Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 03:10:51 UTC
Update Date2023-02-21 17:28:45 UTC
HMDB IDHMDB0041490
Secondary Accession Numbers
  • HMDB41490
Metabolite Identification
Common NameDihydrogeranylacetone
DescriptionDihydrogeranylacetone belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle. Based on a literature review a small amount of articles have been published on Dihydrogeranylacetone.
Structure
Data?1677000525
Synonyms
ValueSource
3,4,5,6-TetrahydropseudoiononeHMDB
6,10-Dimethyl-9-undecen-2-oneHMDB
6,10-Dimethyl-undecen-2-oneHMDB
6,10-Dimethylundec-9-en-2-oneHMDB
6,10-Dimethylundecen-2-oneHMDB
CitronellylacetoneHMDB
FEMA 3059HMDB
tetrahydro-pseudo-IononeHMDB
TetrahydropseudoiononeHMDB
Chemical FormulaC13H24O
Average Molecular Weight196.3291
Monoisotopic Molecular Weight196.18271539
IUPAC Name6,10-dimethylundec-9-en-2-one
Traditional Name6,10-dimethylundec-9-en-2-one
CAS Registry Number4433-36-7
SMILES
CC(CCCC(C)=O)CCC=C(C)C
InChI Identifier
InChI=1S/C13H24O/c1-11(2)7-5-8-12(3)9-6-10-13(4)14/h7,12H,5-6,8-10H2,1-4H3
InChI KeyLGVYUZVANMHKHV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentAcyclic monoterpenoids
Alternative Parents
Substituents
  • Acyclic monoterpenoid
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point234.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility7.32 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP4.397 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.019 g/LALOGPS
logP4.56ALOGPS
logP4.09ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)19.64ChemAxon
pKa (Strongest Basic)-7.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area17.07 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity62.98 m³·mol⁻¹ChemAxon
Polarizability25.45 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+150.18331661259
DarkChem[M-H]-147.67431661259
DeepCCS[M+H]+149.33230932474
DeepCCS[M-H]-146.89930932474
DeepCCS[M-2H]-182.39630932474
DeepCCS[M+Na]+157.54230932474
AllCCS[M+H]+152.432859911
AllCCS[M+H-H2O]+148.732859911
AllCCS[M+NH4]+155.832859911
AllCCS[M+Na]+156.832859911
AllCCS[M-H]-154.032859911
AllCCS[M+Na-2H]-155.432859911
AllCCS[M+HCOO]-157.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
DihydrogeranylacetoneCC(CCCC(C)=O)CCC=C(C)C1801.4Standard polar33892256
DihydrogeranylacetoneCC(CCCC(C)=O)CCC=C(C)C1412.1Standard non polar33892256
DihydrogeranylacetoneCC(CCCC(C)=O)CCC=C(C)C1411.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Dihydrogeranylacetone,1TMS,isomer #1CC(C)=CCCC(C)CCC=C(C)O[Si](C)(C)C1594.6Semi standard non polar33892256
Dihydrogeranylacetone,1TMS,isomer #1CC(C)=CCCC(C)CCC=C(C)O[Si](C)(C)C1573.1Standard non polar33892256
Dihydrogeranylacetone,1TMS,isomer #2C=C(CCCC(C)CCC=C(C)C)O[Si](C)(C)C1566.5Semi standard non polar33892256
Dihydrogeranylacetone,1TMS,isomer #2C=C(CCCC(C)CCC=C(C)C)O[Si](C)(C)C1569.5Standard non polar33892256
Dihydrogeranylacetone,1TBDMS,isomer #1CC(C)=CCCC(C)CCC=C(C)O[Si](C)(C)C(C)(C)C1832.5Semi standard non polar33892256
Dihydrogeranylacetone,1TBDMS,isomer #1CC(C)=CCCC(C)CCC=C(C)O[Si](C)(C)C(C)(C)C1771.2Standard non polar33892256
Dihydrogeranylacetone,1TBDMS,isomer #2C=C(CCCC(C)CCC=C(C)C)O[Si](C)(C)C(C)(C)C1804.7Semi standard non polar33892256
Dihydrogeranylacetone,1TBDMS,isomer #2C=C(CCCC(C)CCC=C(C)C)O[Si](C)(C)C(C)(C)C1756.8Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Dihydrogeranylacetone GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9400000000-42413f0d3a04d743572c2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dihydrogeranylacetone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 10V, Positive-QTOFsplash10-002b-0900000000-9c4e8041f38405f120bf2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 20V, Positive-QTOFsplash10-00os-5900000000-382f120a95665cff426c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 40V, Positive-QTOFsplash10-0ldi-9100000000-be9c18dc85c1efb850532016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 10V, Negative-QTOFsplash10-0002-0900000000-04fcd2f7c28def68782d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 20V, Negative-QTOFsplash10-0002-2900000000-3a2cb500835353ef3dea2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 40V, Negative-QTOFsplash10-0a4i-9600000000-672d97deed647125b2d62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 10V, Negative-QTOFsplash10-0002-0900000000-8b84f4ec9505b7f297272021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 20V, Negative-QTOFsplash10-0a4i-9700000000-53072aed9771039354372021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 40V, Negative-QTOFsplash10-0a4i-9600000000-60d9cdb34b686ef802c02021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 10V, Positive-QTOFsplash10-05qa-9800000000-cdf6cedfc5d3fcbef8342021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 20V, Positive-QTOFsplash10-05o0-9100000000-2a1842a47750f3be07502021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dihydrogeranylacetone 40V, Positive-QTOFsplash10-05nf-9000000000-25cff6eafa6504923f1c2021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021460
KNApSAcK IDNot Available
Chemspider ID92676
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound102604
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1385091
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.