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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 23:02:10 UTC
Update Date2021-09-26 23:17:53 UTC
HMDB IDHMDB0260003
Secondary Accession NumbersNone
Metabolite Identification
Common NameZibotentan
DescriptionZibotentan belongs to the class of organic compounds known as phenylpyridines. These are polycyclic aromatic compounds containing a benzene ring linked to a pyridine ring through a CC or CN bond. Based on a literature review very few articles have been published on Zibotentan. This compound has been identified in human blood as reported by (PMID: 31557052 ). Zibotentan is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Zibotentan is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
ZD-4054ZIBOTENTANChEMBL
ZD4054ChEMBL
trans,trans-2(4-Methoxyphenyl)-4-(1-3-benzodiazol-5-yl)-1-(dibutylaminocarbonylmethyl)pyrrolidine-3-carboxylic acidMeSH
N-(3-Methoxy-5-methyl-1,2-dihydropyrazin-2-ylidene)-2-[4-(1,3,4-oxadiazol-2-yl)phenyl]pyridine-3-sulphonamideGenerator
Chemical FormulaC19H16N6O4S
Average Molecular Weight424.44
Monoisotopic Molecular Weight424.095374193
IUPAC NameN-(3-methoxy-5-methylpyrazin-2-yl)-2-[4-(1,3,4-oxadiazol-2-yl)phenyl]pyridine-3-sulfonamide
Traditional Namezibotentan
CAS Registry NumberNot Available
SMILES
COC1=NC(C)=CN=C1NS(=O)(=O)C1=CC=CN=C1C1=CC=C(C=C1)C1=NN=CO1
InChI Identifier
InChI=1S/C19H16N6O4S/c1-12-10-21-17(19(23-12)28-2)25-30(26,27)15-4-3-9-20-16(15)13-5-7-14(8-6-13)18-24-22-11-29-18/h3-11H,1-2H3,(H,21,25)
InChI KeyFJHHZXWJVIEFGJ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenylpyridines. These are polycyclic aromatic compounds containing a benzene ring linked to a pyridine ring through a CC or CN bond.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridines and derivatives
Sub ClassPhenylpyridines
Direct ParentPhenylpyridines
Alternative Parents
Substituents
  • 2-phenylpyridine
  • Pyridine-3-sulfonamide
  • Methoxypyrazine
  • Alkyl aryl ether
  • Pyrazine
  • Organosulfonic acid amide
  • Benzenoid
  • Imidolactam
  • Monocyclic benzene moiety
  • Organic sulfonic acid or derivatives
  • Aminosulfonyl compound
  • Sulfonyl
  • Organosulfonic acid or derivatives
  • Azole
  • Oxadiazole
  • Heteroaromatic compound
  • 1,3,4-oxadiazole
  • Ether
  • Oxacycle
  • Azacycle
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Organosulfur compound
  • Organic oxygen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.33ALOGPS
logP1.01ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)5.46ChemAxon
pKa (Strongest Basic)0.92ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area132.99 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity118.89 m³·mol⁻¹ChemAxon
Polarizability42.05 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+199.50432859911
AllCCS[M+H-H2O]+196.7632859911
AllCCS[M+Na]+202.75932859911
AllCCS[M+NH4]+202.03432859911
AllCCS[M-H]-195.71932859911
AllCCS[M+Na-2H]-195.76932859911
AllCCS[M+HCOO]-195.97632859911
DeepCCS[M+H]+189.64830932474
DeepCCS[M-H]-187.25230932474
DeepCCS[M-2H]-220.73430932474
DeepCCS[M+Na]+195.89730932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
ZibotentanCOC1=NC(C)=CN=C1NS(=O)(=O)C1=CC=CN=C1C1=CC=C(C=C1)C1=NN=CO15065.4Standard polar33892256
ZibotentanCOC1=NC(C)=CN=C1NS(=O)(=O)C1=CC=CN=C1C1=CC=C(C=C1)C1=NN=CO13768.0Standard non polar33892256
ZibotentanCOC1=NC(C)=CN=C1NS(=O)(=O)C1=CC=CN=C1C1=CC=C(C=C1)C1=NN=CO13741.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Zibotentan,1TMS,isomer #1COC1=NC(C)=CN=C1N([Si](C)(C)C)S(=O)(=O)C1=CC=CN=C1C1=CC=C(C2=NN=CO2)C=C13652.5Semi standard non polar33892256
Zibotentan,1TMS,isomer #1COC1=NC(C)=CN=C1N([Si](C)(C)C)S(=O)(=O)C1=CC=CN=C1C1=CC=C(C2=NN=CO2)C=C13420.5Standard non polar33892256
Zibotentan,1TMS,isomer #1COC1=NC(C)=CN=C1N([Si](C)(C)C)S(=O)(=O)C1=CC=CN=C1C1=CC=C(C2=NN=CO2)C=C15708.8Standard polar33892256
Zibotentan,1TBDMS,isomer #1COC1=NC(C)=CN=C1N([Si](C)(C)C(C)(C)C)S(=O)(=O)C1=CC=CN=C1C1=CC=C(C2=NN=CO2)C=C13852.8Semi standard non polar33892256
Zibotentan,1TBDMS,isomer #1COC1=NC(C)=CN=C1N([Si](C)(C)C(C)(C)C)S(=O)(=O)C1=CC=CN=C1C1=CC=C(C2=NN=CO2)C=C13628.1Standard non polar33892256
Zibotentan,1TBDMS,isomer #1COC1=NC(C)=CN=C1N([Si](C)(C)C(C)(C)C)S(=O)(=O)C1=CC=CN=C1C1=CC=C(C2=NN=CO2)C=C15597.1Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Zibotentan GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-4639300000-7e2e3f70744d01d059832021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Zibotentan GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Zibotentan 10V, Positive-QTOFsplash10-004i-1003900000-e4608c74f29fd0d4ac0c2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Zibotentan 20V, Positive-QTOFsplash10-0032-0019200000-96532b362af7e475af942017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Zibotentan 40V, Positive-QTOFsplash10-0udi-9012000000-4c825aa07442f4f67af02017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Zibotentan 10V, Negative-QTOFsplash10-0006-9002200000-d8e810724386ca4542642017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Zibotentan 20V, Negative-QTOFsplash10-0abc-4049100000-58a5aa0904dab207c3ac2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Zibotentan 40V, Negative-QTOFsplash10-000i-3169000000-87190dc3ba549bbf28612017-07-26Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB06629
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8085875
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkZibotentan
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]