]+141.932859911
AllCCS[M-H]-138.132859911
AllCCS[M+Na-2H]-140.032859911
AllCCS[M+HCOO]-142.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
4-Oxo-2-nonenalCCCCCC(=O)\C=C\C=O1909.1Standard polar33892256
4-Oxo-2-nonenalCCCCCC(=O)\C=C\C=O1265.8Standard non polar33892256
4-Oxo-2-nonenalCCCCCC(=O)\C=C\C=O1284.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
4-Oxo-2-nonenal,1TMS,isomer #1CCCCC=C(/C=C/C=O)O[Si](C)(C)C1540.4Semi standard non polar33892256
4-Oxo-2-nonenal,1TMS,isomer #1CCCCC=C(/C=C/C=O)O[Si](C)(C)C1475.6Standard non polar33892256
4-Oxo-2-nonenal,1TMS,isomer #1CCCCC=C(/C=C/C=O)O[Si](C)(C)C1622.6Standard polar33892256
4-Oxo-2-nonenal,1TBDMS,isomer #1CCCCC=C(/C=C/C=O)O[Si](C)(C)C(C)(C)C1788.9Semi standard non polar33892256
4-Oxo-2-nonenal,1TBDMS,isomer #1CCCCC=C(/C=C/C=O)O[Si](C)(C)C(C)(C)C1696.6Standard non polar33892256
4-Oxo-2-nonenal,1TBDMS,isomer #1CCCCC=C(/C=C/C=O)O[Si](C)(C)C(C)(C)C1774.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 4-Oxo-2-nonenal GC-MS (Non-derivatized) - 70eV, Positivesplash10-001i-9100000000-efe591273d1495c166412017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4-Oxo-2-nonenal GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 10V, Positive-QTOFsplash10-0a4i-0900000000-8ec31c41cff7a0abc1ec2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 20V, Positive-QTOFsplash10-0a4i-9300000000-14a57e9edd8caf6e55fd2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 40V, Positive-QTOFsplash10-0a4l-9000000000-04249f87579540c3dfa62017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 10V, Negative-QTOFsplash10-0udi-1900000000-97fbe8cd492af4744c912017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 20V, Negative-QTOFsplash10-0ufs-7900000000-4622bf1943efad74191b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 40V, Negative-QTOFsplash10-00kg-9000000000-593e3b0de4db89a8085c2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 10V, Positive-QTOFsplash10-0a4i-9300000000-0f00b478e15f9b349e552021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 20V, Positive-QTOFsplash10-01bc-9000000000-25aae135f639a67b483d2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 40V, Positive-QTOFsplash10-014l-9000000000-3a083438fee7b2bc6ae42021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 10V, Negative-QTOFsplash10-0udi-0900000000-f560fa00e40e3a40a4082021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 20V, Negative-QTOFsplash10-0006-9200000000-15a328c4f2314dc06d8a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Oxo-2-nonenal 40V, Negative-QTOFsplash10-05mn-9000000000-03973c4d1196913dbb382021-10-12Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
UrineDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia Link4-Oxo-2-nonenal
METLIN IDNot Available
PubChem Compound6445537
PDB IDNot Available
ChEBI ID58972
Food Biomarker OntologyNot Available
VMH IDCE2577
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bolling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novere N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BO: A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3. [PubMed:23455439 ]