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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:30:10 UTC
Update Date2022-03-07 02:52:09 UTC
HMDB IDHMDB0029396
Secondary Accession Numbers
  • HMDB29396
Metabolite Identification
Common NameL-cis-3-Amino-2-pyrrolidinecarboxylic acid
DescriptionL-cis-3-Amino-2-pyrrolidinecarboxylic acid, also known as L-cis-3-aminoproline or 3-aminopyrrolidine-2-carboxylate, belongs to the class of organic compounds known as proline and derivatives. Proline and derivatives are compounds containing proline or a derivative thereof resulting from reaction of proline at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. Based on a literature review a significant number of articles have been published on L-cis-3-Amino-2-pyrrolidinecarboxylic acid.
Structure
Data?1582753412
Synonyms
ValueSource
L-cis-3-Amino-2-pyrrolidinecarboxylateGenerator
L-cis-3-AminoprolineHMDB
3-Aminopyrrolidine-2-carboxylateHMDB
Chemical FormulaC5H10N2O2
Average Molecular Weight130.1451
Monoisotopic Molecular Weight130.074227574
IUPAC Name3-aminopyrrolidine-2-carboxylic acid
Traditional Name3-aminopyrrolidine-2-carboxylic acid
CAS Registry Number25876-88-4
SMILES
NC1CCNC1C(O)=O
InChI Identifier
InChI=1S/C5H10N2O2/c6-3-1-2-7-4(3)5(8)9/h3-4,7H,1-2,6H2,(H,8,9)
InChI KeyVJLXSTXGGXYQCT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as proline and derivatives. Proline and derivatives are compounds containing proline or a derivative thereof resulting from reaction of proline at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentProline and derivatives
Alternative Parents
Substituents
  • Proline or derivatives
  • Alpha-amino acid
  • Pyrrolidine carboxylic acid
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine
  • Amino acid
  • Carboxylic acid
  • Azacycle
  • Organoheterocyclic compound
  • Secondary amine
  • Secondary aliphatic amine
  • Monocarboxylic acid or derivatives
  • Organic nitrogen compound
  • Organic oxygen compound
  • Primary amine
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Primary aliphatic amine
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Amine
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point215 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility293 g/LALOGPS
logP-3.1ALOGPS
logP-3.8ChemAxon
logS0.35ALOGPS
pKa (Strongest Acidic)1.59ChemAxon
pKa (Strongest Basic)10.84ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area75.35 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity31.04 m³·mol⁻¹ChemAxon
Polarizability12.69 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+127.50631661259
DarkChem[M-H]-121.04231661259
DeepCCS[M+H]+128.96430932474
DeepCCS[M-H]-126.20230932474
DeepCCS[M-2H]-162.47130932474
DeepCCS[M+Na]+137.3330932474
AllCCS[M+H]+128.832859911
AllCCS[M+H-H2O]+124.132859911
AllCCS[M+NH4]+133.132859911
AllCCS[M+Na]+134.432859911
AllCCS[M-H]-121.832859911
AllCCS[M+Na-2H]-123.932859911
AllCCS[M+HCOO]-126.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
L-cis-3-Amino-2-pyrrolidinecarboxylic acidNC1CCNC1C(O)=O2400.9Standard polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acidNC1CCNC1C(O)=O1266.9Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acidNC1CCNC1C(O)=O1636.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,1TMS,isomer #1C[Si](C)(C)OC(=O)C1NCCC1N1362.1Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,1TMS,isomer #2C[Si](C)(C)NC1CCNC1C(=O)O1562.3Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,1TMS,isomer #3C[Si](C)(C)N1CCC(N)C1C(=O)O1452.9Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #1C[Si](C)(C)NC1CCNC1C(=O)O[Si](C)(C)C1527.5Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #1C[Si](C)(C)NC1CCNC1C(=O)O[Si](C)(C)C1503.3Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)C1C(N)CCN1[Si](C)(C)C1486.3Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)C1C(N)CCN1[Si](C)(C)C1457.5Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #3C[Si](C)(C)N(C1CCNC1C(=O)O)[Si](C)(C)C1698.5Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #3C[Si](C)(C)N(C1CCNC1C(=O)O)[Si](C)(C)C1578.3Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #4C[Si](C)(C)NC1CCN([Si](C)(C)C)C1C(=O)O1601.5Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TMS,isomer #4C[Si](C)(C)NC1CCN([Si](C)(C)C)C1C(=O)O1524.9Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)C1NCCC1N([Si](C)(C)C)[Si](C)(C)C1713.7Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)C1NCCC1N([Si](C)(C)C)[Si](C)(C)C1679.8Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TMS,isomer #2C[Si](C)(C)NC1CCN([Si](C)(C)C)C1C(=O)O[Si](C)(C)C1593.9Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TMS,isomer #2C[Si](C)(C)NC1CCN([Si](C)(C)C)C1C(=O)O[Si](C)(C)C1644.5Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TMS,isomer #3C[Si](C)(C)N1CCC(N([Si](C)(C)C)[Si](C)(C)C)C1C(=O)O1743.8Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TMS,isomer #3C[Si](C)(C)N1CCC(N([Si](C)(C)C)[Si](C)(C)C)C1C(=O)O1677.7Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,4TMS,isomer #1C[Si](C)(C)OC(=O)C1C(N([Si](C)(C)C)[Si](C)(C)C)CCN1[Si](C)(C)C1778.7Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,4TMS,isomer #1C[Si](C)(C)OC(=O)C1C(N([Si](C)(C)C)[Si](C)(C)C)CCN1[Si](C)(C)C1774.2Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1NCCC1N1618.4Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)NC1CCNC1C(=O)O1798.4Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1CCC(N)C1C(=O)O1717.6Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1CCNC1C(=O)O[Si](C)(C)C(C)(C)C1963.7Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1CCNC1C(=O)O[Si](C)(C)C(C)(C)C1919.3Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1C(N)CCN1[Si](C)(C)C(C)(C)C1931.8Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1C(N)CCN1[Si](C)(C)C(C)(C)C1887.4Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C1CCNC1C(=O)O)[Si](C)(C)C(C)(C)C2111.2Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C1CCNC1C(=O)O)[Si](C)(C)C(C)(C)C2019.4Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)NC1CCN([Si](C)(C)C(C)(C)C)C1C(=O)O2069.0Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)NC1CCN([Si](C)(C)C(C)(C)C)C1C(=O)O1959.2Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1NCCC1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2314.7Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1NCCC1N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2276.7Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)NC1CCN([Si](C)(C)C(C)(C)C)C1C(=O)O[Si](C)(C)C(C)(C)C2251.1Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)NC1CCN([Si](C)(C)C(C)(C)C)C1C(=O)O[Si](C)(C)C(C)(C)C2252.4Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1CCC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C1C(=O)O2365.8Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1CCC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C1C(=O)O2310.4Standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C2630.3Semi standard non polar33892256
L-cis-3-Amino-2-pyrrolidinecarboxylic acid,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C2547.9Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a6u-9000000000-78cb9a1895b79c7b7a4e2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid GC-MS (1 TMS) - 70eV, Positivesplash10-0abc-9200000000-ef86c69af08195670e4a2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 10V, Negative-QTOFsplash10-004r-6900000000-80a0c6a0089a8f6503212015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 20V, Negative-QTOFsplash10-01ri-9600000000-7e48ee1222177452c9682015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 40V, Negative-QTOFsplash10-014r-9100000000-112f0c10008b733083502015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 10V, Negative-QTOFsplash10-004i-0900000000-02ef78896b309f4af9f02021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 20V, Negative-QTOFsplash10-0096-9500000000-56e0f99e3cbf9915eae92021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 40V, Negative-QTOFsplash10-0a4l-9000000000-94451bd5935c37630fd52021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 10V, Positive-QTOFsplash10-03e9-2900000000-f162b090a7100e2db22a2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 20V, Positive-QTOFsplash10-03di-8900000000-867e5b2ec02907a4ba852015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 40V, Positive-QTOFsplash10-0gi3-9000000000-ea6428a48213ecbcee5f2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 10V, Positive-QTOFsplash10-000i-9400000000-60554e6045afe585dddd2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 20V, Positive-QTOFsplash10-00kr-9000000000-0142ce47b13403efce842021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - L-cis-3-Amino-2-pyrrolidinecarboxylic acid 40V, Positive-QTOFsplash10-0596-9000000000-5407f402ee66c25513d12021-09-25Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000485
KNApSAcK IDNot Available
Chemspider ID13605823
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound21998160
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .