| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2012-09-11 20:22:48 UTC |
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| Update Date | 2022-03-07 02:54:29 UTC |
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| HMDB ID | HMDB0035400 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | 1-Tridecene-3,5,7,9,11-pentayne |
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| Description | 1-Tridecene-3,5,7,9,11-pentayne belongs to the class of organic compounds known as enynes. These are hydrocarbons containing an alkene and an alkyne group. Thus, 1-tridecene-3,5,7,9,11-pentayne is considered to be a hydrocarbon. 1-Tridecene-3,5,7,9,11-pentayne is found, on average, in the highest concentration within safflowers (Carthamus tinctorius). 1-Tridecene-3,5,7,9,11-pentayne has also been detected, but not quantified in, several different foods, such as herbal tea, herbs and spices, black tea, red tea, and fats and oils. This could make 1-tridecene-3,5,7,9,11-pentayne a potential biomarker for the consumption of these foods. 1-Tridecene-3,5,7,9,11-pentayne is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review a small amount of articles have been published on 1-Tridecene-3,5,7,9,11-pentayne. |
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| Structure | InChI=1S/C13H6/c1-3-5-7-9-11-13-12-10-8-6-4-2/h3H,1H2,2H3 |
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| Synonyms | | Value | Source |
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| 1-Tridecen-3,5,7,9,11-pentayne | ChEBI | | 1-Tridecene-3,5,7,9,11-pentyne | ChEBI | | Tridec-1-ene-3,5,7,9,11-pentayne | Kegg |
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| Chemical Formula | C13H6 |
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| Average Molecular Weight | 162.1867 |
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| Monoisotopic Molecular Weight | 162.046950192 |
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| IUPAC Name | tridec-1-en-3,5,7,9,11-pentayne |
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| Traditional Name | tridec-1-en-3,5,7,9,11-pentayne |
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| CAS Registry Number | 81900-91-6 |
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| SMILES | CC#CC#CC#CC#CC#CC=C |
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| InChI Identifier | InChI=1S/C13H6/c1-3-5-7-9-11-13-12-10-8-6-4-2/h3H,1H2,2H3 |
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| InChI Key | KKBHBCOJHHCOCL-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as enynes. These are hydrocarbons containing an alkene and an alkyne group. |
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| Kingdom | Organic compounds |
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| Super Class | Hydrocarbons |
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| Class | Unsaturated hydrocarbons |
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| Sub Class | Enynes |
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| Direct Parent | Enynes |
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| Alternative Parents | |
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| Substituents | - Enyne
- Unsaturated aliphatic hydrocarbon
- Olefin
- Acyclic olefin
- Acyclic acetylene
- Acetylene
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | 0.78 mg/L @ 25 °C (est) | The Good Scents Company Information System | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 7.86 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 20.4318 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 3.92 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 2853.1 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 792.3 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 315.6 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 585.5 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 418.6 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 908.5 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1162.5 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 785.7 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 1613.8 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 424.5 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1798.8 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 576.8 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 233.4 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 973.3 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 612.9 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 270.7 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatized| Metabolite | SMILES | Kovats RI Value | Column Type | Reference |
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| 1-Tridecene-3,5,7,9,11-pentayne | CC#CC#CC#CC#CC#CC=C | 2430.2 | Standard polar | 33892256 | | 1-Tridecene-3,5,7,9,11-pentayne | CC#CC#CC#CC#CC#CC=C | 1761.3 | Standard non polar | 33892256 | | 1-Tridecene-3,5,7,9,11-pentayne | CC#CC#CC#CC#CC#CC=C | 1775.8 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne GC-MS (Non-derivatized) - 70eV, Positive | splash10-03di-6900000000-486050adb6f79cbb999c | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 10V, Positive-QTOF | splash10-03di-0900000000-30928f373c61dfca2bdc | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 20V, Positive-QTOF | splash10-03di-2900000000-4b46be65697ce063ca70 | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 40V, Positive-QTOF | splash10-0fft-9400000000-161178cd004f084d6ffa | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 10V, Negative-QTOF | splash10-03di-0900000000-65f2b3cf57ff6e6dbe68 | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 20V, Negative-QTOF | splash10-03di-0900000000-2e074fa85da1876f8f30 | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 40V, Negative-QTOF | splash10-03dj-4900000000-95a2ad7d11f4e099742e | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 10V, Negative-QTOF | splash10-03di-0900000000-219c9fce0e9a7d0f991d | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 20V, Negative-QTOF | splash10-03di-0900000000-c72c7a5990f93dd0a1c1 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 40V, Negative-QTOF | splash10-01p9-0900000000-4566cd0e4b686c8d9b0c | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 10V, Positive-QTOF | splash10-03di-8900000000-9ef9e8fd2876cce28a29 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 20V, Positive-QTOF | splash10-000i-9300000000-80ce4e1db90ad45b40f4 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1-Tridecene-3,5,7,9,11-pentayne 40V, Positive-QTOF | splash10-00di-9600000000-ee61f683721e8c3bc472 | 2021-09-24 | Wishart Lab | View Spectrum |
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