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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:57:23 UTC
Update Date2021-09-26 22:52:50 UTC
HMDB IDHMDB0244825
Secondary Accession NumbersNone
Metabolite Identification
Common Name1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide
Description({[3-(dimethylamino)propyl]imino}methylidene)(ethyl)amine belongs to the class of organic compounds known as trialkylamines. These are organic compounds containing a trialkylamine group, characterized by exactly three alkyl groups bonded to the amino nitrogen. Based on a literature review very few articles have been published on ({[3-(dimethylamino)propyl]imino}methylidene)(ethyl)amine. This compound has been identified in human blood as reported by (PMID: 31557052 ). 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
3-(3-Dimethylaminopropyl)-1-ethylcarbodiimideMeSH
Carbodiimide, ethyldimethylaminopropylMeSH
EDAP carbodiimideMeSH
EDAP-carbodiimideMeSH
Ethyldimethylaminopropyl carbodiimideMeSH
Chemical FormulaC8H17N3
Average Molecular Weight155.245
Monoisotopic Molecular Weight155.142247559
IUPAC Name({[3-(dimethylamino)propyl]imino}methylidene)(ethyl)amine
Traditional Name({[3-(dimethylamino)propyl]imino}methylidene)(ethyl)amine
CAS Registry NumberNot Available
SMILES
CCN=C=NCCCN(C)C
InChI Identifier
InChI=1S/C8H17N3/c1-4-9-8-10-6-5-7-11(2)3/h4-7H2,1-3H3
InChI KeyLMDZBCPBFSXMTL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as trialkylamines. These are organic compounds containing a trialkylamine group, characterized by exactly three alkyl groups bonded to the amino nitrogen.
KingdomOrganic compounds
Super ClassOrganic nitrogen compounds
ClassOrganonitrogen compounds
Sub ClassAmines
Direct ParentTrialkylamines
Alternative Parents
Substituents
  • Tertiary aliphatic amine
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carbodiimide
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.28ALOGPS
logP0.63ChemAxon
logS-2ALOGPS
pKa (Strongest Basic)9.28ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area27.96 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity47.93 m³·mol⁻¹ChemAxon
Polarizability19.47 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+138.96130932474
DeepCCS[M-H]-135.75830932474
DeepCCS[M-2H]-172.56530932474
DeepCCS[M+Na]+147.9430932474
AllCCS[M+H]+137.832859911
AllCCS[M+H-H2O]+134.032859911
AllCCS[M+NH4]+141.432859911
AllCCS[M+Na]+142.432859911
AllCCS[M-H]-139.432859911
AllCCS[M+Na-2H]-141.632859911
AllCCS[M+HCOO]-144.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1-Ethyl-3-(3-dimethylaminopropyl)carbodiimideCCN=C=NCCCN(C)C1922.9Standard polar33892256
1-Ethyl-3-(3-dimethylaminopropyl)carbodiimideCCN=C=NCCCN(C)C1146.2Standard non polar33892256
1-Ethyl-3-(3-dimethylaminopropyl)carbodiimideCCN=C=NCCCN(C)C1171.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4l-9000000000-c89a4be7a152538705262021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide 10V, Positive-QTOFsplash10-053i-9500000000-fc716020d4bd78b9fb9a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide 20V, Positive-QTOFsplash10-000i-9100000000-424b2cfa5f39bb4914cd2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide 40V, Positive-QTOFsplash10-0a5l-9000000000-07ff603fceb561f956852021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide 10V, Negative-QTOFsplash10-0udi-1900000000-8d75b76eea92f4149a6e2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide 20V, Negative-QTOFsplash10-0udm-9800000000-d680775b7f592d29caa92021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide 40V, Negative-QTOFsplash10-00kf-9000000000-04ddf71f939fa48c0b9e2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID15119
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]