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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 20:45:46 UTC
Update Date2021-09-24 20:45:46 UTC
HMDB IDHMDB0304882
Secondary Accession NumbersNone
Metabolite Identification
Common NameUbrogepant
DescriptionUbrogepant, also known as ubrelvy, belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. Based on a literature review very few articles have been published on Ubrogepant.
Structure
Thumb
Synonyms
ValueSource
1',2',5,7-Tetrahydro-N-((3S,5S,6R)-6-methyl-2-oxo-5-phenyl-1-(2,2,2-trifluoroethyl)-3-piperidinyl)-2'-oxo-, (6S)- spiro(6H-cyclopenta(b)pyridine-6,3'-(3H)pyrrolo(2,3-b)pyridine)-3-carboxamideMeSH
UbrelvyMeSH
Chemical FormulaC29H26F3N5O3
Average Molecular Weight549.554
Monoisotopic Molecular Weight549.198774206
IUPAC Name(6S)-N-[(3S,5S,6R)-6-methyl-2-oxo-5-phenyl-1-(2,2,2-trifluoroethyl)piperidin-3-yl]-2'-oxo-1',2',5,7-tetrahydrospiro[cyclopenta[b]pyridine-6,3'-pyrrolo[2,3-b]pyridine]-3-carboxamide
Traditional Name(6S)-N-[(3S,5S,6R)-6-methyl-2-oxo-5-phenyl-1-(2,2,2-trifluoroethyl)piperidin-3-yl]-2'-oxo-5,7-dihydro-1'H-spiro[cyclopenta[b]pyridine-6,3'-pyrrolo[2,3-b]pyridine]-3-carboxamide
CAS Registry NumberNot Available
SMILES
C[C@@H]1[C@@H](C[C@H](NC(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)NC2=NC=CC=C42)C(=O)N1CC(F)(F)F)C1=CC=CC=C1
InChI Identifier
InChI=1S/C29H26F3N5O3/c1-16-20(17-6-3-2-4-7-17)11-22(26(39)37(16)15-29(30,31)32)35-25(38)19-10-18-12-28(13-23(18)34-14-19)21-8-5-9-33-24(21)36-27(28)40/h2-10,14,16,20,22H,11-13,15H2,1H3,(H,35,38)(H,33,36,40)/t16-,20-,22+,28+/m1/s1
InChI KeyDDOOFTLHJSMHLN-ZQHRPCGSSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids and derivatives
Alternative Parents
Substituents
  • N-acyl-alpha amino acid or derivatives
  • Phenylpiperidine
  • Pyridine carboxylic acid or derivatives
  • Pyrrolopyridine
  • Delta-lactam
  • Piperidinone
  • Monocyclic benzene moiety
  • Piperidine
  • Pyridine
  • Benzenoid
  • Imidolactam
  • Heteroaromatic compound
  • Tertiary carboxylic acid amide
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Lactam
  • Azacycle
  • Organoheterocyclic compound
  • Carbonyl group
  • Organonitrogen compound
  • Organofluoride
  • Organohalogen compound
  • Organic oxygen compound
  • Organooxygen compound
  • Organic nitrogen compound
  • Organic oxide
  • Alkyl halide
  • Hydrocarbon derivative
  • Alkyl fluoride
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.06ALOGPS
logP3.07ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)11.74ChemAxon
pKa (Strongest Basic)3.83ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area104.29 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity140.97 m³·mol⁻¹ChemAxon
Polarizability53.19 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+224.81232859911
AllCCS[M+H-H2O]+223.31932859911
AllCCS[M+Na]+226.54632859911
AllCCS[M+NH4]+226.16332859911
AllCCS[M-H]-217.66732859911
AllCCS[M+Na-2H]-218.92832859911
AllCCS[M+HCOO]-220.46332859911
DeepCCS[M-2H]-253.33630932474
DeepCCS[M+Na]+227.93230932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ubrogepant,1TMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)NC2=NC=CC=C24)[Si](C)(C)C)C(=O)N1CC(F)(F)F4021.4Semi standard non polar33892256
Ubrogepant,1TMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)NC2=NC=CC=C24)[Si](C)(C)C)C(=O)N1CC(F)(F)F3928.5Standard non polar33892256
Ubrogepant,1TMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)NC2=NC=CC=C24)[Si](C)(C)C)C(=O)N1CC(F)(F)F5262.5Standard polar33892256
Ubrogepant,1TMS,isomer #2C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](NC(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C)C2=NC=CC=C24)C(=O)N1CC(F)(F)F3903.8Semi standard non polar33892256
Ubrogepant,1TMS,isomer #2C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](NC(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C)C2=NC=CC=C24)C(=O)N1CC(F)(F)F3872.4Standard non polar33892256
Ubrogepant,1TMS,isomer #2C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](NC(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C)C2=NC=CC=C24)C(=O)N1CC(F)(F)F4918.9Standard polar33892256
Ubrogepant,2TMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C)C2=NC=CC=C24)[Si](C)(C)C)C(=O)N1CC(F)(F)F3851.3Semi standard non polar33892256
Ubrogepant,2TMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C)C2=NC=CC=C24)[Si](C)(C)C)C(=O)N1CC(F)(F)F3958.7Standard non polar33892256
Ubrogepant,2TMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C)C2=NC=CC=C24)[Si](C)(C)C)C(=O)N1CC(F)(F)F4658.3Standard polar33892256
Ubrogepant,1TBDMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)NC2=NC=CC=C24)[Si](C)(C)C(C)(C)C)C(=O)N1CC(F)(F)F4224.7Semi standard non polar33892256
Ubrogepant,1TBDMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)NC2=NC=CC=C24)[Si](C)(C)C(C)(C)C)C(=O)N1CC(F)(F)F4139.2Standard non polar33892256
Ubrogepant,1TBDMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)NC2=NC=CC=C24)[Si](C)(C)C(C)(C)C)C(=O)N1CC(F)(F)F5318.0Standard polar33892256
Ubrogepant,1TBDMS,isomer #2C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](NC(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C(C)(C)C)C2=NC=CC=C24)C(=O)N1CC(F)(F)F4147.3Semi standard non polar33892256
Ubrogepant,1TBDMS,isomer #2C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](NC(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C(C)(C)C)C2=NC=CC=C24)C(=O)N1CC(F)(F)F4078.5Standard non polar33892256
Ubrogepant,1TBDMS,isomer #2C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](NC(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C(C)(C)C)C2=NC=CC=C24)C(=O)N1CC(F)(F)F4955.0Standard polar33892256
Ubrogepant,2TBDMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C(C)(C)C)C2=NC=CC=C24)[Si](C)(C)C(C)(C)C)C(=O)N1CC(F)(F)F4256.2Semi standard non polar33892256
Ubrogepant,2TBDMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C(C)(C)C)C2=NC=CC=C24)[Si](C)(C)C(C)(C)C)C(=O)N1CC(F)(F)F4359.5Standard non polar33892256
Ubrogepant,2TBDMS,isomer #1C[C@@H]1[C@H](C2=CC=CC=C2)C[C@H](N(C(=O)C2=CN=C3C[C@]4(CC3=C2)C(=O)N([Si](C)(C)C(C)(C)C)C2=NC=CC=C24)[Si](C)(C)C(C)(C)C)C(=O)N1CC(F)(F)F4730.4Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ubrogepant 10V, Positive-QTOFsplash10-0udi-0000090000-0cfe5a983cdb8891b7ed2021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ubrogepant 20V, Positive-QTOFsplash10-0udi-0190170000-ca1059f86268a85b56f62021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ubrogepant 40V, Positive-QTOFsplash10-01oy-1493110000-d4c775974e4f4f00f4232021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ubrogepant 10V, Negative-QTOFsplash10-0002-0000090000-cf0099572a2416f866bf2021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ubrogepant 20V, Negative-QTOFsplash10-0002-1030290000-5ce776e3f083d87e95d42021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ubrogepant 40V, Negative-QTOFsplash10-0573-3393150000-6cb6bb1cf6148044bcba2021-10-22Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID28536135
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound68748835
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available