Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 22:34:33 UTC
Update Date2022-03-07 02:55:17 UTC
HMDB IDHMDB0037338
Secondary Accession Numbers
  • HMDB37338
Metabolite Identification
Common NameAmericanin B
DescriptionAmericanin B belongs to the class of organic compounds known as phenylbenzo-1,4-dioxanes. These are benzo-1,3-dioxanes having a phenyl group attached to the 1,4-dioxane moiety. Americanin B has been detected, but not quantified in, fruits. This could make americanin b a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Americanin B.
Structure
Data?1563863013
Synonyms
ValueSource
Americanin bMeSH
Chemical FormulaC27H24O9
Average Molecular Weight492.4741
Monoisotopic Molecular Weight492.142032366
IUPAC Name(2E)-3-{3-[2-(3,4-dihydroxyphenyl)-3-(hydroxymethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]-2-(hydroxymethyl)-2,3-dihydro-1,4-benzodioxin-6-yl}prop-2-enal
Traditional Name(2E)-3-{3-[2-(3,4-dihydroxyphenyl)-3-(hydroxymethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]-2-(hydroxymethyl)-2,3-dihydro-1,4-benzodioxin-6-yl}prop-2-enal
CAS Registry Number77053-44-2
SMILES
OCC1OC2=C(OC1C1=CC3=C(OC(C(CO)O3)C3=CC(O)=C(O)C=C3)C=C1)C=C(\C=C\C=O)C=C2
InChI Identifier
InChI=1S/C27H24O9/c28-9-1-2-15-3-7-20-22(10-15)36-27(24(13-29)33-20)17-5-8-21-23(12-17)34-25(14-30)26(35-21)16-4-6-18(31)19(32)11-16/h1-12,24-27,29-32H,13-14H2/b2-1+
InChI KeyVDIFGESBHJLSFS-OWOJBTEDSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenylbenzo-1,4-dioxanes. These are benzo-1,3-dioxanes having a phenyl group attached to the 1,4-dioxane moiety.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzodioxanes
Sub ClassPhenylbenzodioxanes
Direct ParentPhenylbenzo-1,4-dioxanes
Alternative Parents
Substituents
  • 2-phenylbenzo-1,4-dioxane
  • Benzo-1,4-dioxane
  • Catechol
  • Styrene
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Monocyclic benzene moiety
  • Para-dioxin
  • Benzenoid
  • Enal
  • Alpha,beta-unsaturated aldehyde
  • Ether
  • Oxacycle
  • Aldehyde
  • Organooxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Alcohol
  • Organic oxygen compound
  • Primary alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point258 - 260 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility20.73 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.021 g/LALOGPS
logP3.1ALOGPS
logP2.7ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)9.21ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area134.91 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity128.5 m³·mol⁻¹ChemAxon
Polarizability50.51 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+210.29430932474
DeepCCS[M-H]-207.89830932474
DeepCCS[M-2H]-240.78130932474
DeepCCS[M+Na]+216.30430932474
AllCCS[M+H]+214.132859911
AllCCS[M+H-H2O]+212.332859911
AllCCS[M+NH4]+215.632859911
AllCCS[M+Na]+216.132859911
AllCCS[M-H]-207.032859911
AllCCS[M+Na-2H]-207.432859911
AllCCS[M+HCOO]-207.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.85 minutes32390414
Predicted by Siyang on May 30, 202212.2658 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.63 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid36.1 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2419.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid197.0 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid191.4 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid166.7 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid120.0 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid594.4 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid493.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)143.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1046.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid506.3 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1460.5 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid367.3 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid327.2 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate283.0 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA127.2 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water10.3 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Americanin BOCC1OC2=C(OC1C1=CC3=C(OC(C(CO)O3)C3=CC(O)=C(O)C=C3)C=C1)C=C(\C=C\C=O)C=C25775.0Standard polar33892256
Americanin BOCC1OC2=C(OC1C1=CC3=C(OC(C(CO)O3)C3=CC(O)=C(O)C=C3)C=C1)C=C(\C=C\C=O)C=C24486.5Standard non polar33892256
Americanin BOCC1OC2=C(OC1C1=CC3=C(OC(C(CO)O3)C3=CC(O)=C(O)C=C3)C=C1)C=C(\C=C\C=O)C=C24826.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Americanin B,1TMS,isomer #1C[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O)C(O)=C3)C(CO)OC2=C14756.2Semi standard non polar33892256
Americanin B,1TMS,isomer #2C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O)C(O)=C14762.4Semi standard non polar33892256
Americanin B,1TMS,isomer #3C[Si](C)(C)OC1=CC(C2OC3=CC=C(C4OC5=CC(/C=C/C=O)=CC=C5OC4CO)C=C3OC2CO)=CC=C1O4785.5Semi standard non polar33892256
Americanin B,1TMS,isomer #4C[Si](C)(C)OC1=CC=C(C2OC3=CC=C(C4OC5=CC(/C=C/C=O)=CC=C5OC4CO)C=C3OC2CO)C=C1O4798.7Semi standard non polar33892256
Americanin B,2TMS,isomer #1C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO[Si](C)(C)C)=CC=C2OC1C1=CC=C(O)C(O)=C14564.5Semi standard non polar33892256
Americanin B,2TMS,isomer #2C[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O[Si](C)(C)C)C(O)=C3)C(CO)OC2=C14685.6Semi standard non polar33892256
Americanin B,2TMS,isomer #3C[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O)C(O[Si](C)(C)C)=C3)C(CO)OC2=C14671.6Semi standard non polar33892256
Americanin B,2TMS,isomer #4C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O[Si](C)(C)C)C(O)=C14692.0Semi standard non polar33892256
Americanin B,2TMS,isomer #5C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O)C(O[Si](C)(C)C)=C14679.1Semi standard non polar33892256
Americanin B,2TMS,isomer #6C[Si](C)(C)OC1=CC=C(C2OC3=CC=C(C4OC5=CC(/C=C/C=O)=CC=C5OC4CO)C=C3OC2CO)C=C1O[Si](C)(C)C4769.0Semi standard non polar33892256
Americanin B,3TMS,isomer #1C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO[Si](C)(C)C)=CC=C2OC1C1=CC=C(O[Si](C)(C)C)C(O)=C14496.2Semi standard non polar33892256
Americanin B,3TMS,isomer #2C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO[Si](C)(C)C)=CC=C2OC1C1=CC=C(O)C(O[Si](C)(C)C)=C14498.3Semi standard non polar33892256
Americanin B,3TMS,isomer #3C[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C3)C(CO)OC2=C14598.2Semi standard non polar33892256
Americanin B,3TMS,isomer #4C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C14610.6Semi standard non polar33892256
Americanin B,4TMS,isomer #1C[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO[Si](C)(C)C)=CC=C2OC1C1=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C14447.9Semi standard non polar33892256
Americanin B,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O)C(O)=C3)C(CO)OC2=C15028.6Semi standard non polar33892256
Americanin B,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O)C(O)=C15033.4Semi standard non polar33892256
Americanin B,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1=CC(C2OC3=CC=C(C4OC5=CC(/C=C/C=O)=CC=C5OC4CO)C=C3OC2CO)=CC=C1O5057.0Semi standard non polar33892256
Americanin B,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC1=CC=C(C2OC3=CC=C(C4OC5=CC(/C=C/C=O)=CC=C5OC4CO)C=C3OC2CO)C=C1O5069.1Semi standard non polar33892256
Americanin B,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO[Si](C)(C)C(C)(C)C)=CC=C2OC1C1=CC=C(O)C(O)=C15082.9Semi standard non polar33892256
Americanin B,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C3)C(CO)OC2=C15191.0Semi standard non polar33892256
Americanin B,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C3)C(CO)OC2=C15168.4Semi standard non polar33892256
Americanin B,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C15195.7Semi standard non polar33892256
Americanin B,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C15174.1Semi standard non polar33892256
Americanin B,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC1=CC=C(C2OC3=CC=C(C4OC5=CC(/C=C/C=O)=CC=C5OC4CO)C=C3OC2CO)C=C1O[Si](C)(C)C(C)(C)C5240.8Semi standard non polar33892256
Americanin B,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO[Si](C)(C)C(C)(C)C)=CC=C2OC1C1=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C15199.5Semi standard non polar33892256
Americanin B,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO[Si](C)(C)C(C)(C)C)=CC=C2OC1C1=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C15187.3Semi standard non polar33892256
Americanin B,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OCC1OC2=CC=C(/C=C/C=O)C=C2OC1C1=CC=C2OC(C3=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C3)C(CO)OC2=C15270.4Semi standard non polar33892256
Americanin B,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OCC1OC2=CC(C3OC4=CC(/C=C/C=O)=CC=C4OC3CO)=CC=C2OC1C1=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C15269.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Americanin B GC-MS (Non-derivatized) - 70eV, Positivesplash10-03di-0210900000-beca3e99c3d206d4bdd92017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Americanin B GC-MS (2 TMS) - 70eV, Positivesplash10-00di-6200049000-29d3e45ed245967481a42017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Americanin B GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 10V, Positive-QTOFsplash10-002f-0312900000-64475446763fa1c909de2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 20V, Positive-QTOFsplash10-002b-0210900000-745e78b9e00aea8746f32016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 40V, Positive-QTOFsplash10-000t-0910000000-359177e9fdd57650c3ea2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 10V, Negative-QTOFsplash10-0006-0000900000-a4492fbdd249415c899b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 20V, Negative-QTOFsplash10-0096-0402900000-dbd90a9592280f063f282016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 40V, Negative-QTOFsplash10-00kb-1920200000-21bd31af98517a0dbd562016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 10V, Negative-QTOFsplash10-0006-0001900000-98c0719f6022e9bd138a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 20V, Negative-QTOFsplash10-001i-0112900000-21cee2262248e02e822a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 40V, Negative-QTOFsplash10-0019-0322900000-ad6c912b7edd52020b982021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 10V, Positive-QTOFsplash10-0006-0003900000-5de809821d9f6bbc47082021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 20V, Positive-QTOFsplash10-0037-0002900000-c1264c0170936e1c941f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Americanin B 40V, Positive-QTOFsplash10-009f-0625900000-e560d70ff502cb64ad9f2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB016360
KNApSAcK IDC00055486
Chemspider ID30839456
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73352644
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1859971
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .