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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 20:46:04 UTC

Update Date

2022-03-07 02:54:37 UTC

HMDB ID

HMDB0035748

Secondary Accession Numbers

HMDB35748

Metabolite Identification

Common Name

Sebiferenic acid

Description

Sebiferenic acid, also known as sebiferenate, belongs to the class of organic compounds known as scalarane sesterterpenoids. These are sesterterpenoids with a structure based on the scalarane backbone. Scalarane is a tetracyclic compound, which is similar the homoandrostane with five methyl groups at the 4-, 4-, 8-, 17-, 17a-positions. Based on a literature review a significant number of articles have been published on Sebiferenic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 05061308412D          

 34 38  0  0  0  0            999 V2000
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M  END

HMDB0035748
     RDKit          3D
Sebiferenic acid
 82 86  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv0541 05061308412D          

 34 38  0  0  0  0            999 V2000
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 22 17  1  0  0  0  0
 23 18  1  0  0  0  0
 25  1  1  0  0  0  0
 25  2  1  0  0  0  0
 25 14  1  0  0  0  0
 25 17  1  0  0  0  0
 26  3  1  0  0  0  0
 26  4  1  0  0  0  0
 26 19  1  0  0  0  0
 26 23  1  0  0  0  0
 27  5  1  0  0  0  0
 27 11  1  0  0  0  0
 27 20  1  0  0  0  0
 27 21  1  0  0  0  0
 28  6  1  0  0  0  0
 28 12  1  0  0  0  0
 28 20  1  0  0  0  0
 28 22  1  0  0  0  0
 29  7  1  0  0  0  0
 29 16  1  0  0  0  0
 29 19  1  0  0  0  0
 29 21  1  0  0  0  0
 30 13  1  0  0  0  0
 30 15  1  0  0  0  0
 30 22  1  0  0  0  0
 30 24  1  0  0  0  0
 31 18  1  0  0  0  0
 32 23  1  0  0  0  0
 33 24  2  0  0  0  0
 34 24  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035748

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1(C)CCC2(CC=C3C4(C)CCC5C(C)(C)C(O)C(O)CC5(C)C4CCC3(C)C2C1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C30H48O4/c1-25(2)14-15-30(24(33)34)13-10-20-27(5)11-8-19-26(3,4)23(32)18(31)16-29(19,7)21(27)9-12-28(20,6)22(30)17-25/h10,18-19,21-23,31-32H,8-9,11-17H2,1-7H3,(H,33,34)

> <INCHI_KEY>
JMJVYEINATYJHM-UHFFFAOYSA-N

> <FORMULA>
C30H48O4

> <MOLECULAR_WEIGHT>
472.6997

> <EXACT_MASS>
472.355260024

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
55.9466123033628

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
10,11-dihydroxy-2,2,6b,9,9,12a,14a-heptamethyl-1,2,3,4,4a,5,6b,7,8,8a,9,10,11,12,12a,12b,13,14,14a,14b-icosahydropicene-4a-carboxylic acid

> <ALOGPS_LOGP>
5.88

> <JCHEM_LOGP>
5.519929826333335

> <ALOGPS_LOGS>
-5.07

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.627313601899676

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.743995837439183

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1598163689737273

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
134.986

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.02e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
10,11-dihydroxy-2,2,6b,9,9,12a,14a-heptamethyl-1,3,4,5,7,8,8a,10,11,12,12b,13,14,14b-tetradecahydropicene-4a-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0035748
     RDKit          3D
Sebiferenic acid
 82 86  0  0  0  0  0  0  0  0999 V2000
   -5.9782    0.5931    2.0707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2999   -0.2138    0.9551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7957   -1.6400    1.1228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6149    0.3375   -0.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7249    1.5138   -0.6401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2520    1.1102   -0.7991 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9841    1.2019   -2.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1356    2.0099   -2.6822 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6745    0.3920   -3.1272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4595    2.0753    0.0188 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1541    1.5201    0.4816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7961    0.2785    0.4801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6980   -0.7494   -0.0018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8502   -2.0340    0.7465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0302   -1.1912   -1.3308 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4066   -1.6095   -0.9891 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1954   -0.4643   -0.4579 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5981   -0.0599    0.8885 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6456   -1.1668    1.9158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3522    1.0806    1.5156 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4068    1.6447    0.5527 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3353    0.5007    0.3066 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7308    0.8164   -0.0610 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9427    2.1031   -0.8064 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5198    0.9835    1.2548 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4077   -0.2962   -0.8265 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7568   -0.3480   -0.3879 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8316   -1.6445   -0.6642 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1436   -2.3766   -1.8376 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3679   -1.7778   -0.4067 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6371   -0.4633   -0.6363 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9418   -0.1316   -2.1119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0700   -0.2256   -0.1916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7799   -0.1556    1.1705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9261    0.1547    2.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1648    1.6367    1.7455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2862    0.6713    2.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9029   -1.5615    1.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5968   -2.2581    0.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3883   -2.0388    2.0712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6552    0.7363   -0.3540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5961   -0.4303   -1.1742 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1054    2.0585   -1.5204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8606    2.2091    0.2262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9592   -0.5574   -2.9348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9834    2.4779    0.8936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2416    2.9363   -0.6564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5267    2.3714    0.8263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3048   -2.9067    0.3233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8352   -1.9772    1.8441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9194   -2.3583    0.5260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8820   -0.3115   -1.9878 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5426   -2.0378   -1.7805 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4903   -2.5375   -0.4466 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8448   -1.8365   -2.0152 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8358    0.3979   -1.1345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6540   -1.1720    2.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0059   -0.8397    2.7517 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5354   -2.1716    1.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0463    0.6814    2.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7847    1.8245    2.0552 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8735    2.4921    1.0996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9642    2.0283   -0.3628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4016   -0.0906    1.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0457    2.7273   -0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6895    2.7917   -0.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4092    1.9545   -1.8241 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1164    1.9358    1.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5898    1.0761    1.0735 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2389    0.1768    1.9511 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5400    0.0308   -1.9017 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2680    0.4298   -0.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4004   -2.2013    0.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0054   -2.0687   -2.2227 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2019   -2.1799    0.5928 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8982   -2.5043   -1.1204 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4898   -0.9276   -2.6258 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3291    0.8821   -2.2416 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9564   -0.1009   -2.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6932   -1.0080   -0.7454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5645   -0.9844    1.8313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5906    0.7656    1.7151 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 23 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  1  0
 13 33  1  0
 33 34  1  0
 34  2  1  0
 33  6  1  0
 18 12  1  0
 31 22  1  0
 31 17  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  3 38  1  0
  3 39  1  0
  3 40  1  0
  4 41  1  0
  4 42  1  0
  5 43  1  0
  5 44  1  0
  9 45  1  0
 10 46  1  0
 10 47  1  0
 11 48  1  0
 14 49  1  0
 14 50  1  0
 14 51  1  0
 15 52  1  0
 15 53  1  0
 16 54  1  0
 16 55  1  0
 17 56  1  0
 19 57  1  0
 19 58  1  0
 19 59  1  0
 20 60  1  0
 20 61  1  0
 21 62  1  0
 21 63  1  0
 22 64  1  0
 24 65  1  0
 24 66  1  0
 24 67  1  0
 25 68  1  0
 25 69  1  0
 25 70  1  0
 26 71  1  0
 27 72  1  0
 28 73  1  0
 29 74  1  0
 30 75  1  0
 30 76  1  0
 32 77  1  0
 32 78  1  0
 32 79  1  0
 33 80  1  0
 34 81  1  0
 34 82  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -8.886   3.530   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.171   2.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.074   8.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.789   7.250   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.048   8.057   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.358   4.056   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.262   4.056   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.032   8.057   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.278   4.056   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.588   8.057   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.508   8.057   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.818   4.056   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.128   8.057   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -8.208   5.390   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -7.438   6.724   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.802   4.056   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.898   4.056   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.342   4.056   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.802   6.724   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -2.818   6.724   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.508   5.390   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.128   5.390   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.112   5.390   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -6.668   8.057   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -7.438   4.056   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.342   6.724   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.278   6.724   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -3.588   5.390   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.032   5.390   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -5.898   6.724   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.112   2.723   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       5.652   5.390   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      -8.208   8.057   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      -5.898   9.391   0.000  0.00  0.00           O+0
CONECT    1   25                                                            
CONECT    2   25                                                            
CONECT    3   26                                                            
CONECT    4   26                                                            
CONECT    5   27                                                            
CONECT    6   28                                                            
CONECT    7   29                                                            
CONECT    8   11   19                                                       
CONECT    9   12   21                                                       
CONECT   10   13   20                                                       
CONECT   11    8   27                                                       
CONECT   12    9   28                                                       
CONECT   13   10   30                                                       
CONECT   14   15   25                                                       
CONECT   15   14   30                                                       
CONECT   16   18   29                                                       
CONECT   17   22   25                                                       
CONECT   18   16   23   31                                                  
CONECT   19    8   26   29                                                  
CONECT   20   10   27   28                                                  
CONECT   21    9   27   29                                                  
CONECT   22   17   28   30                                                  
CONECT   23   18   26   32                                                  
CONECT   24   30   33   34                                                  
CONECT   25    1    2   14   17                                             
CONECT   26    3    4   19   23                                             
CONECT   27    5   11   20   21                                             
CONECT   28    6   12   20   22                                             
CONECT   29    7   16   19   21                                             
CONECT   30   13   15   22   24                                             
CONECT   31   18                                                            
CONECT   32   23                                                            
CONECT   33   24                                                            
CONECT   34   24                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   76    0
END

COMPND    HMDB0035748
HETATM    1  C1  UNL     1      -5.978   0.593   2.071  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.300  -0.214   0.955  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.796  -1.640   1.123  1.00  0.00           C  
HETATM    4  C4  UNL     1      -5.615   0.338  -0.392  1.00  0.00           C  
HETATM    5  C5  UNL     1      -4.725   1.514  -0.640  1.00  0.00           C  
HETATM    6  C6  UNL     1      -3.252   1.110  -0.799  1.00  0.00           C  
HETATM    7  C7  UNL     1      -2.984   1.202  -2.248  1.00  0.00           C  
HETATM    8  O1  UNL     1      -2.136   2.010  -2.682  1.00  0.00           O  
HETATM    9  O2  UNL     1      -3.675   0.392  -3.127  1.00  0.00           O  
HETATM   10  C8  UNL     1      -2.460   2.075   0.019  1.00  0.00           C  
HETATM   11  C9  UNL     1      -1.154   1.520   0.482  1.00  0.00           C  
HETATM   12  C10 UNL     1      -0.796   0.278   0.480  1.00  0.00           C  
HETATM   13  C11 UNL     1      -1.698  -0.749  -0.002  1.00  0.00           C  
HETATM   14  C12 UNL     1      -1.850  -2.034   0.747  1.00  0.00           C  
HETATM   15  C13 UNL     1      -1.030  -1.191  -1.331  1.00  0.00           C  
HETATM   16  C14 UNL     1       0.407  -1.609  -0.989  1.00  0.00           C  
HETATM   17  C15 UNL     1       1.195  -0.464  -0.458  1.00  0.00           C  
HETATM   18  C16 UNL     1       0.598  -0.060   0.889  1.00  0.00           C  
HETATM   19  C17 UNL     1       0.646  -1.167   1.916  1.00  0.00           C  
HETATM   20  C18 UNL     1       1.352   1.081   1.516  1.00  0.00           C  
HETATM   21  C19 UNL     1       2.407   1.645   0.553  1.00  0.00           C  
HETATM   22  C20 UNL     1       3.335   0.501   0.307  1.00  0.00           C  
HETATM   23  C21 UNL     1       4.731   0.816  -0.061  1.00  0.00           C  
HETATM   24  C22 UNL     1       4.943   2.103  -0.806  1.00  0.00           C  
HETATM   25  C23 UNL     1       5.520   0.983   1.255  1.00  0.00           C  
HETATM   26  C24 UNL     1       5.408  -0.296  -0.826  1.00  0.00           C  
HETATM   27  O3  UNL     1       6.757  -0.348  -0.388  1.00  0.00           O  
HETATM   28  C25 UNL     1       4.832  -1.644  -0.664  1.00  0.00           C  
HETATM   29  O4  UNL     1       5.144  -2.377  -1.838  1.00  0.00           O  
HETATM   30  C26 UNL     1       3.368  -1.778  -0.407  1.00  0.00           C  
HETATM   31  C27 UNL     1       2.637  -0.463  -0.636  1.00  0.00           C  
HETATM   32  C28 UNL     1       2.942  -0.132  -2.112  1.00  0.00           C  
HETATM   33  C29 UNL     1      -3.070  -0.226  -0.192  1.00  0.00           C  
HETATM   34  C30 UNL     1      -3.780  -0.156   1.170  1.00  0.00           C  
HETATM   35  H1  UNL     1      -6.926   0.155   2.381  1.00  0.00           H  
HETATM   36  H2  UNL     1      -6.165   1.637   1.745  1.00  0.00           H  
HETATM   37  H3  UNL     1      -5.286   0.671   2.948  1.00  0.00           H  
HETATM   38  H4  UNL     1      -6.903  -1.562   1.278  1.00  0.00           H  
HETATM   39  H5  UNL     1      -5.597  -2.258   0.245  1.00  0.00           H  
HETATM   40  H6  UNL     1      -5.388  -2.039   2.071  1.00  0.00           H  
HETATM   41  H7  UNL     1      -6.655   0.736  -0.354  1.00  0.00           H  
HETATM   42  H8  UNL     1      -5.596  -0.430  -1.174  1.00  0.00           H  
HETATM   43  H9  UNL     1      -5.105   2.059  -1.520  1.00  0.00           H  
HETATM   44  H10 UNL     1      -4.861   2.209   0.226  1.00  0.00           H  
HETATM   45  H11 UNL     1      -3.959  -0.557  -2.935  1.00  0.00           H  
HETATM   46  H12 UNL     1      -2.983   2.478   0.894  1.00  0.00           H  
HETATM   47  H13 UNL     1      -2.242   2.936  -0.656  1.00  0.00           H  
HETATM   48  H14 UNL     1      -0.527   2.371   0.826  1.00  0.00           H  
HETATM   49  H15 UNL     1      -1.305  -2.907   0.323  1.00  0.00           H  
HETATM   50  H16 UNL     1      -1.835  -1.977   1.844  1.00  0.00           H  
HETATM   51  H17 UNL     1      -2.919  -2.358   0.526  1.00  0.00           H  
HETATM   52  H18 UNL     1      -0.882  -0.312  -1.988  1.00  0.00           H  
HETATM   53  H19 UNL     1      -1.543  -2.038  -1.780  1.00  0.00           H  
HETATM   54  H20 UNL     1       0.490  -2.538  -0.447  1.00  0.00           H  
HETATM   55  H21 UNL     1       0.845  -1.837  -2.015  1.00  0.00           H  
HETATM   56  H22 UNL     1       0.836   0.398  -1.135  1.00  0.00           H  
HETATM   57  H23 UNL     1       1.654  -1.172   2.445  1.00  0.00           H  
HETATM   58  H24 UNL     1      -0.006  -0.840   2.752  1.00  0.00           H  
HETATM   59  H25 UNL     1       0.535  -2.172   1.557  1.00  0.00           H  
HETATM   60  H26 UNL     1       2.046   0.681   2.348  1.00  0.00           H  
HETATM   61  H27 UNL     1       0.785   1.824   2.055  1.00  0.00           H  
HETATM   62  H28 UNL     1       2.873   2.492   1.100  1.00  0.00           H  
HETATM   63  H29 UNL     1       1.964   2.028  -0.363  1.00  0.00           H  
HETATM   64  H30 UNL     1       3.402  -0.091   1.277  1.00  0.00           H  
HETATM   65  H31 UNL     1       4.046   2.727  -0.924  1.00  0.00           H  
HETATM   66  H32 UNL     1       5.689   2.792  -0.305  1.00  0.00           H  
HETATM   67  H33 UNL     1       5.409   1.954  -1.824  1.00  0.00           H  
HETATM   68  H34 UNL     1       5.116   1.936   1.701  1.00  0.00           H  
HETATM   69  H35 UNL     1       6.590   1.076   1.074  1.00  0.00           H  
HETATM   70  H36 UNL     1       5.239   0.177   1.951  1.00  0.00           H  
HETATM   71  H37 UNL     1       5.540   0.031  -1.902  1.00  0.00           H  
HETATM   72  H38 UNL     1       7.268   0.430  -0.739  1.00  0.00           H  
HETATM   73  H39 UNL     1       5.400  -2.201   0.140  1.00  0.00           H  
HETATM   74  H40 UNL     1       6.005  -2.069  -2.223  1.00  0.00           H  
HETATM   75  H41 UNL     1       3.202  -2.180   0.593  1.00  0.00           H  
HETATM   76  H42 UNL     1       2.898  -2.504  -1.120  1.00  0.00           H  
HETATM   77  H43 UNL     1       3.490  -0.928  -2.626  1.00  0.00           H  
HETATM   78  H44 UNL     1       3.329   0.882  -2.242  1.00  0.00           H  
HETATM   79  H45 UNL     1       1.956  -0.101  -2.680  1.00  0.00           H  
HETATM   80  H46 UNL     1      -3.693  -1.008  -0.745  1.00  0.00           H  
HETATM   81  H47 UNL     1      -3.565  -0.984   1.831  1.00  0.00           H  
HETATM   82  H48 UNL     1      -3.591   0.766   1.715  1.00  0.00           H  
CONECT    1    2   35   36   37
CONECT    2    3    4   34
CONECT    3   38   39   40
CONECT    4    5   41   42
CONECT    5    6   43   44
CONECT    6    7   10   33
CONECT    7    8    8    9
CONECT    9   45
CONECT   10   11   46   47
CONECT   11   12   12   48
CONECT   12   13   18
CONECT   13   14   15   33
CONECT   14   49   50   51
CONECT   15   16   52   53
CONECT   16   17   54   55
CONECT   17   18   31   56
CONECT   18   19   20
CONECT   19   57   58   59
CONECT   20   21   60   61
CONECT   21   22   62   63
CONECT   22   23   31   64
CONECT   23   24   25   26
CONECT   24   65   66   67
CONECT   25   68   69   70
CONECT   26   27   28   71
CONECT   27   72
CONECT   28   29   30   73
CONECT   29   74
CONECT   30   31   75   76
CONECT   31   32
CONECT   32   77   78   79
CONECT   33   34   80
CONECT   34   81   82
END

HMDB0035748
     RDKit          3D
Sebiferenic acid
 82 86  0  0  0  0  0  0  0  0999 V2000
   -5.9782    0.5931    2.0707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2999   -0.2138    0.9551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7957   -1.6400    1.1228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6149    0.3375   -0.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7249    1.5138   -0.6401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2520    1.1102   -0.7991 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9841    1.2019   -2.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1356    2.0099   -2.6822 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6745    0.3920   -3.1272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4595    2.0753    0.0188 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1541    1.5201    0.4816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7961    0.2785    0.4801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6980   -0.7494   -0.0018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8502   -2.0340    0.7465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0302   -1.1912   -1.3308 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4066   -1.6095   -0.9891 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1954   -0.4643   -0.4579 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5981   -0.0599    0.8885 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6456   -1.1668    1.9158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3522    1.0806    1.5156 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4068    1.6447    0.5527 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3353    0.5007    0.3066 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7308    0.8164   -0.0610 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9427    2.1031   -0.8064 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5198    0.9835    1.2548 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4077   -0.2962   -0.8265 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7568   -0.3480   -0.3879 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8316   -1.6445   -0.6642 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1436   -2.3766   -1.8376 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3679   -1.7778   -0.4067 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6371   -0.4633   -0.6363 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9418   -0.1316   -2.1119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0700   -0.2256   -0.1916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7799   -0.1556    1.1705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9261    0.1547    2.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1648    1.6367    1.7455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2862    0.6713    2.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9029   -1.5615    1.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5968   -2.2581    0.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3883   -2.0388    2.0712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6552    0.7363   -0.3540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5961   -0.4303   -1.1742 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1054    2.0585   -1.5204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8606    2.2091    0.2262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9592   -0.5574   -2.9348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9834    2.4779    0.8936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2416    2.9363   -0.6564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5267    2.3714    0.8263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3048   -2.9067    0.3233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8352   -1.9772    1.8441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9194   -2.3583    0.5260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8820   -0.3115   -1.9878 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5426   -2.0378   -1.7805 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4903   -2.5375   -0.4466 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8448   -1.8365   -2.0152 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8358    0.3979   -1.1345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6540   -1.1720    2.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0059   -0.8397    2.7517 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5354   -2.1716    1.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0463    0.6814    2.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7847    1.8245    2.0552 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8735    2.4921    1.0996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9642    2.0283   -0.3628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4016   -0.0906    1.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0457    2.7273   -0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6895    2.7917   -0.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4092    1.9545   -1.8241 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1164    1.9358    1.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5898    1.0761    1.0735 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2389    0.1768    1.9511 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5400    0.0308   -1.9017 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2680    0.4298   -0.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4004   -2.2013    0.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0054   -2.0687   -2.2227 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2019   -2.1799    0.5928 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8982   -2.5043   -1.1204 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4898   -0.9276   -2.6258 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3291    0.8821   -2.2416 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9564   -0.1009   -2.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6932   -1.0080   -0.7454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5645   -0.9844    1.8313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5906    0.7656    1.7151 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 23 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  1  0
 13 33  1  0
 33 34  1  0
 34  2  1  0
 33  6  1  0
 18 12  1  0
 31 22  1  0
 31 17  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  3 38  1  0
  3 39  1  0
  3 40  1  0
  4 41  1  0
  4 42  1  0
  5 43  1  0
  5 44  1  0
  9 45  1  0
 10 46  1  0
 10 47  1  0
 11 48  1  0
 14 49  1  0
 14 50  1  0
 14 51  1  0
 15 52  1  0
 15 53  1  0
 16 54  1  0
 16 55  1  0
 17 56  1  0
 19 57  1  0
 19 58  1  0
 19 59  1  0
 20 60  1  0
 20 61  1  0
 21 62  1  0
 21 63  1  0
 22 64  1  0
 24 65  1  0
 24 66  1  0
 24 67  1  0
 25 68  1  0
 25 69  1  0
 25 70  1  0
 26 71  1  0
 27 72  1  0
 28 73  1  0
 29 74  1  0
 30 75  1  0
 30 76  1  0
 32 77  1  0
 32 78  1  0
 32 79  1  0
 33 80  1  0
 34 81  1  0
 34 82  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Sebiferenate	Generator
2a-Hydroxyaleuritolic acid	HMDB
2a-Hydroxymaprounic acid	HMDB
10,11-Dihydroxy-2,2,6b,9,9,12a,14a-heptamethyl-1,2,3,4,4a,5,6b,7,8,8a,9,10,11,12,12a,12b,13,14,14a,14b-icosahydropicene-4a-carboxylate	Generator

Chemical Formula

C₃₀H₄₈O₄

Average Molecular Weight

472.6997

Monoisotopic Molecular Weight

472.355260024

IUPAC Name

10,11-dihydroxy-2,2,6b,9,9,12a,14a-heptamethyl-1,2,3,4,4a,5,6b,7,8,8a,9,10,11,12,12a,12b,13,14,14a,14b-icosahydropicene-4a-carboxylic acid

Traditional Name

10,11-dihydroxy-2,2,6b,9,9,12a,14a-heptamethyl-1,3,4,5,7,8,8a,10,11,12,12b,13,14,14b-tetradecahydropicene-4a-carboxylic acid

CAS Registry Number

94390-09-7

SMILES

CC1(C)CCC2(CC=C3C4(C)CCC5C(C)(C)C(O)C(O)CC5(C)C4CCC3(C)C2C1)C(O)=O

InChI Identifier

InChI=1S/C30H48O4/c1-25(2)14-15-30(24(33)34)13-10-20-27(5)11-8-19-26(3,4)23(32)18(31)16-29(19,7)21(27)9-12-28(20,6)22(30)17-25/h10,18-19,21-23,31-32H,8-9,11-17H2,1-7H3,(H,33,34)

InChI Key

JMJVYEINATYJHM-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as scalarane sesterterpenoids. These are sesterterpenoids with a structure based on the scalarane backbone. Scalarane is a tetracyclic compound, which is similar the homoandrostane with five methyl groups at the 4-, 4-, 8-, 17-, 17a-positions.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesterterpenoids

Direct Parent

Scalarane sesterterpenoids

Alternative Parents

Substituents

Scalarane sesterterpenoid
Cyclic alcohol
Secondary alcohol
1,2-diol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0035748)

Source

Endogenous

Endogenous (HMDB: HMDB0035748)

Animal

Animal (HMDB: HMDB0035748)

Exogenous

Food

Food (HMDB: HMDB0035748)

Fat and oil

Fats and oils (FooDB: FOOD00864)

Exogenous (HMDB: HMDB0035748)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0035748)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0035748)

Lipid metabolism pathway (HMDB: HMDB0035748)

Cellular process

Cell signaling (HMDB: HMDB0035748)

Biochemical process

Lipid transport (HMDB: HMDB0035748)

Role

Biological role

Energy source (HMDB: HMDB0035748)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0035748)

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	325 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	0.004 mg/L @ 25 °C (est)	The Good Scents Company Information System
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.004 g/L	ALOGPS
logP	5.88	ALOGPS
logP	5.52	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	4.74	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	134.99 m³·mol⁻¹	ChemAxon
Polarizability	55.95 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	206.077	31661259
DarkChem	[M-H]-	201.335	31661259
DeepCCS	[M+H]+	215.803	30932474
DeepCCS	[M-H]-	213.442	30932474
DeepCCS	[M-2H]-	246.327	30932474
DeepCCS	[M+Na]+	221.894	30932474
AllCCS	[M+H]+	218.4	32859911
AllCCS	[M+H-H2O]+	216.8	32859911
AllCCS	[M+NH4]+	219.8	32859911
AllCCS	[M+Na]+	220.3	32859911
AllCCS	[M-H]-	215.6	32859911
AllCCS	[M+Na-2H]-	217.7	32859911
AllCCS	[M+HCOO]-	220.1	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	9.57 minutes	32390414
Predicted by Siyang on May 30, 2022	19.7735 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.75 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3299.3 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	303.9 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	248.7 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	176.1 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	640.2 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	882.6 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	960.5 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	97.6 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1507.4 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	649.3 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1979.9 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	602.2 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	553.3 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	202.9 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	444.0 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.7 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Sebiferenic acid	CC1(C)CCC2(CC=C3C4(C)CCC5C(C)(C)C(O)C(O)CC5(C)C4CCC3(C)C2C1)C(O)=O	2987.2	Standard polar	33892256
Sebiferenic acid	CC1(C)CCC2(CC=C3C4(C)CCC5C(C)(C)C(O)C(O)CC5(C)C4CCC3(C)C2C1)C(O)=O	3593.2	Standard non polar	33892256
Sebiferenic acid	CC1(C)CCC2(CC=C3C4(C)CCC5C(C)(C)C(O)C(O)CC5(C)C4CCC3(C)C2C1)C(O)=O	3882.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Sebiferenic acid,1TMS,isomer #1	CC1(C)CCC2(C(=O)O)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C)C(O)CC43C)C2C1	3935.2	Semi standard non polar	33892256
Sebiferenic acid,1TMS,isomer #2	CC1(C)CCC2(C(=O)O)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O)C(O[Si](C)(C)C)CC43C)C2C1	3941.7	Semi standard non polar	33892256
Sebiferenic acid,1TMS,isomer #3	CC1(C)CCC2(C(=O)O[Si](C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O)C(O)CC43C)C2C1	3840.4	Semi standard non polar	33892256
Sebiferenic acid,2TMS,isomer #1	CC1(C)CCC2(C(=O)O[Si](C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C)C(O)CC43C)C2C1	3755.4	Semi standard non polar	33892256
Sebiferenic acid,2TMS,isomer #2	CC1(C)CCC2(C(=O)O)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)CC43C)C2C1	3916.2	Semi standard non polar	33892256
Sebiferenic acid,2TMS,isomer #3	CC1(C)CCC2(C(=O)O[Si](C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O)C(O[Si](C)(C)C)CC43C)C2C1	3759.8	Semi standard non polar	33892256
Sebiferenic acid,3TMS,isomer #1	CC1(C)CCC2(C(=O)O[Si](C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)CC43C)C2C1	3695.4	Semi standard non polar	33892256
Sebiferenic acid,1TBDMS,isomer #1	CC1(C)CCC2(C(=O)O)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C(C)(C)C)C(O)CC43C)C2C1	4147.4	Semi standard non polar	33892256
Sebiferenic acid,1TBDMS,isomer #2	CC1(C)CCC2(C(=O)O)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O)C(O[Si](C)(C)C(C)(C)C)CC43C)C2C1	4161.9	Semi standard non polar	33892256
Sebiferenic acid,1TBDMS,isomer #3	CC1(C)CCC2(C(=O)O[Si](C)(C)C(C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O)C(O)CC43C)C2C1	4080.9	Semi standard non polar	33892256
Sebiferenic acid,2TBDMS,isomer #1	CC1(C)CCC2(C(=O)O[Si](C)(C)C(C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C(C)(C)C)C(O)CC43C)C2C1	4193.9	Semi standard non polar	33892256
Sebiferenic acid,2TBDMS,isomer #2	CC1(C)CCC2(C(=O)O)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)CC43C)C2C1	4355.9	Semi standard non polar	33892256
Sebiferenic acid,2TBDMS,isomer #3	CC1(C)CCC2(C(=O)O[Si](C)(C)C(C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O)C(O[Si](C)(C)C(C)(C)C)CC43C)C2C1	4203.7	Semi standard non polar	33892256
Sebiferenic acid,3TBDMS,isomer #1	CC1(C)CCC2(C(=O)O[Si](C)(C)C(C)(C)C)CC=C3C(C)(CCC4C3(C)CCC3C(C)(C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)CC43C)C2C1	4355.9	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Sebiferenic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-0aor-0015900000-e4428aac708584647645	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Sebiferenic acid GC-MS (3 TMS) - 70eV, Positive	splash10-00di-1000029000-783149581e8ad250f2e3	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Sebiferenic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 10V, Positive-QTOF	splash10-0ab9-0000900000-d3966df9b42d9f17e2f1	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 20V, Positive-QTOF	splash10-0a4i-0100900000-bcf0d409c210ccfc274d	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 40V, Positive-QTOF	splash10-0a4i-3466900000-e227dce04a3054befd89	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 10V, Negative-QTOF	splash10-00di-0000900000-6ed93980da7f98eb7a16	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 20V, Negative-QTOF	splash10-05di-0000900000-57ecdbc0a40e25cb0358	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 40V, Negative-QTOF	splash10-0bt9-0000900000-acfd71c6de5fd68a5116	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 10V, Positive-QTOF	splash10-00di-0000900000-d033a7f37b12ad112a71	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 20V, Positive-QTOF	splash10-0ab9-0024900000-eb21ee1fbd42fedffcde	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 40V, Positive-QTOF	splash10-00di-2392200000-20440f0626655adc4329	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 10V, Negative-QTOF	splash10-00di-0000900000-ce83f241675374237da4	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 20V, Negative-QTOF	splash10-00di-0000900000-e8ebc97bac06940335ca	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Sebiferenic acid 40V, Negative-QTOF	splash10-00di-0000900000-d590b76896839b829215	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB014478

KNApSAcK ID

C00057674

Chemspider ID

35014012

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

75049017

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

rw1851391

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Sebiferenic acid (HMDB0035748)

MOL for HMDB0035748 (Sebiferenic acid)

3D MOL for HMDB0035748 (Sebiferenic acid)

3D SDF for HMDB0035748 (Sebiferenic acid)

3D-SDF for HMDB0035748 (Sebiferenic acid)

PDB for HMDB0035748 (Sebiferenic acid)

3D PDB for HMDB0035748 (Sebiferenic acid)

SMILES for HMDB0035748 (Sebiferenic acid)

INCHI for HMDB0035748 (Sebiferenic acid)

Structure for HMDB0035748 (Sebiferenic acid)

3D Structure for HMDB0035748 (Sebiferenic acid)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra