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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2009-04-06 16:20:08 UTC

Update Date

2022-03-07 02:51:21 UTC

HMDB ID

HMDB0012155

Secondary Accession Numbers

HMDB12155

Metabolite Identification

Common Name

3-Hydroxypimelyl-CoA

Description

3-Hydroxypimelyl-CoA is an intermediate in benzoyl-CoA degradation II (anaerobic) and can be generated from the hydrolysis of 6-oxocyclohex-1-ene-1-carboxyl-CoA. It is also a substrate for the 3-hydroxypimeloyl-CoA dehydrogenase (EC 1.1.1.259 ). Biodegradation of aromatic compounds is a common process in anoxic environments. The many natural and synthetic aromatic compounds found in the environment are usually degraded by anaerobic microorganisms into only few central intermediates, prior to ring cleavage. Benzoyl-CoA is the most important of these intermediates since a large number of compounds, including chloro-, nitro-, and aminobenzoates, aromatic hydrocarbons, and phenolic compounds, are initially converted to benzoyl-CoA prior to ring reduction and cleavage.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 02241203472D          

 59 61  0  0  1  0            999 V2000
   24.3575  -11.5588    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   23.9099  -12.6626    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.5866  -11.3305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.5866  -10.5311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.6673  -13.4049    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.8394  -13.4049    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   24.3575  -10.2743    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   24.8285  -10.9023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2390  -12.1773    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.6110  -12.6483    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   22.9015  -10.1171    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8873  -11.7158    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   22.3683  -14.0472    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.2734  -10.5026    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.8831  -12.4057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2734  -11.3019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.5405  -11.6634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1383  -14.0758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.9015   -9.3036    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.6547  -14.4612    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   20.9409  -14.0472    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.6547  -15.2891    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2550  -13.7475    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.8267  -12.0774    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   20.0988  -11.6634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.8267  -12.9052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.4271  -11.3637    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.3850  -12.0774    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   18.6714  -11.6634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.3850  -12.9052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.9854  -11.3637    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8206  -12.0774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5485  -11.6634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2480  -12.0774    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.9616  -11.6634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6754  -12.0774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3891  -11.6634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1029  -12.0774    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.8308  -11.6634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5446  -12.0774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2440  -11.6634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9576  -12.0774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6578  -11.1036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8623  -11.1298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5446  -12.9052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.8308  -10.8498    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.9616  -10.8498    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.1069  -11.6634    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    9.3915  -12.0746    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6778  -11.6605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3899  -12.8996    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9624  -12.0717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2488  -11.6577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5334  -12.0689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9608  -12.8967    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8197  -11.6548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1044  -12.0660    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3907  -11.6520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1027  -12.8910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  3  1  1  0  0  0  0
  8  1  1  0  0  0  0
  5  2  1  0  0  0  0
  9  2  1  0  0  0  0
  4  3  2  0  0  0  0
 12  3  1  0  0  0  0
 11  4  1  0  0  0  0
  7  4  1  0  0  0  0
  6  5  1  0  0  0  0
  5 18  1  6  0  0  0
  6 13  1  6  0  0  0
 10  6  1  0  0  0  0
  8  7  2  0  0  0  0
 10  9  1  0  0  0  0
 10 15  1  1  0  0  0
 19 11  1  0  0  0  0
 14 11  2  0  0  0  0
 16 12  2  0  0  0  0
 20 13  1  0  0  0  0
 16 14  1  0  0  0  0
 17 15  1  0  0  0  0
 24 17  1  0  0  0  0
 21 20  1  0  0  0  0
 22 20  2  0  0  0  0
 23 20  1  0  0  0  0
 25 24  1  0  0  0  0
 26 24  2  0  0  0  0
 27 24  1  0  0  0  0
 28 25  1  0  0  0  0
 29 28  1  0  0  0  0
 30 28  2  0  0  0  0
 31 28  1  0  0  0  0
 42 29  1  0  0  0  0
 33 32  1  0  0  0  0
 48 32  1  0  0  0  0
 34 33  1  0  0  0  0
 35 34  1  0  0  0  0
 36 35  1  0  0  0  0
 47 35  2  0  0  0  0
 37 36  1  0  0  0  0
 38 37  1  0  0  0  0
 39 38  1  0  0  0  0
 40 39  1  0  0  0  0
 46 39  2  0  0  0  0
 41 40  1  0  0  0  0
 45 40  1  0  0  0  0
 42 41  1  0  0  0  0
 43 41  1  0  0  0  0
 44 41  1  0  0  0  0
 49 48  1  0  0  0  0
 50 49  1  0  0  0  0
 51 49  2  0  0  0  0
 52 50  1  0  0  0  0
 53 52  1  0  0  0  0
 54 53  1  0  0  0  0
 55 52  1  0  0  0  0
 56 54  1  0  0  0  0
 57 56  1  0  0  0  0
 58 57  1  0  0  0  0
 59 57  2  0  0  0  0
M  END

HMDB0012155
     RDKit          3D
3-Hydroxypimelyl-CoA
105107  0  0  0  0  0  0  0  0999 V2000
   -0.7385   -2.1084   -0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4471   -0.7301    0.0897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1085   -0.7834    1.5377 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8692   -0.0440    0.0461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6536   -0.8192    0.8646 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2364   -0.2269    0.9291 P   0  0  0  0  0  5  0  0  0  0  0  0
   -4.5459    0.6936   -0.2140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4647    0.5729    2.4029 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2653   -1.5453    0.8437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1405   -1.5088   -0.6052 P   0  0  0  0  0  5  0  0  0  0  0  0
   -5.4675   -0.6764   -1.6707 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2921   -3.0961   -1.1397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6662   -0.8233   -0.2326 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0686   -1.4369    0.9540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4169   -0.9368    1.4327 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.4377    0.4003    1.6881 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4583    1.0117    1.0125 C   0  0  1  0  0  0  0  0  0  0  0  0
  -10.2215    2.3989    0.7276 N   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5289    3.3921    1.6122 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1974    4.5756    1.0878 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6812    4.3095   -0.1295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1892    5.2000   -1.0752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1937    6.5776   -0.7926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7136    4.7026   -2.2465 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7442    3.3714   -2.4289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2196    2.4999   -1.5170 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6968    2.9367   -0.3549 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5890    0.1685   -0.2353 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.7888    0.3829   -0.9019 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4707   -1.2154    0.3721 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.6232   -1.6013    1.0080 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1822   -3.1044    0.4715 P   0  0  0  0  0  5  0  0  0  0  0  0
  -11.6688   -3.4236   -0.8972 O   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8691   -3.2064    0.5832 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5474   -4.2820    1.5316 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4450    0.0851   -0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0772    0.3884   -2.0362 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7823   -0.4914   -0.9531 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4119   -0.0723   -2.0093 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3974   -1.4291   -0.1132 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7623   -1.8657   -0.4523 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6750   -0.6900   -0.2655 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1037   -1.0708   -0.6597 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1989   -1.9790   -1.5524 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1127   -0.4191   -0.0228 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1470    0.2279    0.6091 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    1.0317   -0.2722 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8527    0.1831   -1.5687 S   0  0  0  0  0  0  0  0  0  0  0  0
   11.0745   -0.9718   -1.1346 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6720   -1.5044   -2.1374 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.5259   -1.4282    0.1737 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7974   -0.7844    0.6977 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5713    0.5984    0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.8915   -0.9234   -0.3529 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2055   -0.3824    0.0782 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2643    1.0556    0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8838    1.9727   -0.6319 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5762    1.5357   -1.7535 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.8742    3.3375   -0.3849 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0496   -2.8737   -0.0081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7674   -2.4240   -0.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6083   -2.0787   -1.5794 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7900   -0.1577    1.7840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9156   -0.3104    2.1916 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0068   -1.8193    1.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6930    0.9784    0.3976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2512   -0.1029   -0.9979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6280    0.5111    2.9444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2203   -3.1555   -2.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2917   -1.3277    1.7255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1547   -2.5435    0.7452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6492   -1.4862    2.3777 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3838    0.8577    1.5998 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9704    3.2728    2.5861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3653    7.0267   -0.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0285    7.1451   -1.0155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3450    3.0258   -3.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7341    0.2716   -0.9373 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5759    0.9535   -1.6990 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1094   -1.9576   -0.3775 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2261   -2.5511    1.2614 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2235   -4.5788    2.1768 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5958    1.0798   -0.2431 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5621    0.1614   -2.7250 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9585   -1.8318    0.7184 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0819   -2.6529    0.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7275   -2.2145   -1.4937 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4027    0.1477   -0.9135 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7148   -0.3913    0.8113 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0200   -1.1420   -0.7631 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7402    0.9846    1.4008 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7402   -0.5067    1.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4178    1.8828   -0.6967 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7949    1.5778    0.4047 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7829   -1.3638    0.9862 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7156   -2.5436    0.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0901   -1.1780    1.6807 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2055    0.9065   -0.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5063   -0.4323   -1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9974   -2.0050   -0.5621 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9237   -0.5472   -0.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.5599   -1.0319    0.9333 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.6851    1.2863    1.3905 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.3536    1.2533    0.7368 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0265    3.8559   -0.2831 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  6  9  1  0
  9 10  1  0
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 55101  1  0
 55102  1  0
 56103  1  0
 56104  1  0
 59105  1  0
M  END


  Mrv0541 02241203472D          

 59 61  0  0  1  0            999 V2000
   24.3575  -11.5588    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   23.9099  -12.6626    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.5866  -11.3305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.5866  -10.5311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.6673  -13.4049    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.8394  -13.4049    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   24.3575  -10.2743    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   24.8285  -10.9023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2390  -12.1773    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.6110  -12.6483    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   22.9015  -10.1171    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8873  -11.7158    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   22.3683  -14.0472    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   14.3891  -11.6634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1029  -12.0774    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
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   16.5446  -12.0774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2440  -11.6634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9576  -12.0774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6578  -11.1036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.3915  -12.0746    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2  1  1  1  0  0  0
  3  1  1  0  0  0  0
  8  1  1  0  0  0  0
  5  2  1  0  0  0  0
  9  2  1  0  0  0  0
  4  3  2  0  0  0  0
 12  3  1  0  0  0  0
 11  4  1  0  0  0  0
  7  4  1  0  0  0  0
  6  5  1  0  0  0  0
  5 18  1  6  0  0  0
  6 13  1  6  0  0  0
 10  6  1  0  0  0  0
  8  7  2  0  0  0  0
 10  9  1  0  0  0  0
 10 15  1  1  0  0  0
 19 11  1  0  0  0  0
 14 11  2  0  0  0  0
 16 12  2  0  0  0  0
 20 13  1  0  0  0  0
 16 14  1  0  0  0  0
 17 15  1  0  0  0  0
 24 17  1  0  0  0  0
 21 20  1  0  0  0  0
 22 20  2  0  0  0  0
 23 20  1  0  0  0  0
 25 24  1  0  0  0  0
 26 24  2  0  0  0  0
 27 24  1  0  0  0  0
 28 25  1  0  0  0  0
 29 28  1  0  0  0  0
 30 28  2  0  0  0  0
 31 28  1  0  0  0  0
 42 29  1  0  0  0  0
 33 32  1  0  0  0  0
 48 32  1  0  0  0  0
 34 33  1  0  0  0  0
 35 34  1  0  0  0  0
 36 35  1  0  0  0  0
 47 35  2  0  0  0  0
 37 36  1  0  0  0  0
 38 37  1  0  0  0  0
 39 38  1  0  0  0  0
 40 39  1  0  0  0  0
 46 39  2  0  0  0  0
 41 40  1  0  0  0  0
 45 40  1  0  0  0  0
 42 41  1  0  0  0  0
 43 41  1  0  0  0  0
 44 41  1  0  0  0  0
 49 48  1  0  0  0  0
 50 49  1  0  0  0  0
 51 49  2  0  0  0  0
 52 50  1  0  0  0  0
 53 52  1  0  0  0  0
 54 53  1  0  0  0  0
 55 52  1  0  0  0  0
 56 54  1  0  0  0  0
 57 56  1  0  0  0  0
 58 57  1  0  0  0  0
 59 57  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0012155

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N)C(O)C(=O)NCCC(=O)NCCSC(=O)CC(O)CCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C28H46N7O20P3S/c1-28(2,23(42)26(43)31-7-6-17(37)30-8-9-59-19(40)10-15(36)4-3-5-18(38)39)12-52-58(49,50)55-57(47,48)51-11-16-22(54-56(44,45)46)21(41)27(53-16)35-14-34-20-24(29)32-13-33-25(20)35/h13-16,21-23,27,36,41-42H,3-12H2,1-2H3,(H,30,37)(H,31,43)(H,38,39)(H,47,48)(H,49,50)(H2,29,32,33)(H2,44,45,46)/t15?,16-,21-,22-,23?,27-/m1/s1

> <INCHI_KEY>
VGEBXBQECGWCRH-PUEFWPISSA-N

> <FORMULA>
C28H46N7O20P3S

> <MOLECULAR_WEIGHT>
925.686

> <EXACT_MASS>
925.173117173

> <JCHEM_ACCEPTOR_COUNT>
20

> <JCHEM_AVERAGE_POLARIZABILITY>
82.50087021089521

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
11

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
7-{[2-(3-{3-[({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-2-hydroxy-3-methylbutanamido}propanamido)ethyl]sulfanyl}-5-hydroxy-7-oxoheptanoic acid

> <ALOGPS_LOGP>
-0.61

> <JCHEM_LOGP>
-7.049892710646803

> <ALOGPS_LOGS>
-2.43

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-5

> <JCHEM_PKA>
1.8312313715049662

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8250141403194555

> <JCHEM_PKA_STRONGEST_BASIC>
4.996577908172831

> <JCHEM_POLAR_SURFACE_AREA>
421.1599999999999

> <JCHEM_REFRACTIVITY>
198.41980000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.47e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-({2-[3-(3-{[({[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]methyl}-2-hydroxy-3-methylbutanamido)propanamido]ethyl}sulfanyl)-5-hydroxy-7-oxoheptanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0012155
     RDKit          3D
3-Hydroxypimelyl-CoA
105107  0  0  0  0  0  0  0  0999 V2000
   -0.7385   -2.1084   -0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4471   -0.7301    0.0897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1085   -0.7834    1.5377 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8692   -0.0440    0.0461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6536   -0.8192    0.8646 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2364   -0.2269    0.9291 P   0  0  0  0  0  5  0  0  0  0  0  0
   -4.5459    0.6936   -0.2140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4647    0.5729    2.4029 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2653   -1.5453    0.8437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1405   -1.5088   -0.6052 P   0  0  0  0  0  5  0  0  0  0  0  0
   -5.4675   -0.6764   -1.6707 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2921   -3.0961   -1.1397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6662   -0.8233   -0.2326 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0686   -1.4369    0.9540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4169   -0.9368    1.4327 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.4377    0.4003    1.6881 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4583    1.0117    1.0125 C   0  0  1  0  0  0  0  0  0  0  0  0
  -10.2215    2.3989    0.7276 N   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5289    3.3921    1.6122 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1974    4.5756    1.0878 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6812    4.3095   -0.1295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1892    5.2000   -1.0752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1937    6.5776   -0.7926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7136    4.7026   -2.2465 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7442    3.3714   -2.4289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2196    2.4999   -1.5170 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6968    2.9367   -0.3549 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5890    0.1685   -0.2353 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.7888    0.3829   -0.9019 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4707   -1.2154    0.3721 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.6232   -1.6013    1.0080 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1822   -3.1044    0.4715 P   0  0  0  0  0  5  0  0  0  0  0  0
  -11.6688   -3.4236   -0.8972 O   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8691   -3.2064    0.5832 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5474   -4.2820    1.5316 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4450    0.0851   -0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0772    0.3884   -2.0362 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7823   -0.4914   -0.9531 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4119   -0.0723   -2.0093 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3974   -1.4291   -0.1132 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7623   -1.8657   -0.4523 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6750   -0.6900   -0.2655 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1037   -1.0708   -0.6597 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1989   -1.9790   -1.5524 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1127   -0.4191   -0.0228 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1470    0.2279    0.6091 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    1.0317   -0.2722 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8527    0.1831   -1.5687 S   0  0  0  0  0  0  0  0  0  0  0  0
   11.0745   -0.9718   -1.1346 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6720   -1.5044   -2.1374 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.5259   -1.4282    0.1737 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7974   -0.7844    0.6977 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5713    0.5984    0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.8915   -0.9234   -0.3529 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2055   -0.3824    0.0782 C   0  0  0  0  0  0  0  0  0  0  0  0
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   14.8838    1.9727   -0.6319 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5762    1.5357   -1.7535 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.8742    3.3375   -0.3849 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7674   -2.4240   -0.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
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   11.7156   -2.5436    0.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0901   -1.1780    1.6807 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2055    0.9065   -0.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5063   -0.4323   -1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
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   14.0265    3.8559   -0.2831 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  N   UNK     0      45.467 -21.576   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      44.632 -23.637   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      44.028 -21.150   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      44.028 -19.658   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      44.179 -25.022   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      42.633 -25.022   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0      45.467 -19.179   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      46.347 -20.351   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      43.379 -22.731   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      42.207 -23.610   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      42.749 -18.885   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      42.723 -21.870   0.000  0.00  0.00           N+0
HETATM   13  O   UNK     0      41.754 -26.221   0.000  0.00  0.00           O+0
HETATM   14  N   UNK     0      41.577 -19.605   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0      40.848 -23.157   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      41.577 -21.097   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      40.209 -21.772   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      45.058 -26.275   0.000  0.00  0.00           O+0
HETATM   19  N   UNK     0      42.749 -17.367   0.000  0.00  0.00           N+0
HETATM   20  P   UNK     0      40.422 -26.994   0.000  0.00  0.00           P+0
HETATM   21  O   UNK     0      39.090 -26.221   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      40.422 -28.540   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      39.676 -25.662   0.000  0.00  0.00           O+0
HETATM   24  P   UNK     0      38.877 -22.544   0.000  0.00  0.00           P+0
HETATM   25  O   UNK     0      37.518 -21.772   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      38.877 -24.090   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      38.131 -21.212   0.000  0.00  0.00           O+0
HETATM   28  P   UNK     0      36.185 -22.544   0.000  0.00  0.00           P+0
HETATM   29  O   UNK     0      34.853 -21.772   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      36.185 -24.090   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      35.439 -21.212   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      20.198 -22.544   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      21.557 -21.772   0.000  0.00  0.00           C+0
HETATM   34  N   UNK     0      22.863 -22.544   0.000  0.00  0.00           N+0
HETATM   35  C   UNK     0      24.195 -21.772   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      25.527 -22.544   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      26.860 -21.772   0.000  0.00  0.00           C+0
HETATM   38  N   UNK     0      28.192 -22.544   0.000  0.00  0.00           N+0
HETATM   39  C   UNK     0      29.551 -21.772   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      30.883 -22.544   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      32.189 -21.772   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      33.521 -22.544   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      32.961 -20.727   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      31.476 -20.776   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      30.883 -24.090   0.000  0.00  0.00           O+0
HETATM   46  O   UNK     0      29.551 -20.253   0.000  0.00  0.00           O+0
HETATM   47  O   UNK     0      24.195 -20.253   0.000  0.00  0.00           O+0
HETATM   48  S   UNK     0      18.866 -21.772   0.000  0.00  0.00           S+0
HETATM   49  C   UNK     0      17.531 -22.539   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      16.198 -21.766   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      17.528 -24.079   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      14.863 -22.534   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      13.531 -21.761   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      12.196 -22.529   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0      14.860 -24.074   0.000  0.00  0.00           O+0
HETATM   56  C   UNK     0      10.863 -21.756   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0       9.528 -22.523   0.000  0.00  0.00           C+0
HETATM   58  O   UNK     0       8.196 -21.750   0.000  0.00  0.00           O+0
HETATM   59  O   UNK     0       9.525 -24.063   0.000  0.00  0.00           O+0
CONECT    1    2    3    8                                                  
CONECT    2    1    5    9                                                  
CONECT    3    1    4   12                                                  
CONECT    4    3   11    7                                                  
CONECT    5    2    6   18                                                  
CONECT    6    5   13   10                                                  
CONECT    7    4    8                                                       
CONECT    8    1    7                                                       
CONECT    9    2   10                                                       
CONECT   10    6    9   15                                                  
CONECT   11    4   19   14                                                  
CONECT   12    3   16                                                       
CONECT   13    6   20                                                       
CONECT   14   11   16                                                       
CONECT   15   10   17                                                       
CONECT   16   12   14                                                       
CONECT   17   15   24                                                       
CONECT   18    5                                                            
CONECT   19   11                                                            
CONECT   20   13   21   22   23                                             
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   20                                                            
CONECT   24   17   25   26   27                                             
CONECT   25   24   28                                                       
CONECT   26   24                                                            
CONECT   27   24                                                            
CONECT   28   25   29   30   31                                             
CONECT   29   28   42                                                       
CONECT   30   28                                                            
CONECT   31   28                                                            
CONECT   32   33   48                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36   47                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   46                                                  
CONECT   40   39   41   45                                                  
CONECT   41   40   42   43   44                                             
CONECT   42   29   41                                                       
CONECT   43   41                                                            
CONECT   44   41                                                            
CONECT   45   40                                                            
CONECT   46   39                                                            
CONECT   47   35                                                            
CONECT   48   32   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49   52                                                       
CONECT   51   49                                                            
CONECT   52   50   53   55                                                  
CONECT   53   52   54                                                       
CONECT   54   53   56                                                       
CONECT   55   52                                                            
CONECT   56   54   57                                                       
CONECT   57   56   58   59                                                  
CONECT   58   57                                                            
CONECT   59   57                                                            
MASTER        0    0    0    0    0    0    0    0   59    0  122    0
END

COMPND    HMDB0012155
HETATM    1  C1  UNL     1      -0.738  -2.108  -0.459  1.00  0.00           C  
HETATM    2  C2  UNL     1      -0.447  -0.730   0.090  1.00  0.00           C  
HETATM    3  C3  UNL     1      -0.109  -0.783   1.538  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.869  -0.044   0.046  1.00  0.00           C  
HETATM    5  O1  UNL     1      -2.654  -0.819   0.865  1.00  0.00           O  
HETATM    6  P1  UNL     1      -4.236  -0.227   0.929  1.00  0.00           P  
HETATM    7  O2  UNL     1      -4.546   0.694  -0.214  1.00  0.00           O  
HETATM    8  O3  UNL     1      -4.465   0.573   2.403  1.00  0.00           O  
HETATM    9  O4  UNL     1      -5.265  -1.545   0.844  1.00  0.00           O  
HETATM   10  P2  UNL     1      -6.141  -1.509  -0.605  1.00  0.00           P  
HETATM   11  O5  UNL     1      -5.468  -0.676  -1.671  1.00  0.00           O  
HETATM   12  O6  UNL     1      -6.292  -3.096  -1.140  1.00  0.00           O  
HETATM   13  O7  UNL     1      -7.666  -0.823  -0.233  1.00  0.00           O  
HETATM   14  C5  UNL     1      -8.069  -1.437   0.954  1.00  0.00           C  
HETATM   15  C6  UNL     1      -9.417  -0.937   1.433  1.00  0.00           C  
HETATM   16  O8  UNL     1      -9.438   0.400   1.688  1.00  0.00           O  
HETATM   17  C7  UNL     1     -10.458   1.012   1.012  1.00  0.00           C  
HETATM   18  N1  UNL     1     -10.221   2.399   0.728  1.00  0.00           N  
HETATM   19  C8  UNL     1     -10.529   3.392   1.612  1.00  0.00           C  
HETATM   20  N2  UNL     1     -10.197   4.576   1.088  1.00  0.00           N  
HETATM   21  C9  UNL     1      -9.681   4.309  -0.130  1.00  0.00           C  
HETATM   22  C10 UNL     1      -9.189   5.200  -1.075  1.00  0.00           C  
HETATM   23  N3  UNL     1      -9.194   6.578  -0.793  1.00  0.00           N  
HETATM   24  N4  UNL     1      -8.714   4.703  -2.246  1.00  0.00           N  
HETATM   25  C11 UNL     1      -8.744   3.371  -2.429  1.00  0.00           C  
HETATM   26  N5  UNL     1      -9.220   2.500  -1.517  1.00  0.00           N  
HETATM   27  C12 UNL     1      -9.697   2.937  -0.355  1.00  0.00           C  
HETATM   28  C13 UNL     1     -10.589   0.169  -0.235  1.00  0.00           C  
HETATM   29  O9  UNL     1     -11.789   0.383  -0.902  1.00  0.00           O  
HETATM   30  C14 UNL     1     -10.471  -1.215   0.372  1.00  0.00           C  
HETATM   31  O10 UNL     1     -11.623  -1.601   1.008  1.00  0.00           O  
HETATM   32  P3  UNL     1     -12.182  -3.104   0.471  1.00  0.00           P  
HETATM   33  O11 UNL     1     -11.669  -3.424  -0.897  1.00  0.00           O  
HETATM   34  O12 UNL     1     -13.869  -3.206   0.583  1.00  0.00           O  
HETATM   35  O13 UNL     1     -11.547  -4.282   1.532  1.00  0.00           O  
HETATM   36  C15 UNL     1       0.445   0.085  -0.760  1.00  0.00           C  
HETATM   37  O14 UNL     1      -0.077   0.388  -2.036  1.00  0.00           O  
HETATM   38  C16 UNL     1       1.782  -0.491  -0.953  1.00  0.00           C  
HETATM   39  O15 UNL     1       2.412  -0.072  -2.009  1.00  0.00           O  
HETATM   40  N6  UNL     1       2.397  -1.429  -0.113  1.00  0.00           N  
HETATM   41  C17 UNL     1       3.762  -1.866  -0.452  1.00  0.00           C  
HETATM   42  C18 UNL     1       4.675  -0.690  -0.265  1.00  0.00           C  
HETATM   43  C19 UNL     1       6.104  -1.071  -0.660  1.00  0.00           C  
HETATM   44  O16 UNL     1       6.199  -1.979  -1.552  1.00  0.00           O  
HETATM   45  N7  UNL     1       7.113  -0.419  -0.023  1.00  0.00           N  
HETATM   46  C20 UNL     1       8.147   0.228   0.609  1.00  0.00           C  
HETATM   47  C21 UNL     1       9.045   1.032  -0.272  1.00  0.00           C  
HETATM   48  S1  UNL     1       9.853   0.183  -1.569  1.00  0.00           S  
HETATM   49  C22 UNL     1      11.074  -0.972  -1.135  1.00  0.00           C  
HETATM   50  O17 UNL     1      11.672  -1.504  -2.137  1.00  0.00           O  
HETATM   51  C23 UNL     1      11.526  -1.428   0.174  1.00  0.00           C  
HETATM   52  C24 UNL     1      12.797  -0.784   0.698  1.00  0.00           C  
HETATM   53  O18 UNL     1      12.571   0.598   0.820  1.00  0.00           O  
HETATM   54  C25 UNL     1      13.891  -0.923  -0.353  1.00  0.00           C  
HETATM   55  C26 UNL     1      15.206  -0.382   0.078  1.00  0.00           C  
HETATM   56  C27 UNL     1      15.264   1.056   0.459  1.00  0.00           C  
HETATM   57  C28 UNL     1      14.884   1.973  -0.632  1.00  0.00           C  
HETATM   58  O19 UNL     1      14.576   1.536  -1.753  1.00  0.00           O  
HETATM   59  O20 UNL     1      14.874   3.337  -0.385  1.00  0.00           O  
HETATM   60  H1  UNL     1      -0.050  -2.874  -0.008  1.00  0.00           H  
HETATM   61  H2  UNL     1      -1.767  -2.424  -0.279  1.00  0.00           H  
HETATM   62  H3  UNL     1      -0.608  -2.079  -1.579  1.00  0.00           H  
HETATM   63  H4  UNL     1       0.790  -0.158   1.784  1.00  0.00           H  
HETATM   64  H5  UNL     1      -0.916  -0.310   2.192  1.00  0.00           H  
HETATM   65  H6  UNL     1       0.007  -1.819   1.941  1.00  0.00           H  
HETATM   66  H7  UNL     1      -1.693   0.978   0.398  1.00  0.00           H  
HETATM   67  H8  UNL     1      -2.251  -0.103  -0.998  1.00  0.00           H  
HETATM   68  H9  UNL     1      -3.628   0.511   2.944  1.00  0.00           H  
HETATM   69  H10 UNL     1      -6.220  -3.155  -2.148  1.00  0.00           H  
HETATM   70  H11 UNL     1      -7.292  -1.328   1.726  1.00  0.00           H  
HETATM   71  H12 UNL     1      -8.155  -2.543   0.745  1.00  0.00           H  
HETATM   72  H13 UNL     1      -9.649  -1.486   2.378  1.00  0.00           H  
HETATM   73  H14 UNL     1     -11.384   0.858   1.600  1.00  0.00           H  
HETATM   74  H15 UNL     1     -10.970   3.273   2.586  1.00  0.00           H  
HETATM   75  H16 UNL     1      -8.365   7.027  -0.372  1.00  0.00           H  
HETATM   76  H17 UNL     1     -10.029   7.145  -1.015  1.00  0.00           H  
HETATM   77  H18 UNL     1      -8.345   3.026  -3.395  1.00  0.00           H  
HETATM   78  H19 UNL     1      -9.734   0.272  -0.937  1.00  0.00           H  
HETATM   79  H20 UNL     1     -11.576   0.954  -1.699  1.00  0.00           H  
HETATM   80  H21 UNL     1     -10.109  -1.958  -0.377  1.00  0.00           H  
HETATM   81  H22 UNL     1     -14.226  -2.551   1.261  1.00  0.00           H  
HETATM   82  H23 UNL     1     -12.223  -4.579   2.177  1.00  0.00           H  
HETATM   83  H24 UNL     1       0.596   1.080  -0.243  1.00  0.00           H  
HETATM   84  H25 UNL     1       0.562   0.161  -2.725  1.00  0.00           H  
HETATM   85  H26 UNL     1       1.958  -1.832   0.718  1.00  0.00           H  
HETATM   86  H27 UNL     1       4.082  -2.653   0.267  1.00  0.00           H  
HETATM   87  H28 UNL     1       3.728  -2.214  -1.494  1.00  0.00           H  
HETATM   88  H29 UNL     1       4.403   0.148  -0.913  1.00  0.00           H  
HETATM   89  H30 UNL     1       4.715  -0.391   0.811  1.00  0.00           H  
HETATM   90  H31 UNL     1       8.020  -1.142  -0.763  1.00  0.00           H  
HETATM   91  H32 UNL     1       7.740   0.985   1.401  1.00  0.00           H  
HETATM   92  H33 UNL     1       8.740  -0.507   1.238  1.00  0.00           H  
HETATM   93  H34 UNL     1       8.418   1.883  -0.697  1.00  0.00           H  
HETATM   94  H35 UNL     1       9.795   1.578   0.405  1.00  0.00           H  
HETATM   95  H36 UNL     1      10.783  -1.364   0.986  1.00  0.00           H  
HETATM   96  H37 UNL     1      11.716  -2.544   0.068  1.00  0.00           H  
HETATM   97  H38 UNL     1      13.090  -1.178   1.681  1.00  0.00           H  
HETATM   98  H39 UNL     1      12.205   0.907  -0.057  1.00  0.00           H  
HETATM   99  H40 UNL     1      13.506  -0.432  -1.270  1.00  0.00           H  
HETATM  100  H41 UNL     1      13.997  -2.005  -0.562  1.00  0.00           H  
HETATM  101  H42 UNL     1      15.924  -0.547  -0.772  1.00  0.00           H  
HETATM  102  H43 UNL     1      15.560  -1.032   0.933  1.00  0.00           H  
HETATM  103  H44 UNL     1      14.685   1.286   1.390  1.00  0.00           H  
HETATM  104  H45 UNL     1      16.354   1.253   0.737  1.00  0.00           H  
HETATM  105  H46 UNL     1      14.026   3.856  -0.283  1.00  0.00           H  
CONECT    1    2   60   61   62
CONECT    2    3    4   36
CONECT    3   63   64   65
CONECT    4    5   66   67
CONECT    5    6
CONECT    6    7    7    8    9
CONECT    8   68
CONECT    9   10
CONECT   10   11   11   12   13
CONECT   12   69
CONECT   13   14
CONECT   14   15   70   71
CONECT   15   16   30   72
CONECT   16   17
CONECT   17   18   28   73
CONECT   18   19   27
CONECT   19   20   20   74
CONECT   20   21
CONECT   21   22   22   27
CONECT   22   23   24
CONECT   23   75   76
CONECT   24   25   25
CONECT   25   26   77
CONECT   26   27   27
CONECT   28   29   30   78
CONECT   29   79
CONECT   30   31   80
CONECT   31   32
CONECT   32   33   33   34   35
CONECT   34   81
CONECT   35   82
CONECT   36   37   38   83
CONECT   37   84
CONECT   38   39   39   40
CONECT   40   41   85
CONECT   41   42   86   87
CONECT   42   43   88   89
CONECT   43   44   44   45
CONECT   45   46   90
CONECT   46   47   91   92
CONECT   47   48   93   94
CONECT   48   49
CONECT   49   50   50   51
CONECT   51   52   95   96
CONECT   52   53   54   97
CONECT   53   98
CONECT   54   55   99  100
CONECT   55   56  101  102
CONECT   56   57  103  104
CONECT   57   58   58   59
CONECT   59  105
END

HMDB0012155
     RDKit          3D
3-Hydroxypimelyl-CoA
105107  0  0  0  0  0  0  0  0999 V2000
   -0.7385   -2.1084   -0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4471   -0.7301    0.0897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1085   -0.7834    1.5377 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8692   -0.0440    0.0461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6536   -0.8192    0.8646 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2364   -0.2269    0.9291 P   0  0  0  0  0  5  0  0  0  0  0  0
   -4.5459    0.6936   -0.2140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4647    0.5729    2.4029 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2653   -1.5453    0.8437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1405   -1.5088   -0.6052 P   0  0  0  0  0  5  0  0  0  0  0  0
   -5.4675   -0.6764   -1.6707 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2921   -3.0961   -1.1397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6662   -0.8233   -0.2326 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0686   -1.4369    0.9540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4169   -0.9368    1.4327 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.4377    0.4003    1.6881 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4583    1.0117    1.0125 C   0  0  1  0  0  0  0  0  0  0  0  0
  -10.2215    2.3989    0.7276 N   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5289    3.3921    1.6122 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1974    4.5756    1.0878 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6812    4.3095   -0.1295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1892    5.2000   -1.0752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1937    6.5776   -0.7926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7136    4.7026   -2.2465 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7442    3.3714   -2.4289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2196    2.4999   -1.5170 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6968    2.9367   -0.3549 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5890    0.1685   -0.2353 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.7888    0.3829   -0.9019 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4707   -1.2154    0.3721 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.6232   -1.6013    1.0080 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1822   -3.1044    0.4715 P   0  0  0  0  0  5  0  0  0  0  0  0
  -11.6688   -3.4236   -0.8972 O   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8691   -3.2064    0.5832 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5474   -4.2820    1.5316 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4450    0.0851   -0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0772    0.3884   -2.0362 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7823   -0.4914   -0.9531 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4119   -0.0723   -2.0093 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3974   -1.4291   -0.1132 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7623   -1.8657   -0.4523 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6750   -0.6900   -0.2655 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1037   -1.0708   -0.6597 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1989   -1.9790   -1.5524 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1127   -0.4191   -0.0228 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1470    0.2279    0.6091 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    1.0317   -0.2722 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8527    0.1831   -1.5687 S   0  0  0  0  0  0  0  0  0  0  0  0
   11.0745   -0.9718   -1.1346 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6720   -1.5044   -2.1374 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.5259   -1.4282    0.1737 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7974   -0.7844    0.6977 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5713    0.5984    0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.8915   -0.9234   -0.3529 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2055   -0.3824    0.0782 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2643    1.0556    0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8838    1.9727   -0.6319 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5762    1.5357   -1.7535 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.8742    3.3375   -0.3849 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0496   -2.8737   -0.0081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7674   -2.4240   -0.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6083   -2.0787   -1.5794 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7900   -0.1577    1.7840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9156   -0.3104    2.1916 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0068   -1.8193    1.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6930    0.9784    0.3976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2512   -0.1029   -0.9979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6280    0.5111    2.9444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2203   -3.1555   -2.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2917   -1.3277    1.7255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1547   -2.5435    0.7452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6492   -1.4862    2.3777 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3838    0.8577    1.5998 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9704    3.2728    2.5861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3653    7.0267   -0.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0285    7.1451   -1.0155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3450    3.0258   -3.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7341    0.2716   -0.9373 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5759    0.9535   -1.6990 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1094   -1.9576   -0.3775 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2261   -2.5511    1.2614 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2235   -4.5788    2.1768 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5958    1.0798   -0.2431 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5621    0.1614   -2.7250 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9585   -1.8318    0.7184 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0819   -2.6529    0.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7275   -2.2145   -1.4937 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4027    0.1477   -0.9135 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7148   -0.3913    0.8113 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0200   -1.1420   -0.7631 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7402    0.9846    1.4008 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7402   -0.5067    1.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4178    1.8828   -0.6967 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7949    1.5778    0.4047 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7829   -1.3638    0.9862 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7156   -2.5436    0.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0901   -1.1780    1.6807 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2055    0.9065   -0.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5063   -0.4323   -1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9974   -2.0050   -0.5621 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9237   -0.5472   -0.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.5599   -1.0319    0.9333 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.6851    1.2863    1.3905 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.3536    1.2533    0.7368 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0265    3.8559   -0.2831 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 10 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
 17 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  2  0
 32 34  1  0
 32 35  1  0
  2 36  1  0
 36 37  1  0
 36 38  1  0
 38 39  2  0
 38 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 43 44  2  0
 43 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  2  0
 49 51  1  0
 51 52  1  0
 52 53  1  0
 52 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  1  0
 57 58  2  0
 57 59  1  0
 30 15  1  0
 27 18  1  0
 27 21  1  0
  1 60  1  0
  1 61  1  0
  1 62  1  0
  3 63  1  0
  3 64  1  0
  3 65  1  0
  4 66  1  0
  4 67  1  0
  8 68  1  0
 12 69  1  0
 14 70  1  0
 14 71  1  0
 15 72  1  1
 17 73  1  1
 19 74  1  0
 23 75  1  0
 23 76  1  0
 25 77  1  0
 28 78  1  6
 29 79  1  0
 30 80  1  6
 34 81  1  0
 35 82  1  0
 36 83  1  0
 37 84  1  0
 40 85  1  0
 41 86  1  0
 41 87  1  0
 42 88  1  0
 42 89  1  0
 45 90  1  0
 46 91  1  0
 46 92  1  0
 47 93  1  0
 47 94  1  0
 51 95  1  0
 51 96  1  0
 52 97  1  0
 53 98  1  0
 54 99  1  0
 54100  1  0
 55101  1  0
 55102  1  0
 56103  1  0
 56104  1  0
 59105  1  0
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Value	Source
3-Hydroxypimeloyl-CoA	HMDB
3-Hydroxypimeloyl-coenzyme A	HMDB
3-Hydroxypimelyl-coenzyme A	HMDB
7-({2-[(3-{[4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-1,2-dihydroxy-3,3-dimethylbutylidene]amino}-1-hydroxypropylidene)amino]ethyl}sulfanyl)-5-hydroxy-7-oxoheptanoate	Generator, HMDB
7-({2-[(3-{[4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-1,2-dihydroxy-3,3-dimethylbutylidene]amino}-1-hydroxypropylidene)amino]ethyl}sulphanyl)-5-hydroxy-7-oxoheptanoate	Generator, HMDB
7-({2-[(3-{[4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-1,2-dihydroxy-3,3-dimethylbutylidene]amino}-1-hydroxypropylidene)amino]ethyl}sulphanyl)-5-hydroxy-7-oxoheptanoic acid	Generator, HMDB

Chemical Formula

C₂₈H₄₆N₇O₂₀P₃S

Average Molecular Weight

925.686

Monoisotopic Molecular Weight

925.173117173

IUPAC Name

7-{[2-(3-{3-[({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-2-hydroxy-3-methylbutanamido}propanamido)ethyl]sulfanyl}-5-hydroxy-7-oxoheptanoic acid

Traditional Name

7-({2-[3-(3-{[({[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]methyl}-2-hydroxy-3-methylbutanamido)propanamido]ethyl}sulfanyl)-5-hydroxy-7-oxoheptanoic acid

CAS Registry Number

Not Available

SMILES

CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N)C(O)C(=O)NCCC(=O)NCCSC(=O)CC(O)CCCC(O)=O

InChI Identifier

InChI=1S/C28H46N7O20P3S/c1-28(2,23(42)26(43)31-7-6-17(37)30-8-9-59-19(40)10-15(36)4-3-5-18(38)39)12-52-58(49,50)55-57(47,48)51-11-16-22(54-56(44,45)46)21(41)27(53-16)35-14-34-20-24(29)32-13-33-25(20)35/h13-16,21-23,27,36,41-42H,3-12H2,1-2H3,(H,30,37)(H,31,43)(H,38,39)(H,47,48)(H,49,50)(H2,29,32,33)(H2,44,45,46)/t15?,16-,21-,22-,23?,27-/m1/s1

InChI Key

VGEBXBQECGWCRH-PUEFWPISSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-hydroxyacyl coas. These are organic compounds containing a 3-hydroxyl acylated coenzyme A derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl thioesters

Direct Parent

3-hydroxyacyl CoAs

Alternative Parents

Substituents

Coenzyme a or derivatives
Purine ribonucleoside diphosphate
Purine ribonucleoside bisphosphate
Purine ribonucleoside 3',5'-bisphosphate
Ribonucleoside 3'-phosphate
Pentose-5-phosphate
Pentose phosphate
Beta amino acid or derivatives
Glycosyl compound
N-glycosyl compound
6-aminopurine
Monosaccharide phosphate
Organic pyrophosphate
Imidazopyrimidine
Purine
Medium-chain fatty acid
Hydroxy fatty acid
Monoalkyl phosphate
Aminopyrimidine
Sugar acid
Fatty amide
Monosaccharide
N-acyl-amine
N-substituted imidazole
Organic phosphoric acid derivative
Fatty acid
Imidolactam
Phosphoric acid ester
Alkyl phosphate
Pyrimidine
Tetrahydrofuran
Azole
Heteroaromatic compound
Imidazole
Secondary carboxylic acid amide
Secondary alcohol
Carboxamide group
Thiocarboxylic acid ester
Carbothioic s-ester
Amino acid
Amino acid or derivatives
Azacycle
Monocarboxylic acid or derivatives
Oxacycle
Sulfenyl compound
Organoheterocyclic compound
Carboxylic acid derivative
Thiocarboxylic acid or derivatives
Carboxylic acid
Organooxygen compound
Organic oxide
Organic nitrogen compound
Hydrocarbon derivative
Primary amine
Organopnictogen compound
Carbonyl group
Alcohol
Amine
Organosulfur compound
Organic oxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Excreta

Biofluid or Excreta

Urine (HMDB: HMDB0012155)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0012155)

Source

Endogenous

Endogenous (HMDB: HMDB0012155)

Animal

Animal (HMDB: HMDB0012155)

Exogenous

Food

Food (HMDB: HMDB0012155)

Animal origin

Poultry

Pheasant (FooDB: FOOD00430)
Squab (FooDB: FOOD00481)
Turkey (FooDB: FOOD00494)
Quail (FooDB: FOOD00541)
Anatidae (FooDB: FOOD00576)
Rock ptarmigan (FooDB: FOOD00597)
Columbidae (Dove, Pigeon) (FooDB: FOOD00610)
Chicken (FooDB: FOOD00329)
Mallard duck (FooDB: FOOD00353)
Emu (FooDB: FOOD00360)
Greylag goose (FooDB: FOOD00368)
Guinea hen (FooDB: FOOD00373)
Ostrich (FooDB: FOOD00422)
Velvet duck (FooDB: FOOD00427)

Lagomorph

Ovis

Sheep (Mutton, Lamb) (FooDB: FOOD00473)

Bovine

Venison

Deer (FooDB: FOOD00524)
Mule deer (FooDB: FOOD00348)
Elk (FooDB: FOOD00359)

Caprae

Domestic goat (FooDB: FOOD00529)

Swine

Domestic pig (FooDB: FOOD00536)
Wild boar (FooDB: FOOD00307)

Equine

Horse (FooDB: FOOD00378)

Exogenous (HMDB: HMDB0012155)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0012155)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0012155)

Lipid metabolism pathway (HMDB: HMDB0012155)

Cellular process

Cell signaling (HMDB: HMDB0012155)

Biochemical process

Lipid transport (HMDB: HMDB0012155)

Role

Biological role

Energy source (HMDB: HMDB0012155)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0012155)

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	3.47 g/L	ALOGPS
logP	-0.61	ALOGPS
logP	-7	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	0.83	ChemAxon
pKa (Strongest Basic)	5	ChemAxon
Physiological Charge	-5	ChemAxon
Hydrogen Acceptor Count	20	ChemAxon
Hydrogen Donor Count	11	ChemAxon
Polar Surface Area	421.16 Å²	ChemAxon
Rotatable Bond Count	26	ChemAxon
Refractivity	198.42 m³·mol⁻¹	ChemAxon
Polarizability	82.5 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	256.52	30932474
DeepCCS	[M-H]-	254.794	30932474
DeepCCS	[M-2H]-	288.83	30932474
DeepCCS	[M+Na]+	262.849	30932474
AllCCS	[M+H]+	265.7	32859911
AllCCS	[M+H-H2O]+	266.4	32859911
AllCCS	[M+NH4]+	265.0	32859911
AllCCS	[M+Na]+	264.8	32859911
AllCCS	[M-H]-	270.8	32859911
AllCCS	[M+Na-2H]-	275.5	32859911
AllCCS	[M+HCOO]-	280.6	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	3.52 minutes	32390414
Predicted by Siyang on May 30, 2022	10.5732 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	9.5 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	608.7 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	1014.6 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	182.2 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	94.7 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	176.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	84.1 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	365.6 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	409.9 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	1066.8 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	677.8 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	263.8 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	731.5 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	221.5 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	303.5 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	684.8 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	455.1 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	685.4 seconds	40023050

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 10V, Positive-QTOF	splash10-000i-1931201123-c931ad053d2db638a7f9	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 20V, Positive-QTOF	splash10-000i-0931400000-5731b613074a18f89fdb	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 40V, Positive-QTOF	splash10-000i-1910100000-aee9fe0e159172708a5d	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 10V, Negative-QTOF	splash10-0a59-2901030313-33d35686e6a262829743	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 20V, Negative-QTOF	splash10-0560-3911120000-9df07ec2252438a992d8	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 40V, Negative-QTOF	splash10-057i-5900100000-ba770b88b391497a85e2	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 10V, Negative-QTOF	splash10-0ab9-0000000009-7c00c46b8d4d02e8b208	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 20V, Negative-QTOF	splash10-0a4r-9400002677-d6c518e0445c7c509dc4	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 40V, Negative-QTOF	splash10-004i-7401310691-f451e3c0616ed1733129	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 10V, Positive-QTOF	splash10-0a4l-1300000049-ee30528b3b5093e94033	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 20V, Positive-QTOF	splash10-000i-2900100042-87ae43e7cb802128e779	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxypimelyl-CoA 40V, Positive-QTOF	splash10-014i-0102900000-94a68f154c7d941b058a	2021-09-23	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-16	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB028812

KNApSAcK ID

Not Available

Chemspider ID

389938

KEGG Compound ID

C06714

BioCyc ID

3-HYDROXYPIMELYL-COA

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

441146

PDB ID

Not Available

ChEBI ID

15485

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for 3-Hydroxypimelyl-CoA (HMDB0012155)

MOL for HMDB0012155 (3-Hydroxypimelyl-CoA)

3D MOL for HMDB0012155 (3-Hydroxypimelyl-CoA)

3D SDF for HMDB0012155 (3-Hydroxypimelyl-CoA)

3D-SDF for HMDB0012155 (3-Hydroxypimelyl-CoA)

PDB for HMDB0012155 (3-Hydroxypimelyl-CoA)

3D PDB for HMDB0012155 (3-Hydroxypimelyl-CoA)

SMILES for HMDB0012155 (3-Hydroxypimelyl-CoA)

INCHI for HMDB0012155 (3-Hydroxypimelyl-CoA)

Structure for HMDB0012155 (3-Hydroxypimelyl-CoA)

3D Structure for HMDB0012155 (3-Hydroxypimelyl-CoA)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

MS/MS Spectra

NMR Spectra