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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:35:36 UTC
Update Date2022-03-07 02:52:28 UTC
HMDB IDHMDB0030234
Secondary Accession Numbers
  • HMDB30234
Metabolite Identification
Common NameXanthohumol C
DescriptionXanthohumol C belongs to the class of organic compounds known as 2'-hydroxychalcones. These are organic compounds containing chalcone skeleton that carries a hydroxyl group at the 2'-position. Thus, xanthohumol C is considered to be a flavonoid. Based on a literature review very few articles have been published on Xanthohumol C.
Structure
Data?1563861957
Synonyms
ValueSource
DehydrocycloxanthohumolHMDB
5''-Hydroxy-6'',6''-dimethyldihydropyrano(2'',3''-b)-4,4'-dihydroxy-6'-methoxychalconeHMDB
Chemical FormulaC21H20O5
Average Molecular Weight352.3805
Monoisotopic Molecular Weight352.13107375
IUPAC Name(2E)-1-(5-hydroxy-7-methoxy-2,2-dimethyl-2H-chromen-6-yl)-3-(4-hydroxyphenyl)prop-2-en-1-one
Traditional Namexanthohumol C
CAS Registry Number189299-05-6
SMILES
COC1=C(C(=O)\C=C\C2=CC=C(O)C=C2)C(O)=C2C=CC(C)(C)OC2=C1
InChI Identifier
InChI=1S/C21H20O5/c1-21(2)11-10-15-17(26-21)12-18(25-3)19(20(15)24)16(23)9-6-13-4-7-14(22)8-5-13/h4-12,22,24H,1-3H3/b9-6+
InChI KeyCVMUWVCGBFJJFI-RMKNXTFCSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 2'-hydroxychalcones. These are organic compounds containing chalcone skeleton that carries a hydroxyl group at the 2'-position.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassLinear 1,3-diarylpropanoids
Sub ClassChalcones and dihydrochalcones
Direct Parent2'-Hydroxychalcones
Alternative Parents
Substituents
  • 2'-hydroxychalcone
  • Hydroxycinnamic acid or derivatives
  • 2,2-dimethyl-1-benzopyran
  • Benzopyran
  • 1-benzopyran
  • Anisole
  • Styrene
  • Aryl ketone
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Acryloyl-group
  • Enone
  • Vinylogous acid
  • Alpha,beta-unsaturated ketone
  • Ketone
  • Organoheterocyclic compound
  • Ether
  • Oxacycle
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.8 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0084 g/LALOGPS
logP4.17ALOGPS
logP4.68ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)8.04ChemAxon
pKa (Strongest Basic)-4.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area75.99 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity101.7 m³·mol⁻¹ChemAxon
Polarizability38.28 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+187.72530932474
DeepCCS[M-H]-185.36730932474
DeepCCS[M-2H]-219.12630932474
DeepCCS[M+Na]+194.35430932474
AllCCS[M+H]+187.032859911
AllCCS[M+H-H2O]+183.732859911
AllCCS[M+NH4]+190.132859911
AllCCS[M+Na]+191.032859911
AllCCS[M-H]-186.332859911
AllCCS[M+Na-2H]-186.132859911
AllCCS[M+HCOO]-186.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Xanthohumol CCOC1=C(C(=O)\C=C\C2=CC=C(O)C=C2)C(O)=C2C=CC(C)(C)OC2=C14393.3Standard polar33892256
Xanthohumol CCOC1=C(C(=O)\C=C\C2=CC=C(O)C=C2)C(O)=C2C=CC(C)(C)OC2=C13062.3Standard non polar33892256
Xanthohumol CCOC1=C(C(=O)\C=C\C2=CC=C(O)C=C2)C(O)=C2C=CC(C)(C)OC2=C13381.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Xanthohumol C,1TMS,isomer #1COC1=CC2=C(C=CC(C)(C)O2)C(O)=C1C(=O)/C=C/C1=CC=C(O[Si](C)(C)C)C=C13118.5Semi standard non polar33892256
Xanthohumol C,1TMS,isomer #2COC1=CC2=C(C=CC(C)(C)O2)C(O[Si](C)(C)C)=C1C(=O)/C=C/C1=CC=C(O)C=C13134.0Semi standard non polar33892256
Xanthohumol C,2TMS,isomer #1COC1=CC2=C(C=CC(C)(C)O2)C(O[Si](C)(C)C)=C1C(=O)/C=C/C1=CC=C(O[Si](C)(C)C)C=C13141.5Semi standard non polar33892256
Xanthohumol C,1TBDMS,isomer #1COC1=CC2=C(C=CC(C)(C)O2)C(O)=C1C(=O)/C=C/C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C13429.9Semi standard non polar33892256
Xanthohumol C,1TBDMS,isomer #2COC1=CC2=C(C=CC(C)(C)O2)C(O[Si](C)(C)C(C)(C)C)=C1C(=O)/C=C/C1=CC=C(O)C=C13407.2Semi standard non polar33892256
Xanthohumol C,2TBDMS,isomer #1COC1=CC2=C(C=CC(C)(C)O2)C(O[Si](C)(C)C(C)(C)C)=C1C(=O)/C=C/C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C13709.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Xanthohumol C GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-0429000000-e235ce268965e41aede32017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthohumol C GC-MS (2 TMS) - 70eV, Positivesplash10-05ur-4244900000-ee56d20dd991d04414f82017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthohumol C GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 10V, Positive-QTOFsplash10-0udi-0019000000-6bbb1e200c58b77789d12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 20V, Positive-QTOFsplash10-0uej-1489000000-38ed5a894a5ebbdaf71d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 40V, Positive-QTOFsplash10-014i-4940000000-f77acefd3178df24c7ab2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 10V, Negative-QTOFsplash10-0udi-0139000000-d06a83cb63bb0fca48432016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 20V, Negative-QTOFsplash10-0pb9-0696000000-82633902348d0f8f8cfd2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 40V, Negative-QTOFsplash10-014r-0981000000-4318ba91467241c8f4412016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 10V, Positive-QTOFsplash10-0udi-0009000000-6e92c793e36e9b62bce62021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 20V, Positive-QTOFsplash10-001i-0490000000-2b9625a88cc3a8bdaaee2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 40V, Positive-QTOFsplash10-05ox-3950000000-6466939a926e2f4cf0842021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 10V, Negative-QTOFsplash10-0udi-0039000000-f1a9d07fa54640c703b62021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 20V, Negative-QTOFsplash10-0udi-0339000000-edf7c4563609f50e5b152021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthohumol C 40V, Negative-QTOFsplash10-014i-5902000000-a777b002cf247e6874052021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002056
KNApSAcK IDC00014476
Chemspider ID8513534
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10338075
PDB IDNot Available
ChEBI ID567477
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1818191
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .