| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2012-09-12 01:58:41 UTC |
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| Update Date | 2022-03-07 02:56:35 UTC |
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| HMDB ID | HMDB0040436 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | endo-1,4-beta-Xylanase |
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| Description | endo-1,4-beta-Xylanase belongs to the class of organic compounds known as phenylmethylamines. Phenylmethylamines are compounds containing a phenylmethtylamine moiety, which consists of a phenyl group substituted by an methanamine. Based on a literature review very few articles have been published on endo-1,4-beta-Xylanase. |
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| Structure | CC[N+](CC)(CCCNC1=CC(=O)C(NCCC[N+](CC)(CC)CC2=CC=CC=C2)=CC1=O)CC1=CC=CC=C1 InChI=1S/C34H48N4O2/c1-5-37(6-2,27-29-17-11-9-12-18-29)23-15-21-35-31-25-34(40)32(26-33(31)39)36-22-16-24-38(7-3,8-4)28-30-19-13-10-14-20-30/h9-14,17-20,25-26H,5-8,15-16,21-24,27-28H2,1-4H3/p+2 |
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| Synonyms | | Value | Source |
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| endo-1,4-b-Xylanase | Generator | | endo-1,4-Β-xylanase | Generator | | 1,4-b-D-Xylan xylanohydrolase | HMDB | | 311-09-1 (Di-chloride) | HMDB | | Benzoquinonium | HMDB | | E.C. 3.2.1.8 | HMDB | | Endoxylanase | HMDB | | Pentosanase | HMDB | | Xylanase | HMDB | | (2,5-Benzoquinonylenebisiminotrimethylene)bis(benzyldiethylammonium) | MeSH | | Mytolon chloride | MeSH | | Benzoquinonium dichloride | MeSH |
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| Chemical Formula | C34H50N4O2 |
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| Average Molecular Weight | 546.7864 |
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| Monoisotopic Molecular Weight | 546.393376864 |
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| IUPAC Name | benzyl({3-[(4-{[3-(benzyldiethylazaniumyl)propyl]amino}-3,6-dioxocyclohexa-1,4-dien-1-yl)amino]propyl})diethylazanium |
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| Traditional Name | benzyl({3-[(4-{[3-(benzyldiethylammonio)propyl]amino}-3,6-dioxocyclohexa-1,4-dien-1-yl)amino]propyl})diethylazanium |
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| CAS Registry Number | 9025-57-4 |
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| SMILES | CC[N+](CC)(CCCNC1=CC(=O)C(NCCC[N+](CC)(CC)CC2=CC=CC=C2)=CC1=O)CC1=CC=CC=C1 |
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| InChI Identifier | InChI=1S/C34H48N4O2/c1-5-37(6-2,27-29-17-11-9-12-18-29)23-15-21-35-31-25-34(40)32(26-33(31)39)36-22-16-24-38(7-3,8-4)28-30-19-13-10-14-20-30/h9-14,17-20,25-26H,5-8,15-16,21-24,27-28H2,1-4H3/p+2 |
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| InChI Key | YERABYSOHUZTPQ-UHFFFAOYSA-P |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as phenylmethylamines. Phenylmethylamines are compounds containing a phenylmethtylamine moiety, which consists of a phenyl group substituted by an methanamine. |
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| Kingdom | Organic compounds |
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| Super Class | Benzenoids |
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| Class | Benzene and substituted derivatives |
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| Sub Class | Phenylmethylamines |
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| Direct Parent | Phenylmethylamines |
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| Alternative Parents | |
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| Substituents | - Benzylamine
- P-benzoquinone
- Phenylmethylamine
- Quinone
- Aralkylamine
- Tetraalkylammonium salt
- Vinylogous amide
- Quaternary ammonium salt
- Ketone
- Cyclic ketone
- Secondary aliphatic amine
- Enamine
- Secondary amine
- Hydrocarbon derivative
- Organic nitrogen compound
- Organic oxide
- Organopnictogen compound
- Organic oxygen compound
- Organooxygen compound
- Organonitrogen compound
- Organic salt
- Amine
- Carbonyl group
- Organic cation
- Aromatic homomonocyclic compound
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| Molecular Framework | Aromatic homomonocyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 3.9 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 13.6246 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.52 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 1618.1 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 151.0 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 244.2 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 160.6 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 102.9 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 659.1 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 478.3 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 629.8 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 1122.7 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 593.6 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1788.3 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 378.2 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 418.4 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 220.0 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 179.7 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 8.6 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| endo-1,4-beta-Xylanase,1TMS,isomer #1 | CC[N+](CC)(CCCNC1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C)=CC1=O)CC1=CC=CC=C1 | 4750.4 | Semi standard non polar | 33892256 | | endo-1,4-beta-Xylanase,1TMS,isomer #1 | CC[N+](CC)(CCCNC1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C)=CC1=O)CC1=CC=CC=C1 | 4374.4 | Standard non polar | 33892256 | | endo-1,4-beta-Xylanase,2TMS,isomer #1 | CC[N+](CC)(CCCN(C1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C)=CC1=O)[Si](C)(C)C)CC1=CC=CC=C1 | 4523.3 | Semi standard non polar | 33892256 | | endo-1,4-beta-Xylanase,2TMS,isomer #1 | CC[N+](CC)(CCCN(C1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C)=CC1=O)[Si](C)(C)C)CC1=CC=CC=C1 | 4138.1 | Standard non polar | 33892256 | | endo-1,4-beta-Xylanase,1TBDMS,isomer #1 | CC[N+](CC)(CCCNC1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C(C)(C)C)=CC1=O)CC1=CC=CC=C1 | 4994.2 | Semi standard non polar | 33892256 | | endo-1,4-beta-Xylanase,1TBDMS,isomer #1 | CC[N+](CC)(CCCNC1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C(C)(C)C)=CC1=O)CC1=CC=CC=C1 | 4537.4 | Standard non polar | 33892256 | | endo-1,4-beta-Xylanase,2TBDMS,isomer #1 | CC[N+](CC)(CCCN(C1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C(C)(C)C)=CC1=O)[Si](C)(C)C(C)(C)C)CC1=CC=CC=C1 | 4923.0 | Semi standard non polar | 33892256 | | endo-1,4-beta-Xylanase,2TBDMS,isomer #1 | CC[N+](CC)(CCCN(C1=CC(=O)C(N(CCC[N+](CC)(CC)CC2=CC=CC=C2)[Si](C)(C)C(C)(C)C)=CC1=O)[Si](C)(C)C(C)(C)C)CC1=CC=CC=C1 | 4408.9 | Standard non polar | 33892256 |
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| NMR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum |
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