Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2014-06-23 13:37:13 UTC
Update Date2019-07-23 07:17:04 UTC
HMDB IDHMDB0061725
Secondary Accession Numbers
  • HMDB61725
Metabolite Identification
Common NameRilpivirine
DescriptionRilpivirine, also known as TMC 278 or 278, TMC, belongs to the class of organic compounds known as benzonitriles. These are organic compounds containing a benzene bearing a nitrile substituent. Rilpivirine is a very strong basic compound (based on its pKa). Ripivirine treatment produces a significant and effective reduction in the viral load based on the study of HIV-1 RNA copies per ml or immunologic changes by the determination of counts of CD4+ and CD8+ cells. In humans, rilpivirine is involved in rilpivirine action pathway. Mainly hepatically metabolized by CYP3A. Rilpivirine was developed by Tilbotec, Inc. and FDA approved on May 20, 2011. It does not present activity against human DNA polymerases α, β and γ. It did not show any effect on mating or fertility in animal studies. The combinantion therapy (ripivirine and dolutegravir) presented the same viral supression found in previous three-drug therapies without integrase strand transfer inhibitor mutations or rilpivirine resistance. Its binding results in the blockage of RNA and DNA- dependent DNA polymerase activities, like HIV-1 replication. The internal conformational flexibility of rilpivirine and the plasticity of it interacting binding site gives it a very high potency and an unlikely generation of resistance compared to other NNRTI's.
Structure
Data?1563866224
Synonyms
ValueSource
4-{[4-({4-[(e)-2-cyanovinyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrileChEBI
TMC 278ChEBI
TMC278ChEBI
278, TMCHMDB
HCL, RilpivirineHMDB
Rilpivirine HCLHMDB
Rilpivirine hydrochlorideHMDB
Hydrochloride, rilpivirineHMDB
TMC-278HMDB
Chemical FormulaC22H18N6
Average Molecular Weight366.4185
Monoisotopic Molecular Weight366.159294606
IUPAC Name4-{[4-({4-[(1E)-2-cyanoeth-1-en-1-yl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile
Traditional Namerilpivirine
CAS Registry NumberNot Available
SMILES
CC1=CC(\C=C\C#N)=CC(C)=C1NC1=NC(NC2=CC=C(C=C2)C#N)=NC=C1
InChI Identifier
InChI=1S/C22H18N6/c1-15-12-18(4-3-10-23)13-16(2)21(15)27-20-9-11-25-22(28-20)26-19-7-5-17(14-24)6-8-19/h3-9,11-13H,1-2H3,(H2,25,26,27,28)/b4-3+
InChI KeyYIBOMRUWOWDFLG-ONEGZZNKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzonitriles. These are organic compounds containing a benzene bearing a nitrile substituent.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzonitriles
Direct ParentBenzonitriles
Alternative Parents
Substituents
  • Benzonitrile
  • M-xylene
  • Xylene
  • Styrene
  • Aniline or substituted anilines
  • Aminopyrimidine
  • Hydropyrimidine
  • Pyrimidine
  • Imidolactam
  • Heteroaromatic compound
  • Azacycle
  • Secondary amine
  • Nitrile
  • Carbonitrile
  • Organoheterocyclic compound
  • Amine
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic nitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
DispositionNot Available
Process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.012 g/LALOGPS
logP3.8ALOGPS
logP5.47ChemAxon
logS-4.5ALOGPS
pKa (Strongest Acidic)12.93ChemAxon
pKa (Strongest Basic)5.16ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area97.42 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity111.74 m³·mol⁻¹ChemAxon
Polarizability40.65 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+187.39730932474
DeepCCS[M-H]-185.03930932474
DeepCCS[M-2H]-218.9230932474
DeepCCS[M+Na]+194.05430932474
AllCCS[M+H]+191.732859911
AllCCS[M+H-H2O]+188.832859911
AllCCS[M+NH4]+194.332859911
AllCCS[M+Na]+195.032859911
AllCCS[M-H]-190.632859911
AllCCS[M+Na-2H]-190.032859911
AllCCS[M+HCOO]-189.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
RilpivirineCC1=CC(\C=C\C#N)=CC(C)=C1NC1=NC(NC2=CC=C(C=C2)C#N)=NC=C15218.8Standard polar33892256
RilpivirineCC1=CC(\C=C\C#N)=CC(C)=C1NC1=NC(NC2=CC=C(C=C2)C#N)=NC=C13547.6Standard non polar33892256
RilpivirineCC1=CC(\C=C\C#N)=CC(C)=C1NC1=NC(NC2=CC=C(C=C2)C#N)=NC=C14030.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Rilpivirine,1TMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(NC2=CC=C(C#N)C=C2)=N1)[Si](C)(C)C3527.0Semi standard non polar33892256
Rilpivirine,1TMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(NC2=CC=C(C#N)C=C2)=N1)[Si](C)(C)C3539.0Standard non polar33892256
Rilpivirine,1TMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(NC2=CC=C(C#N)C=C2)=N1)[Si](C)(C)C5785.1Standard polar33892256
Rilpivirine,1TMS,isomer #2CC1=CC(/C=C/C#N)=CC(C)=C1NC1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C)=N13536.0Semi standard non polar33892256
Rilpivirine,1TMS,isomer #2CC1=CC(/C=C/C#N)=CC(C)=C1NC1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C)=N13461.2Standard non polar33892256
Rilpivirine,1TMS,isomer #2CC1=CC(/C=C/C#N)=CC(C)=C1NC1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C)=N15646.3Standard polar33892256
Rilpivirine,2TMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C)=N1)[Si](C)(C)C3377.6Semi standard non polar33892256
Rilpivirine,2TMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C)=N1)[Si](C)(C)C3378.3Standard non polar33892256
Rilpivirine,2TMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C)=N1)[Si](C)(C)C5190.8Standard polar33892256
Rilpivirine,1TBDMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(NC2=CC=C(C#N)C=C2)=N1)[Si](C)(C)C(C)(C)C3730.1Semi standard non polar33892256
Rilpivirine,1TBDMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(NC2=CC=C(C#N)C=C2)=N1)[Si](C)(C)C(C)(C)C3748.7Standard non polar33892256
Rilpivirine,1TBDMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(NC2=CC=C(C#N)C=C2)=N1)[Si](C)(C)C(C)(C)C5711.8Standard polar33892256
Rilpivirine,1TBDMS,isomer #2CC1=CC(/C=C/C#N)=CC(C)=C1NC1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C(C)(C)C)=N13718.1Semi standard non polar33892256
Rilpivirine,1TBDMS,isomer #2CC1=CC(/C=C/C#N)=CC(C)=C1NC1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C(C)(C)C)=N13632.2Standard non polar33892256
Rilpivirine,1TBDMS,isomer #2CC1=CC(/C=C/C#N)=CC(C)=C1NC1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C(C)(C)C)=N15580.4Standard polar33892256
Rilpivirine,2TBDMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C(C)(C)C)=N1)[Si](C)(C)C(C)(C)C3710.7Semi standard non polar33892256
Rilpivirine,2TBDMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C(C)(C)C)=N1)[Si](C)(C)C(C)(C)C3775.6Standard non polar33892256
Rilpivirine,2TBDMS,isomer #1CC1=CC(/C=C/C#N)=CC(C)=C1N(C1=CC=NC(N(C2=CC=C(C#N)C=C2)[Si](C)(C)C(C)(C)C)=N1)[Si](C)(C)C(C)(C)C5120.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Rilpivirine GC-MS (Non-derivatized) - 70eV, Positivesplash10-014i-0649000000-96980e5526a79d1240342017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Rilpivirine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 10V, Positive-QTOFsplash10-014i-0109000000-f0ca783d371380bc70e52017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 20V, Positive-QTOFsplash10-0udi-1219000000-e52f83b92e47c660600d2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 40V, Positive-QTOFsplash10-0zmj-4920000000-97a3c101caf2d43175bb2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 10V, Negative-QTOFsplash10-014i-0109000000-b3b95eac39ccf546b1472017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 20V, Negative-QTOFsplash10-014i-0629000000-e93c0f34e547e8a4da812017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 40V, Negative-QTOFsplash10-00kf-2910000000-04ece45ca32dd4273a602017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 10V, Positive-QTOFsplash10-014i-0009000000-efe986bd6a1d1d4ca2a52021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 20V, Positive-QTOFsplash10-0fr6-0009000000-b5cb0a38cec89212efdc2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 40V, Positive-QTOFsplash10-032c-0419000000-bf2ec0c5ebbff53474bf2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 10V, Negative-QTOFsplash10-014i-0009000000-c838d008fa2a990682022021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 20V, Negative-QTOFsplash10-014i-0209000000-a8521253d42dfbf297672021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Rilpivirine 40V, Negative-QTOFsplash10-014i-1910000000-8cb4bc72ef66b926a7d62021-09-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB08864
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkRilpivirine
METLIN IDNot Available
PubChem Compound6451164
PDB IDNot Available
ChEBI ID68606
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
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  5. Hughes CA, Robinson L, Tseng A, MacArthur RD: New antiretroviral drugs: a review of the efficacy, safety, pharmacokinetics, and resistance profile of tipranavir, darunavir, etravirine, rilpivirine, maraviroc, and raltegravir. Expert Opin Pharmacother. 2009 Oct;10(15):2445-66. doi: 10.1517/14656560903176446. [PubMed:19678794 ]
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  27. Anta L, Llibre JM, Poveda E, Blanco JL, Alvarez M, Perez-Elias MJ, Aguilera A, Caballero E, Soriano V, de Mendoza C: Rilpivirine resistance mutations in HIV patients failing non-nucleoside reverse transcriptase inhibitor-based therapies. AIDS. 2013 Jan 2;27(1):81-5. doi: 10.1097/QAD.0b013e3283584500. [PubMed:22842995 ]
  28. Schafer JJ, Short WR: Rilpivirine, a novel non-nucleoside reverse transcriptase inhibitor for the management of HIV-1 infection: a systematic review. Antivir Ther. 2012;17(8):1495-502. doi: 10.3851/IMP2254. Epub 2012 Aug 10. [PubMed:22878339 ]
  29. Lyseng-Williamson KA, Scott LJ: Emtricitabine/rilpivirine/tenofovir disoproxil fumarate single-tablet regimen: a guide to its use in HIV-1 infection. Clin Drug Investig. 2012 Oct 1;32(10):715-22. doi: 10.2165/11209870-000000000-00000. [PubMed:22921088 ]
  30. Vingerhoets J, Rimsky L, Van Eygen V, Nijs S, Vanveggel S, Boven K, Picchio G: Pre-existing mutations in the rilpivirine Phase III trials ECHO and THRIVE: prevalence and impact on virological response. Antivir Ther. 2013;18(2):253-6. doi: 10.3851/IMP2358. Epub 2012 Sep 6. [PubMed:22951490 ]