Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:07:51 UTC
Update Date2022-03-07 02:56:38 UTC
HMDB IDHMDB0040568
Secondary Accession Numbers
  • HMDB40568
Metabolite Identification
Common Name[6]-Gingerdiol 3,5-diacetate
Description[6]-Gingerdiol 3,5-diacetate belongs to the class of organic compounds known as fatty alcohol esters. These are ester derivatives of a fatty alcohol. Based on a literature review a small amount of articles have been published on [6]-Gingerdiol 3,5-diacetate.
Structure
Data?1563863563
Synonyms
ValueSource
[6]-Gingerdiol 3,5-diacetic acidGenerator
3-(Acetyloxy)-1-(4-hydroxy-3-methoxyphenyl)decan-5-yl acetic acidHMDB
Chemical FormulaC21H32O6
Average Molecular Weight380.4752
Monoisotopic Molecular Weight380.219888756
IUPAC Name3-(acetyloxy)-1-(4-hydroxy-3-methoxyphenyl)decan-5-yl acetate
Traditional Name3-(acetyloxy)-1-(4-hydroxy-3-methoxyphenyl)decan-5-yl acetate
CAS Registry Number143615-75-2
SMILES
CCCCCC(CC(CCC1=CC(OC)=C(O)C=C1)OC(C)=O)OC(C)=O
InChI Identifier
InChI=1S/C21H32O6/c1-5-6-7-8-18(26-15(2)22)14-19(27-16(3)23)11-9-17-10-12-20(24)21(13-17)25-4/h10,12-13,18-19,24H,5-9,11,14H2,1-4H3
InChI KeyPXBFKEHWQRAQQD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty alcohol esters. These are ester derivatives of a fatty alcohol.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty alcohol esters
Direct ParentFatty alcohol esters
Alternative Parents
Substituents
  • Fatty alcohol ester
  • Methoxyphenol
  • Anisole
  • Phenoxy compound
  • Phenol ether
  • Methoxybenzene
  • Phenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Dicarboxylic acid or derivatives
  • Monocyclic benzene moiety
  • Carboxylic acid ester
  • Ether
  • Carboxylic acid derivative
  • Organooxygen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.14 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.011 g/LALOGPS
logP4.51ALOGPS
logP4.06ChemAxon
logS-4.5ALOGPS
pKa (Strongest Acidic)9.95ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area82.06 ŲChemAxon
Rotatable Bond Count14ChemAxon
Refractivity102.55 m³·mol⁻¹ChemAxon
Polarizability42.42 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+193.30731661259
DarkChem[M-H]-191.50631661259
DeepCCS[M+H]+193.45730932474
DeepCCS[M-H]-190.64330932474
DeepCCS[M-2H]-225.87930932474
DeepCCS[M+Na]+202.16930932474
AllCCS[M+H]+198.132859911
AllCCS[M+H-H2O]+195.432859911
AllCCS[M+NH4]+200.532859911
AllCCS[M+Na]+201.232859911
AllCCS[M-H]-196.332859911
AllCCS[M+Na-2H]-197.732859911
AllCCS[M+HCOO]-199.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
[6]-Gingerdiol 3,5-diacetateCCCCCC(CC(CCC1=CC(OC)=C(O)C=C1)OC(C)=O)OC(C)=O4263.8Standard polar33892256
[6]-Gingerdiol 3,5-diacetateCCCCCC(CC(CCC1=CC(OC)=C(O)C=C1)OC(C)=O)OC(C)=O2598.4Standard non polar33892256
[6]-Gingerdiol 3,5-diacetateCCCCCC(CC(CCC1=CC(OC)=C(O)C=C1)OC(C)=O)OC(C)=O2536.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
[6]-Gingerdiol 3,5-diacetate,1TMS,isomer #1CCCCCC(CC(CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)OC(C)=O)OC(C)=O2594.8Semi standard non polar33892256
[6]-Gingerdiol 3,5-diacetate,1TBDMS,isomer #1CCCCCC(CC(CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)OC(C)=O)OC(C)=O2818.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - [6]-Gingerdiol 3,5-diacetate GC-MS (Non-derivatized) - 70eV, Positivesplash10-007c-9625000000-a0514f23bf0b371d87362017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - [6]-Gingerdiol 3,5-diacetate GC-MS (1 TMS) - 70eV, Positivesplash10-0006-9025100000-7ea39d921dcd40f676b62017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - [6]-Gingerdiol 3,5-diacetate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - [6]-Gingerdiol 3,5-diacetate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 10V, Positive-QTOFsplash10-008i-0119000000-1dd40347a206e572fb952015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 20V, Positive-QTOFsplash10-00dr-5549000000-de453f0e58cac528dfb22015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 40V, Positive-QTOFsplash10-052o-9520000000-014161e5468e84afb0c92015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 10V, Negative-QTOFsplash10-004r-1009000000-62cb1c7c4cfb52826c0a2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 20V, Negative-QTOFsplash10-05br-3129000000-c47c400224e6a7b9429a2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 40V, Negative-QTOFsplash10-0abc-9278000000-d4352b2c16126d91ac932015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 10V, Negative-QTOFsplash10-056r-9067000000-de6e94d4760cf58ac0b92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 20V, Negative-QTOFsplash10-0a4i-9000000000-c01bbbf5bed889264ddb2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 40V, Negative-QTOFsplash10-0a4l-9000000000-1ea235ac9696948d739f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 10V, Positive-QTOFsplash10-0759-2189000000-cf23b5039c7612088ec42021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 20V, Positive-QTOFsplash10-0bu0-8689000000-6d6160aa0c0a3d0397af2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [6]-Gingerdiol 3,5-diacetate 40V, Positive-QTOFsplash10-0006-8920000000-f179c0971aa92885b34f2021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020346
KNApSAcK IDNot Available
Chemspider ID4476431
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5317587
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1884471
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.