Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-06 15:00:53 UTC
Update Date2021-09-14 14:59:54 UTC
HMDB IDHMDB0014029
Secondary Accession Numbers
  • HMDB14029
Metabolite Identification
Common NameMethylhydroxygliclazide
DescriptionMethylhydroxygliclazide is only found in individuals that have used or taken Gliclazide. Methylhydroxygliclazide is a metabolite of Gliclazide. Methylhydroxygliclazide belongs to the family of Benzenesulfonamides. These are organic compounds containing a sulfonamide group that is S-linked to a benzene ring.
Structure
Data?1582753162
Synonyms
ValueSource
Hydroxygliclazide, (cis)-isomerHMDB
HydroxygliclazideHMDB
N-[4-(Hydroxymethyl)benzenesulfonyl]-n'-{octahydrocyclopenta[c]pyrrol-2-yl}carbamimidateHMDB
N-[4-(Hydroxymethyl)benzenesulphonyl]-n'-{octahydrocyclopenta[c]pyrrol-2-yl}carbamimidateHMDB
N-[4-(Hydroxymethyl)benzenesulphonyl]-n'-{octahydrocyclopenta[c]pyrrol-2-yl}carbamimidic acidHMDB
Chemical FormulaC15H21N3O4S
Average Molecular Weight339.41
Monoisotopic Molecular Weight339.125276865
IUPAC Name1-[4-(hydroxymethyl)benzenesulfonyl]-3-{octahydrocyclopenta[c]pyrrol-2-yl}urea
Traditional Name3-{hexahydro-1H-cyclopenta[c]pyrrol-2-yl}-1-[4-(hydroxymethyl)benzenesulfonyl]urea
CAS Registry NumberNot Available
SMILES
OCC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCCC2C1
InChI Identifier
InChI=1S/C15H21N3O4S/c19-10-11-4-6-14(7-5-11)23(21,22)17-15(20)16-18-8-12-2-1-3-13(12)9-18/h4-7,12-13,19H,1-3,8-10H2,(H2,16,17,20)
InChI KeyIHCHVBQHVIUSTM-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzenesulfonamides. These are organic compounds containing a sulfonamide group that is S-linked to a benzene ring.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzenesulfonamides
Direct ParentBenzenesulfonamides
Alternative Parents
Substituents
  • Benzenesulfonamide
  • Benzenesulfonyl group
  • Benzyl alcohol
  • Sulfonylurea
  • Pyrrolidine
  • Semicarbazide
  • Organic sulfonic acid or derivatives
  • Organosulfonic acid or derivatives
  • Aminosulfonyl compound
  • Sulfonyl
  • Carbonic acid derivative
  • Azacycle
  • Organoheterocyclic compound
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Primary alcohol
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aromatic alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.36 g/LALOGPS
logP0.68ALOGPS
logP0.45ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)4.07ChemAxon
pKa (Strongest Basic)1.36ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area98.74 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity85.65 m³·mol⁻¹ChemAxon
Polarizability35.21 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+180.29531661259
DarkChem[M-H]-176.77831661259
DeepCCS[M+H]+174.01930932474
DeepCCS[M-H]-171.66130932474
DeepCCS[M-2H]-205.17930932474
DeepCCS[M+Na]+180.40630932474
AllCCS[M+H]+177.532859911
AllCCS[M+H-H2O]+174.632859911
AllCCS[M+NH4]+180.232859911
AllCCS[M+Na]+180.932859911
AllCCS[M-H]-175.132859911
AllCCS[M+Na-2H]-175.232859911
AllCCS[M+HCOO]-175.432859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.52 minutes32390414
Predicted by Siyang on May 30, 202211.154 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.52 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid90.5 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1176.9 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid219.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid133.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid174.9 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid130.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid349.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid424.3 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)420.1 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid821.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid359.9 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1309.4 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid263.2 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid277.5 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate367.2 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA206.6 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water206.8 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
MethylhydroxygliclazideOCC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCCC2C14001.1Standard polar33892256
MethylhydroxygliclazideOCC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCCC2C12152.7Standard non polar33892256
MethylhydroxygliclazideOCC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCCC2C13117.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Methylhydroxygliclazide,1TMS,isomer #1C[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)NN2CC3CCCC3C2)C=C13144.4Semi standard non polar33892256
Methylhydroxygliclazide,1TMS,isomer #2C[Si](C)(C)N(C(=O)NN1CC2CCCC2C1)S(=O)(=O)C1=CC=C(CO)C=C13031.9Semi standard non polar33892256
Methylhydroxygliclazide,1TMS,isomer #3C[Si](C)(C)N(C(=O)NS(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C13013.3Semi standard non polar33892256
Methylhydroxygliclazide,2TMS,isomer #1C[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCCC3C2)[Si](C)(C)C)C=C13012.3Semi standard non polar33892256
Methylhydroxygliclazide,2TMS,isomer #1C[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCCC3C2)[Si](C)(C)C)C=C12963.3Standard non polar33892256
Methylhydroxygliclazide,2TMS,isomer #1C[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCCC3C2)[Si](C)(C)C)C=C14211.4Standard polar33892256
Methylhydroxygliclazide,2TMS,isomer #2C[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCCC3C2)[Si](C)(C)C)C=C13013.3Semi standard non polar33892256
Methylhydroxygliclazide,2TMS,isomer #2C[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCCC3C2)[Si](C)(C)C)C=C12979.9Standard non polar33892256
Methylhydroxygliclazide,2TMS,isomer #2C[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCCC3C2)[Si](C)(C)C)C=C14136.5Standard polar33892256
Methylhydroxygliclazide,2TMS,isomer #3C[Si](C)(C)N(C(=O)N([Si](C)(C)C)S(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C12954.9Semi standard non polar33892256
Methylhydroxygliclazide,2TMS,isomer #3C[Si](C)(C)N(C(=O)N([Si](C)(C)C)S(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C13098.3Standard non polar33892256
Methylhydroxygliclazide,2TMS,isomer #3C[Si](C)(C)N(C(=O)N([Si](C)(C)C)S(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C14165.2Standard polar33892256
Methylhydroxygliclazide,3TMS,isomer #1C[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCCC3C2)[Si](C)(C)C)[Si](C)(C)C)C=C12970.4Semi standard non polar33892256
Methylhydroxygliclazide,3TMS,isomer #1C[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCCC3C2)[Si](C)(C)C)[Si](C)(C)C)C=C13132.9Standard non polar33892256
Methylhydroxygliclazide,3TMS,isomer #1C[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCCC3C2)[Si](C)(C)C)[Si](C)(C)C)C=C13891.2Standard polar33892256
Methylhydroxygliclazide,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)NN2CC3CCCC3C2)C=C13372.0Semi standard non polar33892256
Methylhydroxygliclazide,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)N(C(=O)NN1CC2CCCC2C1)S(=O)(=O)C1=CC=C(CO)C=C13299.7Semi standard non polar33892256
Methylhydroxygliclazide,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C(=O)NS(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C13287.1Semi standard non polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)C=C13533.9Semi standard non polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)C=C13393.9Standard non polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)C=C14273.5Standard polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)C=C13502.8Semi standard non polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)C=C13434.7Standard non polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)C=C14158.2Standard polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C(=O)N([Si](C)(C)C(C)(C)C)S(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C13506.3Semi standard non polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C(=O)N([Si](C)(C)C(C)(C)C)S(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C13589.3Standard non polar33892256
Methylhydroxygliclazide,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C(=O)N([Si](C)(C)C(C)(C)C)S(=O)(=O)C1=CC=C(CO)C=C1)N1CC2CCCC2C14180.1Standard polar33892256
Methylhydroxygliclazide,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13728.4Semi standard non polar33892256
Methylhydroxygliclazide,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13805.4Standard non polar33892256
Methylhydroxygliclazide,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCCC3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13975.8Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Methylhydroxygliclazide GC-MS (Non-derivatized) - 70eV, Positivesplash10-097i-3913000000-d5b7a9fe572c5cfdd3142017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Methylhydroxygliclazide GC-MS (1 TMS) - 70eV, Positivesplash10-00di-7902000000-139b672ed53e779ac8e42017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Methylhydroxygliclazide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 10V, Positive-QTOFsplash10-00dl-0907000000-bada486d2e0053d289652016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 20V, Positive-QTOFsplash10-004i-0900000000-e3d4f2208243d45f34412016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 40V, Positive-QTOFsplash10-0ar0-9400000000-3997fb8164854274b1942016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 10V, Negative-QTOFsplash10-000i-0729000000-def7f3e3241c90a07ab72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 20V, Negative-QTOFsplash10-002r-1910000000-4f2219f12aa45842a1412016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 40V, Negative-QTOFsplash10-004r-5900000000-afb3ae7c4e7995d4aeb12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 10V, Negative-QTOFsplash10-000i-0209000000-8eabf2f080be4e388ccf2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 20V, Negative-QTOFsplash10-000i-2932000000-4ed4470b46f14273503b2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 40V, Negative-QTOFsplash10-0a4r-5900000000-291c5c0d4caa2319ce642021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 10V, Positive-QTOFsplash10-0f6x-0907000000-b1a366244c3debf36e662021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 20V, Positive-QTOFsplash10-03dl-0903000000-5db0bc6e7a1b362a31962021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methylhydroxygliclazide 40V, Positive-QTOFsplash10-0btc-6910000000-39d9717a7a409936f2352021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID166865
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound192219
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available