Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 12:04:53 UTC
Update Date2021-09-26 23:06:46 UTC
HMDB IDHMDB0253508
Secondary Accession NumbersNone
Metabolite Identification
Common NameIobitridol
DescriptionIobitridol belongs to the class of organic compounds known as 4-halobenzoic acids and derivatives. These are benzoic acids or derivatives carrying a halogen atom at the 4-position of the benzene ring. Iobitridol is an extremely weak basic (essentially neutral) compound (based on its pKa). A benzenedicarboxamide compound having N-substituted carbamoyl groups at the 1- and 3-positions, iodo substituents at the 2-, 4- and 6-positions and a 3-hydroxy-2-(hydroxymethyl)propanimido at position 5. This compound has been identified in human blood as reported by (PMID: 31557052 ). Iobitridol is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Iobitridol is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
N,N'-bis(2,3-dihydroxypropyl)-5-(2-(hydroxymethyl)hydracrylamido)-2,4,6-triiodo-N,n'-dimethylisophthalamideChEBI
5-(3-Hydroxy-2-hydroxymethylpropionamido)-N,n'-dimethyl-N,n'-bis(2,3-dihydroxypropyl)-2,4,6-triiodoisophthalamideMeSH
XenetixMeSH
N-{3,5-bis[(2,3-dihydroxypropyl)(methyl)carbamoyl]-2,4,6-triiodophenyl}-3-hydroxy-2-(hydroxymethyl)propanimidateGenerator
Chemical FormulaC20H28I3N3O9
Average Molecular Weight835.169
Monoisotopic Molecular Weight834.89596
IUPAC NameN-{3,5-bis[(2,3-dihydroxypropyl)(methyl)carbamoyl]-2,4,6-triiodophenyl}-3-hydroxy-2-(hydroxymethyl)propanimidic acid
Traditional Nameiobitridol
CAS Registry NumberNot Available
SMILES
CN(CC(O)CO)C(=O)C1=C(I)C(C(=O)N(C)CC(O)CO)=C(I)C(N=C(O)C(CO)CO)=C1I
InChI Identifier
InChI=1S/C20H28I3N3O9/c1-25(3-10(31)7-29)19(34)12-14(21)13(20(35)26(2)4-11(32)8-30)16(23)17(15(12)22)24-18(33)9(5-27)6-28/h9-11,27-32H,3-8H2,1-2H3,(H,24,33)
InChI KeyYLPBXIKWXNRACS-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 4-halobenzoic acids and derivatives. These are benzoic acids or derivatives carrying a halogen atom at the 4-position of the benzene ring.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzoic acids and derivatives
Direct Parent4-halobenzoic acids and derivatives
Alternative Parents
Substituents
  • 4-halobenzoic acid or derivatives
  • 2-halobenzoic acid or derivatives
  • Benzamide
  • Benzoyl
  • Halobenzene
  • Iodobenzene
  • Aryl halide
  • Aryl iodide
  • Vinylogous halide
  • Tertiary carboxylic acid amide
  • Carboxamide group
  • Secondary alcohol
  • Carboximidic acid
  • Carboximidic acid derivative
  • Carboxylic acid derivative
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Alcohol
  • Organic oxide
  • Organohalogen compound
  • Organoiodide
  • Organonitrogen compound
  • Organooxygen compound
  • Primary alcohol
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-2.4ALOGPS
logP-0.64ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)3.41ChemAxon
pKa (Strongest Basic)-0.77ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area194.59 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity156.77 m³·mol⁻¹ChemAxon
Polarizability61.72 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+227.87230932474
DeepCCS[M-H]-225.51430932474
DeepCCS[M-2H]-258.39830932474
DeepCCS[M+Na]+233.96530932474
AllCCS[M+H]+223.432859911
AllCCS[M+H-H2O]+223.432859911
AllCCS[M+NH4]+223.432859911
AllCCS[M+Na]+223.432859911
AllCCS[M-H]-259.332859911
AllCCS[M+Na-2H]-262.832859911
AllCCS[M+HCOO]-266.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
IobitridolCN(CC(O)CO)C(=O)C1=C(I)C(C(=O)N(C)CC(O)CO)=C(I)C(N=C(O)C(CO)CO)=C1I4777.0Standard polar33892256
IobitridolCN(CC(O)CO)C(=O)C1=C(I)C(C(=O)N(C)CC(O)CO)=C(I)C(N=C(O)C(CO)CO)=C1I3189.3Standard non polar33892256
IobitridolCN(CC(O)CO)C(=O)C1=C(I)C(C(=O)N(C)CC(O)CO)=C(I)C(N=C(O)C(CO)CO)=C1I5292.2Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-00lr-0000001930-8a8442d7b6ab18ff13e72017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-000i-0010004190-b1bf60e03ae2a09547842017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0udi-0001907000-fe9964ad86b4f06e4b662017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0udl-0025910000-f99bef04d2b15a84b61c2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-02mu-0695000000-62aff53728c072b75c0d2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0mbi-0941000000-f370ded530a0fb0215962017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0w29-0920000000-2864a92f92a95eae63362017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-000i-0010003190-4318fba3a915b5afb5e12017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0udi-0000906000-d07b5a9bc2d4a12aff882017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0udi-0035910000-0e3b349bde4e05f982872017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0079-0797100000-2bd8fcb743a30f3179172017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-022i-0940000000-3e41429ba1f6d9cd99b92017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-0w90-0920000000-ee3517d718393493f3442017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol LC-ESI-ITFT , positive-QTOFsplash10-00lr-0000001930-6ebd6829b69d74f40d9c2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol 15V, Positive-QTOFsplash10-000i-0010003190-4318fba3a915b5afb5e12021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol 30V, Positive-QTOFsplash10-0udi-0001907000-fe9964ad86b4f06e4b662021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol 35V, Positive-QTOFsplash10-00lr-0000001930-64e1bd6723a538b642de2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol 15V, Positive-QTOFsplash10-000i-0010004190-b1bf60e03ae2a09547842021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Iobitridol 35V, Positive-QTOFsplash10-00lr-0000001930-73110064bd34529e94892021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Iobitridol 10V, Positive-QTOFsplash10-00kr-1100000590-c6941171010c3d3350b62017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Iobitridol 20V, Positive-QTOFsplash10-0ku2-5200000920-8e60207d5b59329f97682017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Iobitridol 40V, Positive-QTOFsplash10-0a4i-8200008900-965e5ba098d3267b189a2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Iobitridol 10V, Negative-QTOFsplash10-00lr-0200000190-1b4eb345c32245ecc3862017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Iobitridol 20V, Negative-QTOFsplash10-0kur-4900000760-2a4e211cc14e221fde272017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Iobitridol 40V, Negative-QTOFsplash10-066u-9700001200-9d3bfd0de766d50fc0002017-07-26Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB12407
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkIobitridol
METLIN IDNot Available
PubChem Compound65985
PDB IDNot Available
ChEBI ID31701
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]