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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 17:39:59 UTC

Update Date

2023-02-21 17:19:47 UTC

HMDB ID

HMDB0030945

Secondary Accession Numbers

HMDB30945

Metabolite Identification

Common Name

Methyl 2-undecynoate

Description

Methyl 2-undecynoate belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid. Based on a literature review a small amount of articles have been published on Methyl 2-undecynoate.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0030945
     RDKit          3D
Methyl 2-undecynoate
 34 33  0  0  0  0  0  0  0  0999 V2000
    4.6309    0.5847    1.3574 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8313    1.3982    0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568    0.5048   -0.4913 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0375   -0.2366    0.4326 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1570   -1.1555   -0.3624 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3344   -0.3690   -1.3358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5816   -1.2887   -2.1392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5275   -2.0450   -1.2647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3991   -1.1347   -0.4910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1176   -0.4076    0.1502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9905    0.4462    0.9300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5795    0.9080    2.0280 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2580    0.7802    0.5259 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1424    1.6101    1.2565 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6852    0.9602    1.3482 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6300   -0.4961    1.1224 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2253    0.7005    2.3875 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1867    2.1011    0.9460 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5039    2.0114   -0.2652 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5389   -0.1568   -1.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3359    1.1884   -1.1427 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6052   -0.7886    1.2318 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3535    0.5130    0.9101 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4873   -1.7611    0.3006 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8333   -1.8156   -0.9538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2165    0.4769   -0.8843 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0295    0.0628   -2.1184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1509   -0.7134   -2.8719 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0513   -2.0071   -2.6704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1571   -2.6727   -1.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0715   -2.7443   -0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2633    2.5535    0.6764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7852    1.8443    2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1732    1.1486    1.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  3  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
 14 32  1  0
 14 33  1  0
 14 34  1  0
M  END

HMDB0030945
     RDKit          3D
Methyl 2-undecynoate
 34 33  0  0  0  0  0  0  0  0999 V2000
    4.6309    0.5847    1.3574 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8313    1.3982    0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568    0.5048   -0.4913 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0375   -0.2366    0.4326 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1570   -1.1555   -0.3624 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3344   -0.3690   -1.3358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5816   -1.2887   -2.1392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5275   -2.0450   -1.2647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3991   -1.1347   -0.4910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1176   -0.4076    0.1502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9905    0.4462    0.9300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5795    0.9080    2.0280 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2580    0.7802    0.5259 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1424    1.6101    1.2565 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6852    0.9602    1.3482 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6300   -0.4961    1.1224 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2253    0.7005    2.3875 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1867    2.1011    0.9460 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5039    2.0114   -0.2652 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5389   -0.1568   -1.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3359    1.1884   -1.1427 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6052   -0.7886    1.2318 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3535    0.5130    0.9101 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4873   -1.7611    0.3006 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8333   -1.8156   -0.9538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2165    0.4769   -0.8843 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0295    0.0628   -2.1184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1509   -0.7134   -2.8719 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0513   -2.0071   -2.6704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1571   -2.6727   -1.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0715   -2.7443   -0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2633    2.5535    0.6764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7852    1.8443    2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1732    1.1486    1.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  3  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
 14 32  1  0
 14 33  1  0
 14 34  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      21.601   6.311   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      16.266   4.771   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      17.599   5.541   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      18.933   6.311   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      18.933   7.851   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      20.267   5.541   0.000  0.00  0.00           O+0
CONECT    1    3                                                            
CONECT    2   14                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14    2   12                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

COMPND    HMDB0030945
HETATM    1  C1  UNL     1       4.631   0.585   1.357  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.831   1.398   0.380  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.957   0.505  -0.491  1.00  0.00           C  
HETATM    4  C4  UNL     1       2.037  -0.237   0.433  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.157  -1.155  -0.362  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.334  -0.369  -1.336  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.582  -1.289  -2.139  1.00  0.00           C  
HETATM    8  C8  UNL     1      -1.528  -2.045  -1.265  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.399  -1.135  -0.491  1.00  0.00           C  
HETATM   10  C10 UNL     1      -3.118  -0.408   0.150  1.00  0.00           C  
HETATM   11  C11 UNL     1      -3.990   0.446   0.930  1.00  0.00           C  
HETATM   12  O1  UNL     1      -3.579   0.908   2.028  1.00  0.00           O  
HETATM   13  O2  UNL     1      -5.258   0.780   0.526  1.00  0.00           O  
HETATM   14  C12 UNL     1      -6.142   1.610   1.256  1.00  0.00           C  
HETATM   15  H1  UNL     1       5.685   0.960   1.348  1.00  0.00           H  
HETATM   16  H2  UNL     1       4.630  -0.496   1.122  1.00  0.00           H  
HETATM   17  H3  UNL     1       4.225   0.701   2.387  1.00  0.00           H  
HETATM   18  H4  UNL     1       3.187   2.101   0.946  1.00  0.00           H  
HETATM   19  H5  UNL     1       4.504   2.011  -0.265  1.00  0.00           H  
HETATM   20  H6  UNL     1       3.539  -0.157  -1.132  1.00  0.00           H  
HETATM   21  H7  UNL     1       2.336   1.188  -1.143  1.00  0.00           H  
HETATM   22  H8  UNL     1       2.605  -0.789   1.232  1.00  0.00           H  
HETATM   23  H9  UNL     1       1.353   0.513   0.910  1.00  0.00           H  
HETATM   24  H10 UNL     1       0.487  -1.761   0.301  1.00  0.00           H  
HETATM   25  H11 UNL     1       1.833  -1.816  -0.954  1.00  0.00           H  
HETATM   26  H12 UNL     1      -0.217   0.477  -0.884  1.00  0.00           H  
HETATM   27  H13 UNL     1       1.030   0.063  -2.118  1.00  0.00           H  
HETATM   28  H14 UNL     1      -1.151  -0.713  -2.872  1.00  0.00           H  
HETATM   29  H15 UNL     1       0.051  -2.007  -2.670  1.00  0.00           H  
HETATM   30  H16 UNL     1      -2.157  -2.673  -1.961  1.00  0.00           H  
HETATM   31  H17 UNL     1      -1.072  -2.744  -0.566  1.00  0.00           H  
HETATM   32  H18 UNL     1      -6.263   2.553   0.676  1.00  0.00           H  
HETATM   33  H19 UNL     1      -5.785   1.844   2.269  1.00  0.00           H  
HETATM   34  H20 UNL     1      -7.173   1.149   1.261  1.00  0.00           H  
CONECT    1    2   15   16   17
CONECT    2    3   18   19
CONECT    3    4   20   21
CONECT    4    5   22   23
CONECT    5    6   24   25
CONECT    6    7   26   27
CONECT    7    8   28   29
CONECT    8    9   30   31
CONECT    9   10   10   10
CONECT   10   11
CONECT   11   12   12   13
CONECT   13   14
CONECT   14   32   33   34
END

HMDB0030945
     RDKit          3D
Methyl 2-undecynoate
 34 33  0  0  0  0  0  0  0  0999 V2000
    4.6309    0.5847    1.3574 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8313    1.3982    0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568    0.5048   -0.4913 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0375   -0.2366    0.4326 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1570   -1.1555   -0.3624 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3344   -0.3690   -1.3358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5816   -1.2887   -2.1392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5275   -2.0450   -1.2647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3991   -1.1347   -0.4910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1176   -0.4076    0.1502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9905    0.4462    0.9300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5795    0.9080    2.0280 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2580    0.7802    0.5259 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1424    1.6101    1.2565 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6852    0.9602    1.3482 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6300   -0.4961    1.1224 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2253    0.7005    2.3875 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1867    2.1011    0.9460 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5039    2.0114   -0.2652 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5389   -0.1568   -1.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3359    1.1884   -1.1427 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6052   -0.7886    1.2318 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3535    0.5130    0.9101 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4873   -1.7611    0.3006 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8333   -1.8156   -0.9538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2165    0.4769   -0.8843 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0295    0.0628   -2.1184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1509   -0.7134   -2.8719 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0513   -2.0071   -2.6704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1571   -2.6727   -1.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0715   -2.7443   -0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2633    2.5535    0.6764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7852    1.8443    2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1732    1.1486    1.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  3  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
 14 32  1  0
 14 33  1  0
 14 34  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Methyl 2-undecynoic acid	Generator
2-Undecynoic acid, methyl ester	HMDB
FEMA 2751	HMDB
Methyl decine carbonate	HMDB
Methyl decyne carbonate	HMDB

Chemical Formula

C₁₂H₂₀O₂

Average Molecular Weight

196.286

Monoisotopic Molecular Weight

196.146329884

IUPAC Name

methyl undec-2-ynoate

Traditional Name

methyl undec-2-ynoate

CAS Registry Number

10522-18-6

SMILES

CCCCCCCCC#CC(=O)OC

InChI Identifier

InChI=1S/C12H20O2/c1-3-4-5-6-7-8-9-10-11-12(13)14-2/h3-9H2,1-2H3

InChI Key

YPUZOJRRZPRXNV-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Fatty acid esters

Alternative Parents

Substituents

Fatty acid ester
Alpha,beta-unsaturated carboxylic ester
Ynoate ester
Methyl ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Cellular substructure

Excreta

Biofluid or Excreta

Urine (HMDB: HMDB0030945)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0030945)

Source

Endogenous

Endogenous (HMDB: HMDB0030945)

Animal

Animal (HMDB: HMDB0030945)

Exogenous

Food

Food (HMDB: HMDB0030945)

Exogenous (HMDB: HMDB0030945)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0030945)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0030945)

Lipid metabolism pathway (HMDB: HMDB0030945)

Cellular process

Cell signaling (HMDB: HMDB0030945)

Biochemical process

Lipid transport (HMDB: HMDB0030945)

Role

Biological role

Energy source (HMDB: HMDB0030945)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0030945)

Food and nutrition

Food additive

Flavoring agent

Flavoring Agent (HMDB: HMDB0030945)

Physical Properties

State

Liquid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	230.00 °C. @ 760.00 mm Hg	The Good Scents Company Information System
Water Solubility	15.05 mg/L @ 25 °C (est)	The Good Scents Company Information System
LogP	4.748 (est)	The Good Scents Company Information System

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.0066 g/L	ALOGPS
logP	4.66	ALOGPS
logP	4.51	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Basic)	-7.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	58.26 m³·mol⁻¹	ChemAxon
Polarizability	24.67 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	150.815	31661259
DarkChem	[M-H]-	150.061	31661259
DeepCCS	[M+H]+	139.412	30932474
DeepCCS	[M-H]-	135.388	30932474
DeepCCS	[M-2H]-	172.755	30932474
DeepCCS	[M+Na]+	148.427	30932474
AllCCS	[M+H]+	151.2	32859911
AllCCS	[M+H-H2O]+	147.4	32859911
AllCCS	[M+NH4]+	154.6	32859911
AllCCS	[M+Na]+	155.6	32859911
AllCCS	[M-H]-	152.5	32859911
AllCCS	[M+Na-2H]-	153.9	32859911
AllCCS	[M+HCOO]-	155.5	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	9.14 minutes	32390414
Predicted by Siyang on May 30, 2022	18.5811 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	2.49 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	28.4 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2398.3 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	588.3 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	231.7 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	375.7 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	402.7 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	805.7 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	858.9 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	106.3 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1645.2 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	484.4 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1604.2 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	491.0 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	385.2 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	660.6 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	540.3 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	14.2 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Methyl 2-undecynoate	CCCCCCCCC#CC(=O)OC	2120.1	Standard polar	33892256
Methyl 2-undecynoate	CCCCCCCCC#CC(=O)OC	1436.7	Standard non polar	33892256
Methyl 2-undecynoate	CCCCCCCCC#CC(=O)OC	1457.6	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Methyl 2-undecynoate GC-MS (Non-derivatized) - 70eV, Positive	splash10-052e-9300000000-b07cb91804f11274987d	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Methyl 2-undecynoate GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 10V, Positive-QTOF	splash10-00kb-0900000000-6d78d2d67c371738e2a2	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 20V, Positive-QTOF	splash10-00kk-5900000000-328f507ce7bd417481c7	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 40V, Positive-QTOF	splash10-052f-9100000000-b29bc1591f83d99ebd3f	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 10V, Negative-QTOF	splash10-0002-0900000000-048c0c034dfba7bcd6b4	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 20V, Negative-QTOF	splash10-01ot-1900000000-4723a307cf639c5f135a	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 40V, Negative-QTOF	splash10-092c-9800000000-7048400543b47dbc3b8d	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 10V, Positive-QTOF	splash10-05qa-9600000000-e99efb840dac678c1f17	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 20V, Positive-QTOF	splash10-0api-9100000000-119c6f63d9d888199572	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 40V, Positive-QTOF	splash10-00nf-9000000000-11bb46093b2cd3eff4f6	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 10V, Negative-QTOF	splash10-03dj-0900000000-7993711dfbd618a12e68	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 20V, Negative-QTOF	splash10-01ot-1900000000-7f5bef881296ff46e1d5	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Methyl 2-undecynoate 40V, Negative-QTOF	splash10-066r-9200000000-05332ae58998246d9070	2021-09-25	Wishart Lab	View Spectrum

IR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted IR Spectrum	IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)	2023-02-03	FELIX lab	View Spectrum
Predicted IR Spectrum	IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)	2023-02-03	FELIX lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB002921

KNApSAcK ID

Not Available

Chemspider ID

55444

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

61524

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

rw1033001

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Methyl 2-undecynoate (HMDB0030945)

MOL for HMDB0030945 (Methyl 2-undecynoate)

3D MOL for HMDB0030945 (Methyl 2-undecynoate)

3D SDF for HMDB0030945 (Methyl 2-undecynoate)

3D-SDF for HMDB0030945 (Methyl 2-undecynoate)

PDB for HMDB0030945 (Methyl 2-undecynoate)

3D PDB for HMDB0030945 (Methyl 2-undecynoate)

SMILES for HMDB0030945 (Methyl 2-undecynoate)

INCHI for HMDB0030945 (Methyl 2-undecynoate)

Structure for HMDB0030945 (Methyl 2-undecynoate)

3D Structure for HMDB0030945 (Methyl 2-undecynoate)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra

IR Spectra