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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-12 02:09:00 UTC

Update Date

2023-02-21 17:28:23 UTC

HMDB ID

HMDB0040589

Secondary Accession Numbers

HMDB40589

Metabolite Identification

Common Name

3-Acetyl-2,5-dimethylthiophene

Description

3-Acetyl-2,5-dimethylthiophene belongs to the class of organic compounds known as aryl alkyl ketones. These are ketones have the generic structure RC(=O)R', where R = aryl group and R'=alkyl group. 3-Acetyl-2,5-dimethylthiophene is a burnt, meaty, and roasted tasting compound. Based on a literature review very few articles have been published on 3-Acetyl-2,5-dimethylthiophene.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

View in JSmol View Stereo Labels

Synonyms

Value	Source
1-(2,5-Dimethyl-3-thienyl)-ethanone	HMDB
1-(2,5-Dimethyl-3-thienyl)ethanone	HMDB
1-(2,5-Dimethyl-3-thienyl)ethanone, 9ci	HMDB
2,5-Dimethyl-3-acetylthiophene	HMDB
2,5-Dimethyl-3-thienyl methyl ketone	HMDB
2,5-Dimethyl-3-thienyl methyl ketone, 8ci	HMDB
2,5-Dimethylthiophen-3-yl methyl ketone	HMDB
3-Acetyl-2,5-dimethyl thiophene	HMDB
Dimethylthienylcetone	HMDB
FEMA 3527	HMDB
Ketone, 2,5-dimethyl-3-thienyl methyl	HMDB

Chemical Formula

C₈H₁₀OS

Average Molecular Weight

154.229

Monoisotopic Molecular Weight

154.045235632

IUPAC Name

1-(2,5-dimethylthiophen-3-yl)ethan-1-one

Traditional Name

1-(2,5-dimethylthiophen-3-yl)ethanone

CAS Registry Number

2530-10-1

SMILES

CC(=O)C1=C(C)SC(C)=C1

InChI Identifier

InChI=1S/C8H10OS/c1-5-4-8(6(2)9)7(3)10-5/h4H,1-3H3

InChI Key

PUSJAEJRDNPYKM-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aryl alkyl ketones. These are ketones have the generic structure RC(=O)R', where R = aryl group and R'=alkyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Aryl alkyl ketones

Alternative Parents

Substituents

Aryl alkyl ketone
2,3,5-trisubstituted thiophene
Heteroaromatic compound
Thiophene
Organoheterocyclic compound
Organic oxide
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Cellular substructure

Extracellular (HMDB: HMDB0040589)
Cytoplasm (HMDB: HMDB0040589)

Source

Exogenous

Exogenous (HMDB: HMDB0040589)

Food

Food (HMDB: HMDB0040589)

Process

Not Available

Role

Industrial application

Food and nutrition

Food additive

Flavoring agent

Flavoring Agent (HMDB: HMDB0040589)

Biological role

Nutrient (HMDB: HMDB0040589)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	223.00 to 225.00 °C. @ 760.00 mm Hg	The Good Scents Company Information System
Water Solubility	447.6 mg/L @ 25 °C (est)	The Good Scents Company Information System
LogP	0.476 (est)	The Good Scents Company Information System

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.32 g/L	ALOGPS
logP	2.12	ALOGPS
logP	2.6	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	15.8	ChemAxon
pKa (Strongest Basic)	-7.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	17.07 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	43.68 m³·mol⁻¹	ChemAxon
Polarizability	16.91 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	133.153	31661259
DarkChem	[M-H]-	130.919	31661259
DeepCCS	[M+H]+	149.47	30932474
DeepCCS	[M-H]-	145.643	30932474
DeepCCS	[M-2H]-	183.096	30932474
DeepCCS	[M+Na]+	158.635	30932474
AllCCS	[M+H]+	128.3	32859911
AllCCS	[M+H-H2O]+	123.9	32859911
AllCCS	[M+NH4]+	132.4	32859911
AllCCS	[M+Na]+	133.6	32859911
AllCCS	[M-H]-	130.9	32859911
AllCCS	[M+Na-2H]-	132.6	32859911
AllCCS	[M+HCOO]-	134.6	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	4.62 minutes	32390414
Predicted by Siyang on May 30, 2022	13.0682 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.21 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	1564.1 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	466.6 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	167.5 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	288.8 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	90.7 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	298.8 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	292.4 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	104.9 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	991.2 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	362.2 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1084.4 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	362.9 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	225.0 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	437.2 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	379.7 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	113.6 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
3-Acetyl-2,5-dimethylthiophene	CC(=O)C1=C(C)SC(C)=C1	1624.4	Standard polar	33892256
3-Acetyl-2,5-dimethylthiophene	CC(=O)C1=C(C)SC(C)=C1	1238.9	Standard non polar	33892256
3-Acetyl-2,5-dimethylthiophene	CC(=O)C1=C(C)SC(C)=C1	1287.9	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 3-Acetyl-2,5-dimethylthiophene GC-MS (Non-derivatized) - 70eV, Positive	splash10-000i-4900000000-740b275a1ad36ec73330	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 3-Acetyl-2,5-dimethylthiophene GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 10V, Positive-QTOF	splash10-0a4i-0900000000-861b03a44a337ee8d040	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 20V, Positive-QTOF	splash10-0a4i-4900000000-e56232582bae2afbf3c8	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 40V, Positive-QTOF	splash10-0fg2-9500000000-3cdcf1e22c937d61b282	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 10V, Negative-QTOF	splash10-0udi-0900000000-7c4124250acef2de32ad	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 20V, Negative-QTOF	splash10-0w29-3900000000-b25a5ecaf2b7b20275c9	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 40V, Negative-QTOF	splash10-0ce9-9200000000-5d71626311f8c21a19c5	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 10V, Positive-QTOF	splash10-0a4u-3900000000-8d81288ece3600ad3c49	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 20V, Positive-QTOF	splash10-000f-9800000000-94c1b2b014ca39ba0798	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 40V, Positive-QTOF	splash10-0006-9100000000-58ac81709b994d83841f	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 10V, Negative-QTOF	splash10-0w29-0900000000-57dd2d7093c4429d99cb	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 20V, Negative-QTOF	splash10-03di-2900000000-d7c841157aa7a0bf4b97	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Acetyl-2,5-dimethylthiophene 40V, Negative-QTOF	splash10-08fr-5900000000-bc11b47dbe690021a7f5	2021-09-22	Wishart Lab	View Spectrum

IR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted IR Spectrum	IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)	2023-02-04	FELIX lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB020372

KNApSAcK ID

Not Available

Chemspider ID

453745

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

520191

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

rw1036701

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Showing metabocard for 3-Acetyl-2,5-dimethylthiophene (HMDB0040589)

MOL for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

3D MOL for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

3D SDF for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

3D-SDF for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

PDB for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

3D PDB for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

SMILES for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

INCHI for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

Structure for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

3D Structure for HMDB0040589 (3-Acetyl-2,5-dimethylthiophene)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra

IR Spectra