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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:42:40 UTC
Update Date2022-03-07 02:55:45 UTC
HMDB IDHMDB0038396
Secondary Accession Numbers
  • HMDB38396
Metabolite Identification
Common NameGancaonin D
DescriptionGancaonin D belongs to the class of organic compounds known as 3'-hydroxy,4'-methoxyisoflavonoids. These are isoflavonoids carrying a methoxy group attached to the C4' atom, as well as a hydroxyl group at the C3'-position of the isoflavonoid backbone. Thus, gancaonin D is considered to be a flavonoid. Gancaonin D has been detected, but not quantified in, herbs and spices. This could make gancaonin D a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on Gancaonin D.
Structure
Data?1563863190
Synonyms
ValueSource
3',5,7-Trihydroxy-4'-methoxy-8-(4-hydroxyprenyl)isoflavoneHMDB
Chemical FormulaC21H20O7
Average Molecular Weight384.3793
Monoisotopic Molecular Weight384.120902994
IUPAC Name5,7-dihydroxy-8-[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]-3-(3-hydroxy-4-methoxyphenyl)-4H-chromen-4-one
Traditional Namegancaonin D
CAS Registry Number124596-88-9
SMILES
COC1=C(O)C=C(C=C1)C1=COC2=C(C\C=C(/C)CO)C(O)=CC(O)=C2C1=O
InChI Identifier
InChI=1S/C21H20O7/c1-11(9-22)3-5-13-15(23)8-17(25)19-20(26)14(10-28-21(13)19)12-4-6-18(27-2)16(24)7-12/h3-4,6-8,10,22-25H,5,9H2,1-2H3/b11-3+
InChI KeyUCKSAYIMWMIZQJ-QDEBKDIKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 3'-hydroxy,4'-methoxyisoflavonoids. These are isoflavonoids carrying a methoxy group attached to the C4' atom, as well as a hydroxyl group at the C3'-position of the isoflavonoid backbone.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassO-methylated isoflavonoids
Direct Parent3'-hydroxy,4'-methoxyisoflavonoids
Alternative Parents
Substituents
  • 3'-hydroxy,4'-methoxyisoflavonoid
  • 4p-o-methylisoflavone
  • Isoflavone
  • Hydroxyisoflavonoid
  • Chromone
  • Methoxyphenol
  • 1-benzopyran
  • Benzopyran
  • Phenol ether
  • Phenoxy compound
  • Anisole
  • Methoxybenzene
  • 1-hydroxy-2-unsubstituted benzenoid
  • 1-hydroxy-4-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Pyranone
  • Benzenoid
  • Pyran
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Vinylogous acid
  • Ether
  • Organoheterocyclic compound
  • Oxacycle
  • Alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Primary alcohol
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Not AvailableNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point234 - 236 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility43.08 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.014 g/LALOGPS
logP3.02ALOGPS
logP3.37ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)6.42ChemAxon
pKa (Strongest Basic)-2.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area116.45 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity104.16 m³·mol⁻¹ChemAxon
Polarizability40.06 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+185.55130932474
DeepCCS[M-H]-183.19430932474
DeepCCS[M-2H]-216.88730932474
DeepCCS[M+Na]+192.11630932474
AllCCS[M+H]+192.332859911
AllCCS[M+H-H2O]+189.432859911
AllCCS[M+NH4]+195.032859911
AllCCS[M+Na]+195.832859911
AllCCS[M-H]-191.632859911
AllCCS[M+Na-2H]-191.632859911
AllCCS[M+HCOO]-191.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Gancaonin DCOC1=C(O)C=C(C=C1)C1=COC2=C(C\C=C(/C)CO)C(O)=CC(O)=C2C1=O5409.6Standard polar33892256
Gancaonin DCOC1=C(O)C=C(C=C1)C1=COC2=C(C\C=C(/C)CO)C(O)=CC(O)=C2C1=O3468.4Standard non polar33892256
Gancaonin DCOC1=C(O)C=C(C=C1)C1=COC2=C(C\C=C(/C)CO)C(O)=CC(O)=C2C1=O3741.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Gancaonin D,1TMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C3610.3Semi standard non polar33892256
Gancaonin D,1TMS,isomer #2COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O)=CC(O)=C3C2=O)C=C1O3647.6Semi standard non polar33892256
Gancaonin D,1TMS,isomer #3COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C)=CC(O)=C3C2=O)C=C1O3584.6Semi standard non polar33892256
Gancaonin D,1TMS,isomer #4COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O3601.3Semi standard non polar33892256
Gancaonin D,2TMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C3508.9Semi standard non polar33892256
Gancaonin D,2TMS,isomer #2COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C3482.2Semi standard non polar33892256
Gancaonin D,2TMS,isomer #3COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C3480.9Semi standard non polar33892256
Gancaonin D,2TMS,isomer #4COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O[Si](C)(C)C)=CC(O)=C3C2=O)C=C1O3457.1Semi standard non polar33892256
Gancaonin D,2TMS,isomer #5COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O3469.2Semi standard non polar33892256
Gancaonin D,2TMS,isomer #6COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O3462.7Semi standard non polar33892256
Gancaonin D,3TMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O[Si](C)(C)C)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C3404.8Semi standard non polar33892256
Gancaonin D,3TMS,isomer #2COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C3398.3Semi standard non polar33892256
Gancaonin D,3TMS,isomer #3COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C3408.5Semi standard non polar33892256
Gancaonin D,3TMS,isomer #4COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O3419.9Semi standard non polar33892256
Gancaonin D,4TMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C3398.2Semi standard non polar33892256
Gancaonin D,1TBDMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C3894.7Semi standard non polar33892256
Gancaonin D,1TBDMS,isomer #2COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O)=CC(O)=C3C2=O)C=C1O3955.1Semi standard non polar33892256
Gancaonin D,1TBDMS,isomer #3COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C(C)(C)C)=CC(O)=C3C2=O)C=C1O3873.3Semi standard non polar33892256
Gancaonin D,1TBDMS,isomer #4COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O3889.9Semi standard non polar33892256
Gancaonin D,2TBDMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C4077.2Semi standard non polar33892256
Gancaonin D,2TBDMS,isomer #2COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C(C)(C)C)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C4005.6Semi standard non polar33892256
Gancaonin D,2TBDMS,isomer #3COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C4014.9Semi standard non polar33892256
Gancaonin D,2TBDMS,isomer #4COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O)=C3C2=O)C=C1O4021.2Semi standard non polar33892256
Gancaonin D,2TBDMS,isomer #5COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O4028.1Semi standard non polar33892256
Gancaonin D,2TBDMS,isomer #6COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O3970.5Semi standard non polar33892256
Gancaonin D,3TBDMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C4139.1Semi standard non polar33892256
Gancaonin D,3TBDMS,isomer #2COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C4139.0Semi standard non polar33892256
Gancaonin D,3TBDMS,isomer #3COC1=CC=C(C2=COC3=C(C/C=C(\C)CO)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C4088.3Semi standard non polar33892256
Gancaonin D,3TBDMS,isomer #4COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O4168.4Semi standard non polar33892256
Gancaonin D,4TBDMS,isomer #1COC1=CC=C(C2=COC3=C(C/C=C(\C)CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C4273.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Gancaonin D GC-MS (Non-derivatized) - 70eV, Positivesplash10-1000-0109000000-01557bbfcb5ede7a193a2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gancaonin D GC-MS (4 TMS) - 70eV, Positivesplash10-0a4i-2000029000-edf5600893eb4b0f83c12017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gancaonin D GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 10V, Positive-QTOFsplash10-014r-1009000000-13b230f9e33437590b952016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 20V, Positive-QTOFsplash10-01b9-3109000000-72e5b4392b9c1d9222e52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 40V, Positive-QTOFsplash10-0fk9-9413000000-69760b6af5026efed87d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 10V, Negative-QTOFsplash10-001i-0009000000-04a6e490c0b990ae7b4e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 20V, Negative-QTOFsplash10-0fsi-0039000000-baad4d64fc2919ae80332016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 40V, Negative-QTOFsplash10-0l70-3449000000-97bb7a451842642598842016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 10V, Negative-QTOFsplash10-001i-0009000000-6bde363ee911627b14312021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 20V, Negative-QTOFsplash10-0f89-0009000000-e76819e5875942c59fd82021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 40V, Negative-QTOFsplash10-001r-0059000000-29a639ec2d2838d5cb8c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 10V, Positive-QTOFsplash10-000i-0009000000-477851511ea0facd835a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 20V, Positive-QTOFsplash10-03di-0019000000-d93598edf631cac4d9d62021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gancaonin D 40V, Positive-QTOFsplash10-0016-3096000000-6dc3d760c3a1ec6d125b2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017747
KNApSAcK IDC00009904
Chemspider ID4476336
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5317481
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1867961
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .