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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 00:11:51 UTC
Update Date2022-03-07 02:55:57 UTC
HMDB IDHMDB0038850
Secondary Accession Numbers
  • HMDB38850
Metabolite Identification
Common NameCycasin
DescriptionCycasin belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. Based on a literature review a significant number of articles have been published on Cycasin.
Structure
Data?1563863269
Synonyms
ValueSource
Methylazoxymethanol beta D glucosideMeSH
Methylazoxymethanol beta-D-glucosideMeSH
beta-D-Glucoside, methylazoxymethanolMeSH
Glucuronate, methylazoxymethanolMeSH
(Methyl-ONN-azoxy)methyl beta-D-glucopyranosideMeSH
Methylazoxymethanol glucuronateMeSH
(2-Hydroxy-2-methyl-2beta -D-glucosyloxyazoxymethaneHMDB
b-D-GlucosyloxyazoxymethaneHMDB
beta -D-Glucopyranoside, (methyl-ONN-azoxy)methylHMDB
Cycas revoluta glucosideHMDB
CykazineHMDB
Methylazoxymethanol beta -D-glucosideHMDB
Methylazoxymethanol glucosideHMDB
Methylazoxymethanolbeta -D-glucosideHMDB
CycasinMeSH
Chemical FormulaC8H16N2O7
Average Molecular Weight252.2218
Monoisotopic Molecular Weight252.095750876
IUPAC Name2-(hydroxymethyl)-6-{[(methyl-oxo-λ⁵-azanylidene)amino]methoxy}oxane-3,4,5-triol
Traditional Name2-(hydroxymethyl)-6-{[(methyl-oxo-λ⁵-azanylidene)amino]methoxy}oxane-3,4,5-triol
CAS Registry Number14901-08-7
SMILES
CN(=O)=NCOC1OC(CO)C(O)C(O)C1O
InChI Identifier
InChI=1S/C8H16N2O7/c1-10(15)9-3-16-8-7(14)6(13)5(12)4(2-11)17-8/h4-8,11-14H,2-3H2,1H3/b10-9-
InChI KeyYHLRMABUJXBLCK-KTKRTIGZSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentO-glycosyl compounds
Alternative Parents
Substituents
  • Hexose monosaccharide
  • O-glycosyl compound
  • Monosaccharide
  • Oxane
  • Azoxy compound
  • Secondary alcohol
  • Acetal
  • Oxacycle
  • Polyol
  • Organoheterocyclic compound
  • Alcohol
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Primary alcohol
  • Organic nitrogen compound
  • Organic zwitterion
  • Organic salt
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point154 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility56.6 g/LALOGPS
logP-2.6ALOGPS
logP-3.2ChemAxon
logS-0.65ALOGPS
pKa (Strongest Acidic)12.21ChemAxon
pKa (Strongest Basic)4.16ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area140.49 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity52.05 m³·mol⁻¹ChemAxon
Polarizability23.39 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+153.76330932474
DeepCCS[M-H]-151.40530932474
DeepCCS[M-2H]-185.71530932474
DeepCCS[M+Na]+160.3430932474
AllCCS[M+H]+154.332859911
AllCCS[M+H-H2O]+150.732859911
AllCCS[M+NH4]+157.732859911
AllCCS[M+Na]+158.732859911
AllCCS[M-H]-152.032859911
AllCCS[M+Na-2H]-152.032859911
AllCCS[M+HCOO]-152.132859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 20229.6226 minutes33406817
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid269.1 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid767.8 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid250.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid51.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid171.1 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid56.4 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid275.7 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid262.6 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)659.8 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid574.6 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid60.4 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid846.4 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid198.1 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid222.1 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate565.6 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA345.3 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water319.8 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
CycasinCN(=O)=NCOC1OC(CO)C(O)C(O)C1O3440.7Standard polar33892256
CycasinCN(=O)=NCOC1OC(CO)C(O)C(O)C1O2345.0Standard non polar33892256
CycasinCN(=O)=NCOC1OC(CO)C(O)C(O)C1O2127.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Cycasin,1TMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O)C(O)C1O2189.2Semi standard non polar33892256
Cycasin,1TMS,isomer #2C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C)C(O)C1O2168.2Semi standard non polar33892256
Cycasin,1TMS,isomer #3C[N+]([O-])=NCOC1OC(CO)C(O)C(O[Si](C)(C)C)C1O2147.2Semi standard non polar33892256
Cycasin,1TMS,isomer #4C[N+]([O-])=NCOC1OC(CO)C(O)C(O)C1O[Si](C)(C)C2152.3Semi standard non polar33892256
Cycasin,2TMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O2201.6Semi standard non polar33892256
Cycasin,2TMS,isomer #2C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O2202.5Semi standard non polar33892256
Cycasin,2TMS,isomer #3C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O)C(O)C1O[Si](C)(C)C2191.1Semi standard non polar33892256
Cycasin,2TMS,isomer #4C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O2170.5Semi standard non polar33892256
Cycasin,2TMS,isomer #5C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C2171.6Semi standard non polar33892256
Cycasin,2TMS,isomer #6C[N+]([O-])=NCOC1OC(CO)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C2167.6Semi standard non polar33892256
Cycasin,3TMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O2231.4Semi standard non polar33892256
Cycasin,3TMS,isomer #2C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C2257.0Semi standard non polar33892256
Cycasin,3TMS,isomer #3C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C2223.3Semi standard non polar33892256
Cycasin,3TMS,isomer #4C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C2216.6Semi standard non polar33892256
Cycasin,4TMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C2276.2Semi standard non polar33892256
Cycasin,1TBDMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O2412.4Semi standard non polar33892256
Cycasin,1TBDMS,isomer #2C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O2397.0Semi standard non polar33892256
Cycasin,1TBDMS,isomer #3C[N+]([O-])=NCOC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O2385.9Semi standard non polar33892256
Cycasin,1TBDMS,isomer #4C[N+]([O-])=NCOC1OC(CO)C(O)C(O)C1O[Si](C)(C)C(C)(C)C2395.2Semi standard non polar33892256
Cycasin,2TBDMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O2640.1Semi standard non polar33892256
Cycasin,2TBDMS,isomer #2C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O2642.9Semi standard non polar33892256
Cycasin,2TBDMS,isomer #3C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O[Si](C)(C)C(C)(C)C2637.3Semi standard non polar33892256
Cycasin,2TBDMS,isomer #4C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O2631.1Semi standard non polar33892256
Cycasin,2TBDMS,isomer #5C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C2629.3Semi standard non polar33892256
Cycasin,2TBDMS,isomer #6C[N+]([O-])=NCOC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C2631.0Semi standard non polar33892256
Cycasin,3TBDMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O2878.9Semi standard non polar33892256
Cycasin,3TBDMS,isomer #2C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C2892.9Semi standard non polar33892256
Cycasin,3TBDMS,isomer #3C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C2867.9Semi standard non polar33892256
Cycasin,3TBDMS,isomer #4C[N+]([O-])=NCOC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C2853.5Semi standard non polar33892256
Cycasin,4TBDMS,isomer #1C[N+]([O-])=NCOC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C3098.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Cycasin GC-MS (Non-derivatized) - 70eV, Positivesplash10-0h5r-9850000000-3ae79e36d7b7a3e090ce2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Cycasin GC-MS (4 TMS) - 70eV, Positivesplash10-004i-9000760000-b350e12e80c5a64f29242017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Cycasin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 10V, Positive-QTOFsplash10-000i-3090000000-19f2d0d91e8917e296042016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 20V, Positive-QTOFsplash10-004u-9140000000-9389db4aa9cad9ab70e52016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 40V, Positive-QTOFsplash10-0006-9220000000-890302a816c15fbbc59c2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 10V, Negative-QTOFsplash10-0f79-3290000000-693da4f26853aa2678dd2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 20V, Negative-QTOFsplash10-054x-9440000000-c030d7e270a9e19238452016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 40V, Negative-QTOFsplash10-0006-9300000000-f0a64372d5343f3c10932016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 10V, Positive-QTOFsplash10-0udj-4290000000-dab40db05cddba32104d2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 20V, Positive-QTOFsplash10-006w-9210000000-045abc302fac26225e782021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 40V, Positive-QTOFsplash10-0a4i-9000000000-040fc93954dfd45042022021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 10V, Negative-QTOFsplash10-0udi-2390000000-1cc076ed764d4f3915352021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 20V, Negative-QTOFsplash10-0006-9320000000-eb05cde49a57379db8412021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cycasin 40V, Negative-QTOFsplash10-0006-9100000000-08add1f5d16d8c2891422021-09-25Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB018287
KNApSAcK IDNot Available
Chemspider ID21211069
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkAllolactose
METLIN IDNot Available
PubChem Compound9572792
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1379151
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .