Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:02:26 UTC
Update Date2022-03-07 02:55:30 UTC
HMDB IDHMDB0037781
Secondary Accession Numbers
  • HMDB37781
Metabolite Identification
Common NameGanoderiol C
DescriptionGanoderiol C belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Based on a literature review a significant number of articles have been published on Ganoderiol C.
Structure
Data?1563863087
Synonyms
ValueSource
7a-Ethoxy-24,25,26-trihydroxy-8-lanosten-3-oneHMDB
Chemical FormulaC32H54O5
Average Molecular Weight518.7682
Monoisotopic Molecular Weight518.397124838
IUPAC Name9-ethoxy-2,6,6,11,15-pentamethyl-14-(5,6,7-trihydroxy-6-methylheptan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-5-one
Traditional Name9-ethoxy-2,6,6,11,15-pentamethyl-14-(5,6,7-trihydroxy-6-methylheptan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-5-one
CAS Registry Number114567-44-1
SMILES
CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO)C1(C)CC2
InChI Identifier
InChI=1S/C32H54O5/c1-9-37-23-18-24-28(3,4)25(34)14-15-29(24,5)22-13-16-30(6)21(12-17-31(30,7)27(22)23)20(2)10-11-26(35)32(8,36)19-33/h20-21,23-24,26,33,35-36H,9-19H2,1-8H3
InChI KeyNBPAZLNDCXUMSM-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentTriterpenoids
Alternative Parents
Substituents
  • Triterpenoid
  • 26-hydroxysteroid
  • Trihydroxy bile acid, alcohol, or derivatives
  • 25-hydroxysteroid
  • 24-hydroxysteroid
  • Hydroxy bile acid, alcohol, or derivatives
  • Bile acid, alcohol, or derivatives
  • 3-oxosteroid
  • Oxosteroid
  • Steroid
  • Fatty alcohol
  • Fatty acyl
  • Tertiary alcohol
  • Cyclic ketone
  • Secondary alcohol
  • Ketone
  • Dialkyl ether
  • Ether
  • Polyol
  • Hydrocarbon derivative
  • Alcohol
  • Organic oxygen compound
  • Carbonyl group
  • Organic oxide
  • Primary alcohol
  • Organooxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0029 g/LALOGPS
logP5.59ALOGPS
logP4.85ChemAxon
logS-5.2ALOGPS
pKa (Strongest Acidic)13.19ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area86.99 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity148.63 m³·mol⁻¹ChemAxon
Polarizability62.18 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+217.71631661259
DarkChem[M-H]-212.21831661259
DeepCCS[M+H]+228.39730932474
DeepCCS[M-H]-226.00230932474
DeepCCS[M-2H]-258.88630932474
DeepCCS[M+Na]+234.3130932474
AllCCS[M+H]+225.532859911
AllCCS[M+H-H2O]+224.132859911
AllCCS[M+NH4]+226.732859911
AllCCS[M+Na]+227.132859911
AllCCS[M-H]-218.832859911
AllCCS[M+Na-2H]-222.232859911
AllCCS[M+HCOO]-226.132859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.8.65 minutes32390414
Predicted by Siyang on May 30, 202218.3053 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.02 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid62.5 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3233.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid239.5 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid253.8 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid164.0 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid382.3 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid910.9 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid920.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)105.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1510.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid616.5 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1745.2 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid586.9 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid511.6 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate159.7 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA495.6 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.8 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Ganoderiol CCCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO)C1(C)CC23119.3Standard polar33892256
Ganoderiol CCCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO)C1(C)CC23776.5Standard non polar33892256
Ganoderiol CCCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO)C1(C)CC24002.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ganoderiol C,1TMS,isomer #1CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(O)CO)C1(C)CC24070.2Semi standard non polar33892256
Ganoderiol C,1TMS,isomer #2CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO)O[Si](C)(C)C)C1(C)CC24083.2Semi standard non polar33892256
Ganoderiol C,1TMS,isomer #3CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO[Si](C)(C)C)C1(C)CC24062.2Semi standard non polar33892256
Ganoderiol C,1TMS,isomer #4CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO)C1(C)CC23958.7Semi standard non polar33892256
Ganoderiol C,2TMS,isomer #1CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(CO)O[Si](C)(C)C)C1(C)CC24052.5Semi standard non polar33892256
Ganoderiol C,2TMS,isomer #2CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(O)CO[Si](C)(C)C)C1(C)CC24029.6Semi standard non polar33892256
Ganoderiol C,2TMS,isomer #3CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(O)CO)C1(C)CC23901.5Semi standard non polar33892256
Ganoderiol C,2TMS,isomer #4CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO[Si](C)(C)C)O[Si](C)(C)C)C1(C)CC24069.9Semi standard non polar33892256
Ganoderiol C,2TMS,isomer #5CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO)O[Si](C)(C)C)C1(C)CC23919.8Semi standard non polar33892256
Ganoderiol C,2TMS,isomer #6CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO[Si](C)(C)C)C1(C)CC23888.6Semi standard non polar33892256
Ganoderiol C,3TMS,isomer #1CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(CO[Si](C)(C)C)O[Si](C)(C)C)C1(C)CC24079.0Semi standard non polar33892256
Ganoderiol C,3TMS,isomer #2CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(CO)O[Si](C)(C)C)C1(C)CC23908.9Semi standard non polar33892256
Ganoderiol C,3TMS,isomer #3CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(O)CO[Si](C)(C)C)C1(C)CC23875.0Semi standard non polar33892256
Ganoderiol C,3TMS,isomer #4CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO[Si](C)(C)C)O[Si](C)(C)C)C1(C)CC23931.1Semi standard non polar33892256
Ganoderiol C,4TMS,isomer #1CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(CO[Si](C)(C)C)O[Si](C)(C)C)C1(C)CC23924.0Semi standard non polar33892256
Ganoderiol C,4TMS,isomer #1CCOC1CC2C(C)(C)C(O[Si](C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C)C(C)(CO[Si](C)(C)C)O[Si](C)(C)C)C1(C)CC23722.2Standard non polar33892256
Ganoderiol C,1TBDMS,isomer #1CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C(C)(C)C)C(C)(O)CO)C1(C)CC24286.3Semi standard non polar33892256
Ganoderiol C,1TBDMS,isomer #2CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO)O[Si](C)(C)C(C)(C)C)C1(C)CC24303.4Semi standard non polar33892256
Ganoderiol C,1TBDMS,isomer #3CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO[Si](C)(C)C(C)(C)C)C1(C)CC24275.1Semi standard non polar33892256
Ganoderiol C,1TBDMS,isomer #4CCOC1CC2C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO)C1(C)CC24163.0Semi standard non polar33892256
Ganoderiol C,2TBDMS,isomer #1CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C(C)(C)C)C(C)(CO)O[Si](C)(C)C(C)(C)C)C1(C)CC24489.6Semi standard non polar33892256
Ganoderiol C,2TBDMS,isomer #2CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C(C)(C)C)C(C)(O)CO[Si](C)(C)C(C)(C)C)C1(C)CC24472.3Semi standard non polar33892256
Ganoderiol C,2TBDMS,isomer #3CCOC1CC2C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C(C)(C)C)C(C)(O)CO)C1(C)CC24332.5Semi standard non polar33892256
Ganoderiol C,2TBDMS,isomer #4CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C1(C)CC24501.0Semi standard non polar33892256
Ganoderiol C,2TBDMS,isomer #5CCOC1CC2C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO)O[Si](C)(C)C(C)(C)C)C1(C)CC24356.3Semi standard non polar33892256
Ganoderiol C,2TBDMS,isomer #6CCOC1CC2C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(O)CO[Si](C)(C)C(C)(C)C)C1(C)CC24316.5Semi standard non polar33892256
Ganoderiol C,3TBDMS,isomer #1CCOC1CC2C(C)(C)C(=O)CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C(C)(C)C)C(C)(CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C1(C)CC24739.4Semi standard non polar33892256
Ganoderiol C,3TBDMS,isomer #2CCOC1CC2C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C(C)(C)C)C(C)(CO)O[Si](C)(C)C(C)(C)C)C1(C)CC24571.9Semi standard non polar33892256
Ganoderiol C,3TBDMS,isomer #3CCOC1CC2C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O[Si](C)(C)C(C)(C)C)C(C)(O)CO[Si](C)(C)C(C)(C)C)C1(C)CC24548.3Semi standard non polar33892256
Ganoderiol C,3TBDMS,isomer #4CCOC1CC2C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC2(C)C2=C1C1(C)CCC(C(C)CCC(O)C(C)(CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C1(C)CC24590.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderiol C GC-MS (Non-derivatized) - 70eV, Positivesplash10-0fbi-8001940000-28433b8e79a934ef7eca2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderiol C GC-MS (2 TMS) - 70eV, Positivesplash10-00kb-1001019000-ce687a869b5b9e1e5cb22017-10-06Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 10V, Positive-QTOFsplash10-0gb9-1001690000-3fb7f2769e4653d2b8982016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 20V, Positive-QTOFsplash10-0gx0-4102930000-bb7849bac7be84f15b372016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 40V, Positive-QTOFsplash10-0a4i-4109810000-ff3f024362a600a9d9852016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 10V, Negative-QTOFsplash10-014i-3000790000-1172cb1b1c7285f4aea52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 20V, Negative-QTOFsplash10-00n3-3000910000-fe20afacc84ac86dcfd52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 40V, Negative-QTOFsplash10-0ab9-6200900000-9289c9c33d10fd240f8f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 10V, Negative-QTOFsplash10-014i-0000090000-ace6a872d31c696be50f2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 20V, Negative-QTOFsplash10-014i-5200980000-7060eb81dee3341880792021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 40V, Negative-QTOFsplash10-0aor-9101720000-99a51599191539753a532021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 10V, Positive-QTOFsplash10-000x-0901750000-0fb9ded75161f1d3fb752021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 20V, Positive-QTOFsplash10-0a4u-7911820000-f7c9515896a2be3761162021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderiol C 40V, Positive-QTOFsplash10-0006-9116000000-e4f0841c3f4d0659829a2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB016923
KNApSAcK IDC00023859
Chemspider ID78444032
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15602259
PDB IDNot Available
ChEBI ID172728
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1863571
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.