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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:32:56 UTC
Update Date2022-03-07 02:52:18 UTC
HMDB IDHMDB0029832
Secondary Accession Numbers
  • HMDB29832
Metabolite Identification
Common Name8-Carboxymethyldihydrochelerythrine
Description8-Carboxymethyldihydrochelerythrine belongs to the class of organic compounds known as dihydrobenzophenanthridine alkaloids. These are alkaloids containing a dihydrobenzophenanthridine skeleton, which is a tetracyclic compound containing a benzene fused to a dihydrophenanthridine moiety. 8-Carboxymethyldihydrochelerythrine is a moderately basic compound (based on its pKa). Outside of the human body, 8-carboxymethyldihydrochelerythrine has been detected, but not quantified in, fruits and herbs and spices. This could make 8-carboxymethyldihydrochelerythrine a potential biomarker for the consumption of these foods.
Structure
Data?1582753472
Synonyms
ValueSource
2-{17,18-dimethoxy-21-methyl-5,7-dioxa-21-azapentacyclo[11.8.0.0²,¹⁰.0⁴,⁸.0¹⁴,¹⁹]henicosa-1(13),2,4(8),9,11,14(19),15,17-octaen-20-yl}acetateGenerator
Chemical FormulaC23H21NO6
Average Molecular Weight407.4159
Monoisotopic Molecular Weight407.136887409
IUPAC Name2-{17,18-dimethoxy-21-methyl-5,7-dioxa-21-azapentacyclo[11.8.0.0²,¹⁰.0⁴,⁸.0¹⁴,¹⁹]henicosa-1(13),2,4(8),9,11,14(19),15,17-octaen-20-yl}acetic acid
Traditional Name{17,18-dimethoxy-21-methyl-5,7-dioxa-21-azapentacyclo[11.8.0.0²,¹⁰.0⁴,⁸.0¹⁴,¹⁹]henicosa-1(13),2,4(8),9,11,14(19),15,17-octaen-20-yl}acetic acid
CAS Registry NumberNot Available
SMILES
COC1=C(OC)C2=C(C=C1)C1=C(N(C)C2CC(O)=O)C2=CC3=C(OCO3)C=C2C=C1
InChI Identifier
InChI=1S/C23H21NO6/c1-24-16(10-20(25)26)21-13(6-7-17(27-2)23(21)28-3)14-5-4-12-8-18-19(30-11-29-18)9-15(12)22(14)24/h4-9,16H,10-11H2,1-3H3,(H,25,26)
InChI KeyOZWQDEDYZWNLMM-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dihydrobenzophenanthridine alkaloids. These are alkaloids containing a dihydrobenzophenanthridine skeleton, which is a tetracyclic compound containing a benzene fused to a dihydrophenanthridine moiety.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassBenzophenanthridine alkaloids
Sub ClassDihydrobenzophenanthridine alkaloids
Direct ParentDihydrobenzophenanthridine alkaloids
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.035 g/LALOGPS
logP3.52ALOGPS
logP3.55ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)3.95ChemAxon
pKa (Strongest Basic)1.56ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area77.46 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity109.78 m³·mol⁻¹ChemAxon
Polarizability42.78 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+192.17431661259
DarkChem[M-H]-190.73931661259
DeepCCS[M+H]+195.15230932474
DeepCCS[M-H]-192.75630932474
DeepCCS[M-2H]-225.88930932474
DeepCCS[M+Na]+201.17330932474
AllCCS[M+H]+197.532859911
AllCCS[M+H-H2O]+194.732859911
AllCCS[M+NH4]+200.032859911
AllCCS[M+Na]+200.732859911
AllCCS[M-H]-200.632859911
AllCCS[M+Na-2H]-200.332859911
AllCCS[M+HCOO]-200.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
8-CarboxymethyldihydrochelerythrineCOC1=C(OC)C2=C(C=C1)C1=C(N(C)C2CC(O)=O)C2=CC3=C(OCO3)C=C2C=C15205.0Standard polar33892256
8-CarboxymethyldihydrochelerythrineCOC1=C(OC)C2=C(C=C1)C1=C(N(C)C2CC(O)=O)C2=CC3=C(OCO3)C=C2C=C13242.9Standard non polar33892256
8-CarboxymethyldihydrochelerythrineCOC1=C(OC)C2=C(C=C1)C1=C(N(C)C2CC(O)=O)C2=CC3=C(OCO3)C=C2C=C13683.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
8-Carboxymethyldihydrochelerythrine,1TMS,isomer #1COC1=CC=C2C3=C(C4=CC5=C(C=C4C=C3)OCO5)N(C)C(CC(=O)O[Si](C)(C)C)C2=C1OC3656.6Semi standard non polar33892256
8-Carboxymethyldihydrochelerythrine,1TBDMS,isomer #1COC1=CC=C2C3=C(C4=CC5=C(C=C4C=C3)OCO5)N(C)C(CC(=O)O[Si](C)(C)C(C)(C)C)C2=C1OC3909.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 8-Carboxymethyldihydrochelerythrine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-0119000000-94d9be52b1e0d63f6e3d2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 8-Carboxymethyldihydrochelerythrine GC-MS (1 TMS) - 70eV, Positivesplash10-02os-6119500000-67af312425d0a0a695b62017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 8-Carboxymethyldihydrochelerythrine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 10V, Positive-QTOFsplash10-0a4l-0009700000-c02388156f30e9c7842a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 20V, Positive-QTOFsplash10-054o-1009200000-7e2e071d7285a8723f672016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 40V, Positive-QTOFsplash10-00aj-3019000000-25b0655a57211f2b71442016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 10V, Negative-QTOFsplash10-0a4i-0005900000-0574ad1f98791ab3ac5c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 20V, Negative-QTOFsplash10-0bta-0009300000-4b701675c150d345fe342016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 40V, Negative-QTOFsplash10-006t-0019000000-9ef0ee67479e3103a0f42016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 10V, Positive-QTOFsplash10-0a4i-0002900000-62b2aa573a41acc75b742021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 20V, Positive-QTOFsplash10-03di-0009200000-502611e344dda86b6d632021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 40V, Positive-QTOFsplash10-00lr-0009000000-e8f4ef1c2c46b9738b0b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 10V, Negative-QTOFsplash10-0a4i-0003900000-d03aef280831e0f651f72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 20V, Negative-QTOFsplash10-0a4j-0009500000-6b1653a2893af01006bf2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Carboxymethyldihydrochelerythrine 40V, Negative-QTOFsplash10-01qc-1009100000-a3aebb5a464cfd9db3b42021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB001047
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound13946324
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .