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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 21:09:46 UTC
Update Date2022-03-07 02:54:47 UTC
HMDB IDHMDB0036095
Secondary Accession Numbers
  • HMDB36095
Metabolite Identification
Common Name13-Hydroxyabscisic acid
Description13-Hydroxyabscisic acid belongs to the class of organic compounds known as abscisic acids and derivatives. These are terpene compounds containing the abscisic acid moiety, which is characterized by a 3-methylpenta-2,4-dienoic acid attached to the C1 carbon of a 4-oxocyclohex-2-ene moiety. Based on a literature review a small amount of articles have been published on 13-Hydroxyabscisic acid.
Structure
Data?1563862820
Synonyms
ValueSource
13-HydroxyabscisateGenerator
5-[1-Hydroxy-6-(hydroxymethyl)-2,6-dimethyl-4-oxo-2-cyclohexen-1-yl]-3-methyl-2,4-pentadienoic acidHMDB
(2E,4E)-5-[1-Hydroxy-6-(hydroxymethyl)-2,6-dimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoateGenerator
Chemical FormulaC15H20O5
Average Molecular Weight280.3163
Monoisotopic Molecular Weight280.13107375
IUPAC Name(2E,4E)-5-[1-hydroxy-6-(hydroxymethyl)-2,6-dimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
Traditional Name(2E,4E)-5-[1-hydroxy-6-(hydroxymethyl)-2,6-dimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
CAS Registry Number25841-53-6
SMILES
C\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)CO)=C/C(O)=O
InChI Identifier
InChI=1S/C15H20O5/c1-10(6-13(18)19)4-5-15(20)11(2)7-12(17)8-14(15,3)9-16/h4-7,16,20H,8-9H2,1-3H3,(H,18,19)/b5-4+,10-6+
InChI KeyAVFORCKFTWHFAR-UMCKCUICSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as abscisic acids and derivatives. These are terpene compounds containing the abscisic acid moiety, which is characterized by a 3-methylpenta-2,4-dienoic acid attached to the C1 carbon of a 4-oxocyclohex-2-ene moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentAbscisic acids and derivatives
Alternative Parents
Substituents
  • Abscisic acid
  • Medium-chain fatty acid
  • Branched fatty acid
  • Cyclohexenone
  • Hydroxy fatty acid
  • Methyl-branched fatty acid
  • Fatty acyl
  • Fatty acid
  • Unsaturated fatty acid
  • Tertiary alcohol
  • Cyclic ketone
  • Ketone
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Hydrocarbon derivative
  • Alcohol
  • Organic oxygen compound
  • Carbonyl group
  • Organic oxide
  • Primary alcohol
  • Organooxygen compound
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.29 g/LALOGPS
logP0.72ALOGPS
logP0.81ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)4.6ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area94.83 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity76.75 m³·mol⁻¹ChemAxon
Polarizability29.27 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+183.74330932474
DeepCCS[M-H]-181.38530932474
DeepCCS[M-2H]-214.27130932474
DeepCCS[M+Na]+189.83630932474
AllCCS[M+H]+165.632859911
AllCCS[M+H-H2O]+162.232859911
AllCCS[M+NH4]+168.832859911
AllCCS[M+Na]+169.732859911
AllCCS[M-H]-167.932859911
AllCCS[M+Na-2H]-168.332859911
AllCCS[M+HCOO]-168.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.35 minutes32390414
Predicted by Siyang on May 30, 202210.1607 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.71 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1645.0 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid202.2 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid104.6 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid156.0 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid50.9 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid304.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid323.3 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)72.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid694.8 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid267.9 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1012.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid216.4 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid247.3 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate353.1 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA187.0 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water54.5 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
13-Hydroxyabscisic acidC\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)CO)=C/C(O)=O4207.9Standard polar33892256
13-Hydroxyabscisic acidC\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)CO)=C/C(O)=O2177.6Standard non polar33892256
13-Hydroxyabscisic acidC\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)CO)=C/C(O)=O2509.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
13-Hydroxyabscisic acid,1TMS,isomer #1CC1=CC(=O)CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C2554.6Semi standard non polar33892256
13-Hydroxyabscisic acid,1TMS,isomer #2CC1=CC(=O)CC(C)(CO[Si](C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O2519.5Semi standard non polar33892256
13-Hydroxyabscisic acid,1TMS,isomer #3CC1=CC(=O)CC(C)(CO)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C2547.5Semi standard non polar33892256
13-Hydroxyabscisic acid,1TMS,isomer #4CC1=CC(O[Si](C)(C)C)=CC(C)(CO)C1(O)/C=C/C(C)=C/C(=O)O2544.6Semi standard non polar33892256
13-Hydroxyabscisic acid,2TMS,isomer #1CC1=CC(=O)CC(C)(CO[Si](C)(C)C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C2527.8Semi standard non polar33892256
13-Hydroxyabscisic acid,2TMS,isomer #2CC1=CC(=O)CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2554.2Semi standard non polar33892256
13-Hydroxyabscisic acid,2TMS,isomer #3CC1=CC(O[Si](C)(C)C)=CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C2536.3Semi standard non polar33892256
13-Hydroxyabscisic acid,2TMS,isomer #4CC1=CC(=O)CC(C)(CO[Si](C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C2506.7Semi standard non polar33892256
13-Hydroxyabscisic acid,2TMS,isomer #5CC1=CC(O[Si](C)(C)C)=CC(C)(CO[Si](C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O2454.8Semi standard non polar33892256
13-Hydroxyabscisic acid,2TMS,isomer #6CC1=CC(O[Si](C)(C)C)=CC(C)(CO)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C2531.2Semi standard non polar33892256
13-Hydroxyabscisic acid,3TMS,isomer #1CC1=CC(=O)CC(C)(CO[Si](C)(C)C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2515.9Semi standard non polar33892256
13-Hydroxyabscisic acid,3TMS,isomer #2CC1=CC(O[Si](C)(C)C)=CC(C)(CO[Si](C)(C)C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C2450.4Semi standard non polar33892256
13-Hydroxyabscisic acid,3TMS,isomer #3CC1=CC(O[Si](C)(C)C)=CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2522.5Semi standard non polar33892256
13-Hydroxyabscisic acid,3TMS,isomer #4CC1=CC(O[Si](C)(C)C)=CC(C)(CO[Si](C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C2436.1Semi standard non polar33892256
13-Hydroxyabscisic acid,4TMS,isomer #1CC1=CC(O[Si](C)(C)C)=CC(C)(CO[Si](C)(C)C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2426.4Semi standard non polar33892256
13-Hydroxyabscisic acid,4TMS,isomer #1CC1=CC(O[Si](C)(C)C)=CC(C)(CO[Si](C)(C)C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2473.7Standard non polar33892256
13-Hydroxyabscisic acid,1TBDMS,isomer #1CC1=CC(=O)CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C(C)(C)C2799.8Semi standard non polar33892256
13-Hydroxyabscisic acid,1TBDMS,isomer #2CC1=CC(=O)CC(C)(CO[Si](C)(C)C(C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O2773.8Semi standard non polar33892256
13-Hydroxyabscisic acid,1TBDMS,isomer #3CC1=CC(=O)CC(C)(CO)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C2797.8Semi standard non polar33892256
13-Hydroxyabscisic acid,1TBDMS,isomer #4CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO)C1(O)/C=C/C(C)=C/C(=O)O2785.1Semi standard non polar33892256
13-Hydroxyabscisic acid,2TBDMS,isomer #1CC1=CC(=O)CC(C)(CO[Si](C)(C)C(C)(C)C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C(C)(C)C3019.6Semi standard non polar33892256
13-Hydroxyabscisic acid,2TBDMS,isomer #2CC1=CC(=O)CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3021.2Semi standard non polar33892256
13-Hydroxyabscisic acid,2TBDMS,isomer #3CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C(C)(C)C3010.0Semi standard non polar33892256
13-Hydroxyabscisic acid,2TBDMS,isomer #4CC1=CC(=O)CC(C)(CO[Si](C)(C)C(C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C3027.4Semi standard non polar33892256
13-Hydroxyabscisic acid,2TBDMS,isomer #5CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO[Si](C)(C)C(C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O2959.1Semi standard non polar33892256
13-Hydroxyabscisic acid,2TBDMS,isomer #6CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C3004.6Semi standard non polar33892256
13-Hydroxyabscisic acid,3TBDMS,isomer #1CC1=CC(=O)CC(C)(CO[Si](C)(C)C(C)(C)C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3238.7Semi standard non polar33892256
13-Hydroxyabscisic acid,3TBDMS,isomer #2CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO[Si](C)(C)C(C)(C)C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C(C)(C)C3186.9Semi standard non polar33892256
13-Hydroxyabscisic acid,3TBDMS,isomer #3CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3207.8Semi standard non polar33892256
13-Hydroxyabscisic acid,3TBDMS,isomer #4CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO[Si](C)(C)C(C)(C)C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C3154.6Semi standard non polar33892256
13-Hydroxyabscisic acid,4TBDMS,isomer #1CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO[Si](C)(C)C(C)(C)C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3375.2Semi standard non polar33892256
13-Hydroxyabscisic acid,4TBDMS,isomer #1CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(CO[Si](C)(C)C(C)(C)C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3225.1Standard non polar33892256
Spectra
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014935
KNApSAcK IDC00011541
Chemspider ID35014094
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131751914
PDB IDNot Available
ChEBI ID143236
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.