Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 20:18:04 UTC
Update Date2022-03-07 02:54:28 UTC
HMDB IDHMDB0035337
Secondary Accession Numbers
  • HMDB35337
Metabolite Identification
Common NameSterebin A
DescriptionSterebin A belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review a small amount of articles have been published on Sterebin A.
Structure
Data?1563862703
Synonyms
ValueSource
6a,7b,8a-Trihydroxy-14,15-dinor-11-labden-13-oneHMDB
Chemical FormulaC18H30O4
Average Molecular Weight310.4284
Monoisotopic Molecular Weight310.214409448
IUPAC Name(3E)-4-(2,3,4-trihydroxy-2,5,5,8a-tetramethyl-decahydronaphthalen-1-yl)but-3-en-2-one
Traditional Name(3E)-4-(2,3,4-trihydroxy-2,5,5,8a-tetramethyl-hexahydro-1H-naphthalen-1-yl)but-3-en-2-one
CAS Registry Number107647-14-3
SMILES
CC(=O)\C=C\C1C(C)(O)C(O)C(O)C2C(C)(C)CCCC12C
InChI Identifier
InChI=1S/C18H30O4/c1-11(19)7-8-12-17(4)10-6-9-16(2,3)14(17)13(20)15(21)18(12,5)22/h7-8,12-15,20-22H,6,9-10H2,1-5H3/b8-7+
InChI KeyGUVJPXABQYFWPD-BQYQJAHWSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Megastigmane sesquiterpenoid
  • Sesquiterpenoid
  • Cyclitol or derivatives
  • Acryloyl-group
  • Cyclic alcohol
  • Alpha,beta-unsaturated ketone
  • Tertiary alcohol
  • Enone
  • Secondary alcohol
  • Ketone
  • Polyol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Alcohol
  • Organooxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point157 - 158 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility121.6 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.56 g/LALOGPS
logP1.8ALOGPS
logP1.64ChemAxon
logS-2.7ALOGPS
pKa (Strongest Acidic)12.91ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area77.76 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity86.54 m³·mol⁻¹ChemAxon
Polarizability35.18 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-202.63830932474
DeepCCS[M+Na]+177.86630932474
AllCCS[M+H]+175.332859911
AllCCS[M+H-H2O]+172.332859911
AllCCS[M+NH4]+178.132859911
AllCCS[M+Na]+178.932859911
AllCCS[M-H]-180.932859911
AllCCS[M+Na-2H]-181.532859911
AllCCS[M+HCOO]-182.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Sterebin ACC(=O)\C=C\C1C(C)(O)C(O)C(O)C2C(C)(C)CCCC12C3610.1Standard polar33892256
Sterebin ACC(=O)\C=C\C1C(C)(O)C(O)C(O)C2C(C)(C)CCCC12C2380.2Standard non polar33892256
Sterebin ACC(=O)\C=C\C1C(C)(O)C(O)C(O)C2C(C)(C)CCCC12C2510.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Sterebin A,1TMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O)C1(C)O[Si](C)(C)C2601.4Semi standard non polar33892256
Sterebin A,1TMS,isomer #2CC(=O)/C=C/C1C(C)(O)C(O[Si](C)(C)C)C(O)C2C(C)(C)CCCC21C2599.1Semi standard non polar33892256
Sterebin A,1TMS,isomer #3CC(=O)/C=C/C1C(C)(O)C(O)C(O[Si](C)(C)C)C2C(C)(C)CCCC21C2586.6Semi standard non polar33892256
Sterebin A,1TMS,isomer #4C=C(/C=C/C1C(C)(O)C(O)C(O)C2C(C)(C)CCCC21C)O[Si](C)(C)C2693.7Semi standard non polar33892256
Sterebin A,2TMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C)C(O)C1(C)O[Si](C)(C)C2538.6Semi standard non polar33892256
Sterebin A,2TMS,isomer #2CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O[Si](C)(C)C)C1(C)O[Si](C)(C)C2553.5Semi standard non polar33892256
Sterebin A,2TMS,isomer #3C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2608.9Semi standard non polar33892256
Sterebin A,2TMS,isomer #4CC(=O)/C=C/C1C(C)(O)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C2C(C)(C)CCCC21C2535.8Semi standard non polar33892256
Sterebin A,2TMS,isomer #5C=C(/C=C/C1C(C)(O)C(O[Si](C)(C)C)C(O)C2C(C)(C)CCCC21C)O[Si](C)(C)C2588.1Semi standard non polar33892256
Sterebin A,2TMS,isomer #6C=C(/C=C/C1C(C)(O)C(O)C(O[Si](C)(C)C)C2C(C)(C)CCCC21C)O[Si](C)(C)C2589.2Semi standard non polar33892256
Sterebin A,3TMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1(C)O[Si](C)(C)C2551.3Semi standard non polar33892256
Sterebin A,3TMS,isomer #2C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C)C(O)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2565.4Semi standard non polar33892256
Sterebin A,3TMS,isomer #3C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O[Si](C)(C)C)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2565.2Semi standard non polar33892256
Sterebin A,3TMS,isomer #4C=C(/C=C/C1C(C)(O)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C2C(C)(C)CCCC21C)O[Si](C)(C)C2558.8Semi standard non polar33892256
Sterebin A,4TMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2583.1Semi standard non polar33892256
Sterebin A,4TMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2551.6Standard non polar33892256
Sterebin A,1TBDMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O)C1(C)O[Si](C)(C)C(C)(C)C2850.6Semi standard non polar33892256
Sterebin A,1TBDMS,isomer #2CC(=O)/C=C/C1C(C)(O)C(O[Si](C)(C)C(C)(C)C)C(O)C2C(C)(C)CCCC21C2828.5Semi standard non polar33892256
Sterebin A,1TBDMS,isomer #3CC(=O)/C=C/C1C(C)(O)C(O)C(O[Si](C)(C)C(C)(C)C)C2C(C)(C)CCCC21C2833.4Semi standard non polar33892256
Sterebin A,1TBDMS,isomer #4C=C(/C=C/C1C(C)(O)C(O)C(O)C2C(C)(C)CCCC21C)O[Si](C)(C)C(C)(C)C2927.1Semi standard non polar33892256
Sterebin A,2TBDMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C(C)(C)C)C(O)C1(C)O[Si](C)(C)C(C)(C)C3001.9Semi standard non polar33892256
Sterebin A,2TBDMS,isomer #2CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C3008.8Semi standard non polar33892256
Sterebin A,2TBDMS,isomer #3C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3072.8Semi standard non polar33892256
Sterebin A,2TBDMS,isomer #4CC(=O)/C=C/C1C(C)(O)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C2C(C)(C)CCCC21C3006.2Semi standard non polar33892256
Sterebin A,2TBDMS,isomer #5C=C(/C=C/C1C(C)(O)C(O[Si](C)(C)C(C)(C)C)C(O)C2C(C)(C)CCCC21C)O[Si](C)(C)C(C)(C)C3043.0Semi standard non polar33892256
Sterebin A,2TBDMS,isomer #6C=C(/C=C/C1C(C)(O)C(O)C(O[Si](C)(C)C(C)(C)C)C2C(C)(C)CCCC21C)O[Si](C)(C)C(C)(C)C3066.0Semi standard non polar33892256
Sterebin A,3TBDMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C3229.8Semi standard non polar33892256
Sterebin A,3TBDMS,isomer #2C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C(C)(C)C)C(O)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3247.3Semi standard non polar33892256
Sterebin A,3TBDMS,isomer #3C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O)C(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3247.0Semi standard non polar33892256
Sterebin A,3TBDMS,isomer #4C=C(/C=C/C1C(C)(O)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C2C(C)(C)CCCC21C)O[Si](C)(C)C(C)(C)C3249.1Semi standard non polar33892256
Sterebin A,4TBDMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3465.7Semi standard non polar33892256
Sterebin A,4TBDMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3349.6Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin A GC-MS (Non-derivatized) - 70eV, Positivesplash10-000b-0490000000-2aa4276764e3698c3d672017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin A GC-MS (3 TMS) - 70eV, Positivesplash10-03di-3124590000-9880a69a657a126edb8e2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin A GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin A GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 10V, Positive-QTOFsplash10-01ox-1093000000-2e9af314574f6bb8e8812016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 20V, Positive-QTOFsplash10-0gxx-3091000000-0e877612bc9f71cf34512016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 40V, Positive-QTOFsplash10-01bc-9250000000-f7635380d96c1fd321dc2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 10V, Negative-QTOFsplash10-0a4i-0049000000-0a39289fa34fc697f4d72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 20V, Negative-QTOFsplash10-0a4l-0094000000-ab4ea454ab68086bbda92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 40V, Negative-QTOFsplash10-052f-1190000000-d57901b6fa47ec9c67bf2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 10V, Negative-QTOFsplash10-0a4i-0009000000-f439b3631ca110b7c8ba2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 20V, Negative-QTOFsplash10-0a4i-1079000000-61f64aceaa038f844d772021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 40V, Negative-QTOFsplash10-009f-0090000000-40ba2b86f5ac5cfe94662021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 10V, Positive-QTOFsplash10-03di-0589000000-b700dd389a285952f4802021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 20V, Positive-QTOFsplash10-0330-9650000000-ec9cc0f95c9aa5bb63ee2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin A 40V, Positive-QTOFsplash10-0296-9400000000-6d405904c4f81e4460be2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014009
KNApSAcK IDC00023382
Chemspider ID35013904
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131751709
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1849241
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.