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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:53:08 UTC
Update Date2023-02-21 17:22:57 UTC
HMDB IDHMDB0032993
Secondary Accession Numbers
  • HMDB32993
Metabolite Identification
Common Name2-Thiophenemethanol
Description2-Thiophenemethanol belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom. 2-Thiophenemethanol has been detected, but not quantified in, asparagus (Asparagus officinalis) and corns (Zea mays). This could make 2-thiophenemethanol a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 2-Thiophenemethanol.
Structure
Data?1677000177
Synonyms
ValueSource
2-(Hydroxymethyl)-thiopheneHMDB
2-(Hydroxymethyl)thiopheneHMDB
2-HydroxymethylthiopheneHMDB
2-Thenyl alcoholHMDB
2-Thienyl carbinolHMDB
2-ThienylmethanolHMDB
2-ThiophenecarbinolHMDB
Thenyl alcoholHMDB
Thiophene-2-methanolHMDB
Chemical FormulaC5H6OS
Average Molecular Weight114.166
Monoisotopic Molecular Weight114.013935504
IUPAC Name(thiophen-2-yl)methanol
Traditional Name2-hydroxymethylthiophene
CAS Registry Number636-72-6
SMILES
OCC1=CC=CS1
InChI Identifier
InChI=1S/C5H6OS/c6-4-5-2-1-3-7-5/h1-3,6H,4H2
InChI KeyZPHGMBGIFODUMF-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassHeteroaromatic compounds
Sub ClassNot Available
Direct ParentHeteroaromatic compounds
Alternative Parents
Substituents
  • Heteroaromatic compound
  • Thiophene
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Aromatic alcohol
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point206.00 to 207.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility61580 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP0.87Not Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.12 g/LALOGPS
logP0.96ALOGPS
logP1.12ChemAxon
logS-1.7ALOGPS
pKa (Strongest Acidic)14.52ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity29.76 m³·mol⁻¹ChemAxon
Polarizability11.56 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+119.68631661259
DarkChem[M-H]-115.4231661259
DeepCCS[M+H]+126.49230932474
DeepCCS[M-H]-124.57430932474
DeepCCS[M-2H]-160.09730932474
DeepCCS[M+Na]+134.34330932474
AllCCS[M+H]+121.632859911
AllCCS[M+H-H2O]+116.732859911
AllCCS[M+NH4]+126.232859911
AllCCS[M+Na]+127.532859911
AllCCS[M-H]-123.532859911
AllCCS[M+Na-2H]-126.532859911
AllCCS[M+HCOO]-129.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
2-ThiophenemethanolOCC1=CC=CS11947.6Standard polar33892256
2-ThiophenemethanolOCC1=CC=CS1997.2Standard non polar33892256
2-ThiophenemethanolOCC1=CC=CS11021.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
2-Thiophenemethanol,1TMS,isomer #1C[Si](C)(C)OCC1=CC=CS11151.1Semi standard non polar33892256
2-Thiophenemethanol,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC1=CC=CS11364.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 2-Thiophenemethanol EI-B (Non-derivatized)splash10-01p2-9200000000-47c937806f652ce016bb2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 2-Thiophenemethanol EI-B (Non-derivatized)splash10-01p2-9200000000-47c937806f652ce016bb2018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Thiophenemethanol GC-MS (Non-derivatized) - 70eV, Positivesplash10-03ej-9200000000-30c55df5a45b25fd721b2016-09-22Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Thiophenemethanol GC-MS (1 TMS) - 70eV, Positivesplash10-00dj-9300000000-82fcda87de1eb9090bd32017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Thiophenemethanol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Thiophenemethanol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 10V, Positive-QTOFsplash10-014i-0900000000-45ae3dfb163ca6b4a3fb2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 20V, Positive-QTOFsplash10-014i-2900000000-ca758e19bb02b4499b752016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 40V, Positive-QTOFsplash10-0gbi-9000000000-cb1993e6df60547dd10b2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 10V, Negative-QTOFsplash10-03di-6900000000-3118be7acb34bda8aaa12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 20V, Negative-QTOFsplash10-001i-9200000000-c288b8149b6c2c4574ed2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 40V, Negative-QTOFsplash10-0a4i-9000000000-d3d8609c4b85c3b594872016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 10V, Negative-QTOFsplash10-03e9-9600000000-0cd3d42211d88317eb972021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 20V, Negative-QTOFsplash10-001i-9000000000-7d99ce9954aa98dbedf62021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 40V, Negative-QTOFsplash10-001i-9000000000-48958326fc65c92da3672021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 10V, Positive-QTOFsplash10-0002-9100000000-dfc52436dcbf3cdcf6032021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 20V, Positive-QTOFsplash10-0002-9000000000-167ccc56d8088db4ba452021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Thiophenemethanol 40V, Positive-QTOFsplash10-0udj-9000000000-908be216500660ef5d902021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB010982
KNApSAcK IDNot Available
Chemspider ID62674
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound69467
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1181071
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .