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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 20:15:58 UTC

Update Date

2022-03-07 02:54:27 UTC

HMDB ID

HMDB0035306

Secondary Accession Numbers

HMDB35306

Metabolite Identification

Common Name

Epishyobunone

Description

Epishyobunone belongs to the class of organic compounds known as elemane sesquiterpenoids. These are sesquiterpenoids with a structure based on the elemane skeleton. Elemane is a monocyclic compound consisting of a cyclohexane ring substituted with a methyl group, an ethyl group, and two 1-methylethyl groups at the 1-, 1-, 2-, and 4-position, respectively. Based on a literature review a small amount of articles have been published on Epishyobunone.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0035306
     RDKit          3D
Epishyobunone
 40 40  0  0  0  0  0  0  0  0999 V2000
   -2.7113   -1.7296   -1.7409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6915   -1.2440   -0.5078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4307   -0.7737    0.1304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8491   -0.0277    1.3852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6154   -1.9673    0.4825 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8465   -1.7137    0.6448 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5301   -0.9325   -0.3980 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7585   -0.2841    0.2639 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5456    0.5501   -0.6860 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4455    0.3869    1.5547 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6518    0.0543   -1.0095 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1409    0.8673   -1.8309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7686    0.2102   -0.7733 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0542    1.6256   -0.3850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1360    2.5091   -0.0457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4843    2.1216   -0.3685 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5982   -2.0807   -2.2419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7746   -1.7742   -2.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6508   -1.2128    0.0026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9095    0.2412    1.3706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6723   -0.6986    2.2398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1777    0.8649    1.5433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7352   -2.7956   -0.2480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9729   -2.3804    1.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3818   -2.7141    0.6965 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0443   -1.2719    1.6433 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0006   -1.5995   -1.1981 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4102   -1.1747    0.5223 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6421    0.5250   -0.4418 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4410    0.1536   -1.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2359    1.6269   -0.6120 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8422   -0.1794    2.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4151    0.7061    1.6986 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0589    1.3371    1.5754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2477    0.1392   -1.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4312    3.5124    0.2214 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9017    2.2431   -0.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6691    2.5134    0.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1889    1.3725   -0.7252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5234    2.9943   -1.0731 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
  7 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  2  3
 14 16  1  0
 13  3  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  4 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  5 24  1  0
  6 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 10 34  1  0
 13 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 16 39  1  0
 16 40  1  0
M  END


  Mrv0541 05061308422D          

 16 16  0  0  0  0            999 V2000
    0.4663    2.6447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2448    1.8695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1842    1.8695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  7  1  2  0  0  0  0
  9  8  1  0  0  0  0
 10  2  1  0  0  0  0
 10  3  1  0  0  0  0
 11  4  2  0  0  0  0
 11  5  1  0  0  0  0
 12  8  1  0  0  0  0
 12 10  1  0  0  0  0
 13 11  1  0  0  0  0
 14 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15  6  1  0  0  0  0
 15  7  1  0  0  0  0
 15  9  1  0  0  0  0
 15 13  1  0  0  0  0
 16 14  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035306

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(C)C1CCC(C)(C=C)C(C(C)=C)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O/c1-7-15(6)9-8-12(10(2)3)14(16)13(15)11(4)5/h7,10,12-13H,1,4,8-9H2,2-3,5-6H3

> <INCHI_KEY>
GWHRSRIPLDHJHR-UHFFFAOYSA-N

> <FORMULA>
C15H24O

> <MOLECULAR_WEIGHT>
220.3505

> <EXACT_MASS>
220.18271539

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
26.923577679478917

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-ethenyl-3-methyl-2-(prop-1-en-2-yl)-6-(propan-2-yl)cyclohexan-1-one

> <ALOGPS_LOGP>
4.26

> <JCHEM_LOGP>
4.417343428000001

> <ALOGPS_LOGS>
-4.67

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.831568352340117

> <JCHEM_PKA_STRONGEST_BASIC>
-7.578134465269898

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
69.1419

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.66e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-ethenyl-6-isopropyl-3-methyl-2-(prop-1-en-2-yl)cyclohexan-1-one

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0035306
     RDKit          3D
Epishyobunone
 40 40  0  0  0  0  0  0  0  0999 V2000
   -2.7113   -1.7296   -1.7409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6915   -1.2440   -0.5078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4307   -0.7737    0.1304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8491   -0.0277    1.3852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6154   -1.9673    0.4825 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8465   -1.7137    0.6448 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5301   -0.9325   -0.3980 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7585   -0.2841    0.2639 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5456    0.5501   -0.6860 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4455    0.3869    1.5547 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6518    0.0543   -1.0095 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1409    0.8673   -1.8309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7686    0.2102   -0.7733 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0542    1.6256   -0.3850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1360    2.5091   -0.0457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4843    2.1216   -0.3685 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5982   -2.0807   -2.2419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7746   -1.7742   -2.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6508   -1.2128    0.0026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9095    0.2412    1.3706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6723   -0.6986    2.2398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1777    0.8649    1.5433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7352   -2.7956   -0.2480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9729   -2.3804    1.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3818   -2.7141    0.6965 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0443   -1.2719    1.6433 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0006   -1.5995   -1.1981 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4102   -1.1747    0.5223 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6421    0.5250   -0.4418 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4410    0.1536   -1.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2359    1.6269   -0.6120 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8422   -0.1794    2.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4151    0.7061    1.6986 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0589    1.3371    1.5754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2477    0.1392   -1.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4312    3.5124    0.2214 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9017    2.2431   -0.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6691    2.5134    0.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1889    1.3725   -0.7252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5234    2.9943   -1.0731 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
  7 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  2  3
 14 16  1  0
 13  3  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  4 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  5 24  1  0
  6 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 10 34  1  0
 13 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 16 39  1  0
 16 40  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       0.870   4.937   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.324   3.490   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.344   3.490   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
CONECT    1    7                                                            
CONECT    2   10                                                            
CONECT    3   10                                                            
CONECT    4   11                                                            
CONECT    5   11                                                            
CONECT    6   15                                                            
CONECT    7    1   15                                                       
CONECT    8    9   12                                                       
CONECT    9    8   15                                                       
CONECT   10    2    3   12                                                  
CONECT   11    4    5   13                                                  
CONECT   12    8   10   14                                                  
CONECT   13   11   14   15                                                  
CONECT   14   12   13   16                                                  
CONECT   15    6    7    9   13                                             
CONECT   16   14                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

COMPND    HMDB0035306
HETATM    1  C1  UNL     1      -2.711  -1.730  -1.741  1.00  0.00           C  
HETATM    2  C2  UNL     1      -2.691  -1.244  -0.508  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.431  -0.774   0.130  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.849  -0.028   1.385  1.00  0.00           C  
HETATM    5  C5  UNL     1      -0.615  -1.967   0.482  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.847  -1.714   0.645  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.530  -0.933  -0.398  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.758  -0.284   0.264  1.00  0.00           C  
HETATM    9  C9  UNL     1       3.546   0.550  -0.686  1.00  0.00           C  
HETATM   10  C10 UNL     1       2.445   0.387   1.555  1.00  0.00           C  
HETATM   11  C11 UNL     1       0.652   0.054  -1.009  1.00  0.00           C  
HETATM   12  O1  UNL     1       1.141   0.867  -1.831  1.00  0.00           O  
HETATM   13  C12 UNL     1      -0.769   0.210  -0.773  1.00  0.00           C  
HETATM   14  C13 UNL     1      -1.054   1.626  -0.385  1.00  0.00           C  
HETATM   15  C14 UNL     1      -0.136   2.509  -0.046  1.00  0.00           C  
HETATM   16  C15 UNL     1      -2.484   2.122  -0.369  1.00  0.00           C  
HETATM   17  H1  UNL     1      -3.598  -2.081  -2.242  1.00  0.00           H  
HETATM   18  H2  UNL     1      -1.775  -1.774  -2.274  1.00  0.00           H  
HETATM   19  H3  UNL     1      -3.651  -1.213   0.003  1.00  0.00           H  
HETATM   20  H4  UNL     1      -2.910   0.241   1.371  1.00  0.00           H  
HETATM   21  H5  UNL     1      -1.672  -0.699   2.240  1.00  0.00           H  
HETATM   22  H6  UNL     1      -1.178   0.865   1.543  1.00  0.00           H  
HETATM   23  H7  UNL     1      -0.735  -2.796  -0.248  1.00  0.00           H  
HETATM   24  H8  UNL     1      -0.973  -2.380   1.451  1.00  0.00           H  
HETATM   25  H9  UNL     1       1.382  -2.714   0.697  1.00  0.00           H  
HETATM   26  H10 UNL     1       1.044  -1.272   1.643  1.00  0.00           H  
HETATM   27  H11 UNL     1       2.001  -1.600  -1.198  1.00  0.00           H  
HETATM   28  H12 UNL     1       3.410  -1.175   0.522  1.00  0.00           H  
HETATM   29  H13 UNL     1       4.642   0.525  -0.442  1.00  0.00           H  
HETATM   30  H14 UNL     1       3.441   0.154  -1.714  1.00  0.00           H  
HETATM   31  H15 UNL     1       3.236   1.627  -0.612  1.00  0.00           H  
HETATM   32  H16 UNL     1       2.842  -0.179   2.446  1.00  0.00           H  
HETATM   33  H17 UNL     1       1.415   0.706   1.699  1.00  0.00           H  
HETATM   34  H18 UNL     1       3.059   1.337   1.575  1.00  0.00           H  
HETATM   35  H19 UNL     1      -1.248   0.139  -1.809  1.00  0.00           H  
HETATM   36  H20 UNL     1      -0.431   3.512   0.221  1.00  0.00           H  
HETATM   37  H21 UNL     1       0.902   2.243  -0.031  1.00  0.00           H  
HETATM   38  H22 UNL     1      -2.669   2.513   0.641  1.00  0.00           H  
HETATM   39  H23 UNL     1      -3.189   1.373  -0.725  1.00  0.00           H  
HETATM   40  H24 UNL     1      -2.523   2.994  -1.073  1.00  0.00           H  
CONECT    1    2    2   17   18
CONECT    2    3   19
CONECT    3    4    5   13
CONECT    4   20   21   22
CONECT    5    6   23   24
CONECT    6    7   25   26
CONECT    7    8   11   27
CONECT    8    9   10   28
CONECT    9   29   30   31
CONECT   10   32   33   34
CONECT   11   12   12   13
CONECT   13   14   35
CONECT   14   15   15   16
CONECT   15   36   37
CONECT   16   38   39   40
END

HMDB0035306
     RDKit          3D
Epishyobunone
 40 40  0  0  0  0  0  0  0  0999 V2000
   -2.7113   -1.7296   -1.7409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6915   -1.2440   -0.5078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4307   -0.7737    0.1304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8491   -0.0277    1.3852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6154   -1.9673    0.4825 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8465   -1.7137    0.6448 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5301   -0.9325   -0.3980 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7585   -0.2841    0.2639 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5456    0.5501   -0.6860 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4455    0.3869    1.5547 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6518    0.0543   -1.0095 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1409    0.8673   -1.8309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7686    0.2102   -0.7733 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0542    1.6256   -0.3850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1360    2.5091   -0.0457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4843    2.1216   -0.3685 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5982   -2.0807   -2.2419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7746   -1.7742   -2.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6508   -1.2128    0.0026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9095    0.2412    1.3706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6723   -0.6986    2.2398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1777    0.8649    1.5433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7352   -2.7956   -0.2480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9729   -2.3804    1.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3818   -2.7141    0.6965 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0443   -1.2719    1.6433 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0006   -1.5995   -1.1981 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4102   -1.1747    0.5223 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6421    0.5250   -0.4418 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4410    0.1536   -1.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2359    1.6269   -0.6120 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8422   -0.1794    2.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4151    0.7061    1.6986 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0589    1.3371    1.5754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2477    0.1392   -1.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4312    3.5124    0.2214 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9017    2.2431   -0.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6691    2.5134    0.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1889    1.3725   -0.7252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5234    2.9943   -1.0731 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
  7 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  2  3
 14 16  1  0
 13  3  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  4 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  5 24  1  0
  6 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 10 34  1  0
 13 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 16 39  1  0
 16 40  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Epi-shyobunone	HMDB

Chemical Formula

C₁₅H₂₄O

Average Molecular Weight

220.3505

Monoisotopic Molecular Weight

220.18271539

IUPAC Name

3-ethenyl-3-methyl-2-(prop-1-en-2-yl)-6-(propan-2-yl)cyclohexan-1-one

Traditional Name

3-ethenyl-6-isopropyl-3-methyl-2-(prop-1-en-2-yl)cyclohexan-1-one

CAS Registry Number

39020-72-9

SMILES

CC(C)C1CCC(C)(C=C)C(C(C)=C)C1=O

InChI Identifier

InChI=1S/C15H24O/c1-7-15(6)9-8-12(10(2)3)14(16)13(15)11(4)5/h7,10,12-13H,1,4,8-9H2,2-3,5-6H3

InChI Key

GWHRSRIPLDHJHR-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as elemane sesquiterpenoids. These are sesquiterpenoids with a structure based on the elemane skeleton. Elemane is a monocyclic compound consisting of a cyclohexane ring substituted with a methyl group, an ethyl group, and two 1-methylethyl groups at the 1-, 1-, 2-, and 4-position, respectively.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Elemane sesquiterpenoids

Alternative Parents

Substituents

Elemane sesquiterpenoid
Cyclic ketone
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0035306)

Source

Exogenous

Food

Food (HMDB: HMDB0035306)

Herb and spice

Herbs and Spices (FooDB: FOOD00866)

Vegetable

Root vegetable

Root vegetables (FooDB: FOOD00873)

Exogenous (HMDB: HMDB0035306)

Endogenous

Plant

Plant (HMDB: HMDB0035306)

Animal

Animal (HMDB: HMDB0035306)

Endogenous (HMDB: HMDB0035306)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0035306)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0035306)

Lipid metabolism pathway (HMDB: HMDB0035306)

Cellular process

Cell signaling (HMDB: HMDB0035306)

Biochemical process

Lipid transport (HMDB: HMDB0035306)

Role

Biological role

Energy source (HMDB: HMDB0035306)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0035306)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	289.00 to 291.00 °C. @ 760.00 mm Hg	The Good Scents Company Information System
Water Solubility	1.85 mg/L @ 25 °C (est)	The Good Scents Company Information System
LogP	4.869 (est)	The Good Scents Company Information System

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.0047 g/L	ALOGPS
logP	4.26	ALOGPS
logP	4.42	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	18.83	ChemAxon
pKa (Strongest Basic)	-7.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	17.07 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	69.14 m³·mol⁻¹	ChemAxon
Polarizability	26.92 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	152.402	31661259
DarkChem	[M-H]-	148.454	31661259
DeepCCS	[M+H]+	155.203	30932474
DeepCCS	[M-H]-	152.845	30932474
DeepCCS	[M-2H]-	187.029	30932474
DeepCCS	[M+Na]+	162.859	30932474
AllCCS	[M+H]+	151.0	32859911
AllCCS	[M+H-H2O]+	147.3	32859911
AllCCS	[M+NH4]+	154.5	32859911
AllCCS	[M+Na]+	155.5	32859911
AllCCS	[M-H]-	159.1	32859911
AllCCS	[M+Na-2H]-	159.9	32859911
AllCCS	[M+HCOO]-	160.8	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	7.55 minutes	32390414
Predicted by Siyang on May 30, 2022	17.7713 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.28 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2616.0 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	584.8 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	210.8 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	297.1 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	193.6 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	685.0 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	880.4 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	74.4 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1402.5 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	533.7 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1518.6 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	414.8 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	415.0 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	363.0 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	509.9 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	7.9 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Epishyobunone	CC(C)C1CCC(C)(C=C)C(C(C)=C)C1=O	1859.8	Standard polar	33892256
Epishyobunone	CC(C)C1CCC(C)(C=C)C(C(C)=C)C1=O	1500.5	Standard non polar	33892256
Epishyobunone	CC(C)C1CCC(C)(C=C)C(C(C)=C)C1=O	1495.8	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Epishyobunone,1TMS,isomer #1	C=CC1(C)CCC(C(C)C)=C(O[Si](C)(C)C)C1C(=C)C	1585.3	Semi standard non polar	33892256
Epishyobunone,1TMS,isomer #1	C=CC1(C)CCC(C(C)C)=C(O[Si](C)(C)C)C1C(=C)C	1590.9	Standard non polar	33892256
Epishyobunone,1TMS,isomer #2	C=CC1(C)CCC(C(C)C)C(O[Si](C)(C)C)=C1C(=C)C	1593.0	Semi standard non polar	33892256
Epishyobunone,1TMS,isomer #2	C=CC1(C)CCC(C(C)C)C(O[Si](C)(C)C)=C1C(=C)C	1615.2	Standard non polar	33892256
Epishyobunone,1TBDMS,isomer #1	C=CC1(C)CCC(C(C)C)=C(O[Si](C)(C)C(C)(C)C)C1C(=C)C	1814.9	Semi standard non polar	33892256
Epishyobunone,1TBDMS,isomer #1	C=CC1(C)CCC(C(C)C)=C(O[Si](C)(C)C(C)(C)C)C1C(=C)C	1804.4	Standard non polar	33892256
Epishyobunone,1TBDMS,isomer #2	C=CC1(C)CCC(C(C)C)C(O[Si](C)(C)C(C)(C)C)=C1C(=C)C	1822.6	Semi standard non polar	33892256
Epishyobunone,1TBDMS,isomer #2	C=CC1(C)CCC(C(C)C)C(O[Si](C)(C)C(C)(C)C)=C1C(=C)C	1870.5	Standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Epishyobunone GC-MS (Non-derivatized) - 70eV, Positive	splash10-0pc0-9410000000-47baddddcebabd25711d	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Epishyobunone GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 10V, Positive-QTOF	splash10-00di-0390000000-e67371c5e37ca756e376	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 20V, Positive-QTOF	splash10-0adr-7930000000-756914a4b86869c655a5	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 40V, Positive-QTOF	splash10-0pb9-9200000000-9d10a9b639db043248a0	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 10V, Negative-QTOF	splash10-014i-0090000000-30460f87bb3aeedb1167	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 20V, Negative-QTOF	splash10-014i-0390000000-785d43269b05824b5b26	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 40V, Negative-QTOF	splash10-01u9-3920000000-2444b3d3fa6e6b4eb623	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 10V, Positive-QTOF	splash10-00di-0490000000-2acced60149d51d64808	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 20V, Positive-QTOF	splash10-00rl-5920000000-b779bba8e1d65ed5280b	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 40V, Positive-QTOF	splash10-05mx-9600000000-2d0693c4788b2f7c5cbf	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 10V, Negative-QTOF	splash10-014i-0090000000-4af4c4ee1c4acef7e18b	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 20V, Negative-QTOF	splash10-016r-0790000000-57b7b68504f8e6d39bf3	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Epishyobunone 40V, Negative-QTOF	splash10-01t9-1920000000-d0c1af37ba9a9d4abf48	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB013974

KNApSAcK ID

C00012003

Chemspider ID

514038

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

591309

PDB ID

Not Available

ChEBI ID

168444

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

rw1596061

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Epishyobunone (HMDB0035306)

MOL for HMDB0035306 (Epishyobunone)

3D MOL for HMDB0035306 (Epishyobunone)

3D SDF for HMDB0035306 (Epishyobunone)

3D-SDF for HMDB0035306 (Epishyobunone)

PDB for HMDB0035306 (Epishyobunone)

3D PDB for HMDB0035306 (Epishyobunone)

SMILES for HMDB0035306 (Epishyobunone)

INCHI for HMDB0035306 (Epishyobunone)

Structure for HMDB0035306 (Epishyobunone)

3D Structure for HMDB0035306 (Epishyobunone)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra