Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:10:14 UTC
Update Date2022-03-07 02:55:33 UTC
HMDB IDHMDB0037914
Secondary Accession Numbers
  • HMDB37914
Metabolite Identification
Common Name(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol
Description(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol belongs to the class of organic compounds known as ergosterols and derivatives. These are steroids containing ergosta-5,7,22-trien-3beta-ol or a derivative thereof, which is based on the 3beta-hydroxylated ergostane skeleton. Based on a literature review a small amount of articles have been published on (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol.
Structure
Data?1563863108
Synonyms
ValueSource
(2b,3a,9a,24R)-Ergosta-7,22-diene-2,3,9-triolGenerator
(2Β,3α,9α,24R)-ergosta-7,22-diene-2,3,9-triolGenerator
Chemical FormulaC28H46O3
Average Molecular Weight430.663
Monoisotopic Molecular Weight430.344695338
IUPAC Name(1S,2S,4S,5S,14R,15R)-14-[(2R,3E,5R)-5,6-dimethylhept-3-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-9-ene-1,4,5-triol
Traditional Name(1S,2S,4S,5S,14R,15R)-14-[(2R,3E,5R)-5,6-dimethylhept-3-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-9-ene-1,4,5-triol
CAS Registry NumberNot Available
SMILES
CC(C)[C@@H](C)\C=C\[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O)C[C@]4(C)[C@@]3(O)CC[C@]12C
InChI Identifier
InChI=1S/C28H46O3/c1-17(2)18(3)7-8-19(4)21-11-12-22-23-10-9-20-15-24(29)25(30)16-27(20,6)28(23,31)14-13-26(21,22)5/h7-8,10,17-22,24-25,29-31H,9,11-16H2,1-6H3/b8-7+/t18-,19+,20?,21+,22?,24-,25-,26+,27-,28+/m0/s1
InChI KeyRVWGLBNUTMYAOL-LJJGXUKZSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as ergosterols and derivatives. These are steroids containing ergosta-5,7,22-trien-3beta-ol or a derivative thereof, which is based on the 3beta-hydroxylated ergostane skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassErgostane steroids
Direct ParentErgosterols and derivatives
Alternative Parents
Substituents
  • Ergosterol-skeleton
  • 3-hydroxy-delta-7-steroid
  • 3-hydroxysteroid
  • 3-alpha-hydroxysteroid
  • 2-hydroxysteroid
  • Hydroxysteroid
  • Delta-7-steroid
  • Cyclic alcohol
  • Tertiary alcohol
  • Secondary alcohol
  • Polyol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Alcohol
  • Organooxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point253 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0062 g/LALOGPS
logP5.04ALOGPS
logP4.96ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)13.56ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area60.69 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity129.02 m³·mol⁻¹ChemAxon
Polarizability52.82 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+203.09231661259
DarkChem[M-H]-199.54931661259
DeepCCS[M-2H]-237.5830932474
DeepCCS[M+Na]+211.98230932474
AllCCS[M+H]+210.432859911
AllCCS[M+H-H2O]+208.432859911
AllCCS[M+NH4]+212.232859911
AllCCS[M+Na]+212.732859911
AllCCS[M-H]-208.332859911
AllCCS[M+Na-2H]-210.432859911
AllCCS[M+HCOO]-213.032859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. 7.79 minutes32390414
Predicted by Siyang on May 30, 202218.5192 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.65 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid46.0 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3417.2 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid312.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid228.4 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid169.4 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid334.8 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid935.5 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid854.3 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)88.5 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1463.4 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid635.7 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1792.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid521.9 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid513.7 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate163.8 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA381.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.7 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triolCC(C)[C@@H](C)\C=C\[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O)C[C@]4(C)[C@@]3(O)CC[C@]12C3409.7Standard polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triolCC(C)[C@@H](C)\C=C\[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O)C[C@]4(C)[C@@]3(O)CC[C@]12C3380.1Standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triolCC(C)[C@@H](C)\C=C\[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O)C[C@]4(C)[C@@]3(O)CC[C@]12C3581.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,1TMS,isomer #1CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C)[C@@H](O)C[C@]4(C)[C@@]3(O)CC[C@@]21C3595.8Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,1TMS,isomer #2CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O[Si](C)(C)C)C[C@]4(C)[C@@]3(O)CC[C@@]21C3598.5Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,1TMS,isomer #3CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O)C[C@]4(C)[C@@]3(O[Si](C)(C)C)CC[C@@]21C3563.1Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,2TMS,isomer #1CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)C[C@]4(C)[C@@]3(O)CC[C@@]21C3593.7Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,2TMS,isomer #2CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C)[C@@H](O)C[C@]4(C)[C@@]3(O[Si](C)(C)C)CC[C@@]21C3496.1Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,2TMS,isomer #3CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O[Si](C)(C)C)C[C@]4(C)[C@@]3(O[Si](C)(C)C)CC[C@@]21C3502.0Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,3TMS,isomer #1CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)C[C@]4(C)[C@@]3(O[Si](C)(C)C)CC[C@@]21C3467.6Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,1TBDMS,isomer #1CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)C[C@]4(C)[C@@]3(O)CC[C@@]21C3822.9Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,1TBDMS,isomer #2CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)C[C@]4(C)[C@@]3(O)CC[C@@]21C3832.9Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,1TBDMS,isomer #3CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O)C[C@]4(C)[C@@]3(O[Si](C)(C)C(C)(C)C)CC[C@@]21C3780.6Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,2TBDMS,isomer #1CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)C[C@]4(C)[C@@]3(O)CC[C@@]21C4013.4Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,2TBDMS,isomer #2CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)C[C@]4(C)[C@@]3(O[Si](C)(C)C(C)(C)C)CC[C@@]21C3921.3Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,2TBDMS,isomer #3CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)C[C@]4(C)[C@@]3(O[Si](C)(C)C(C)(C)C)CC[C@@]21C3927.2Semi standard non polar33892256
(2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol,3TBDMS,isomer #1CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CCC2C3=CCC4C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)C[C@]4(C)[C@@]3(O[Si](C)(C)C(C)(C)C)CC[C@@]21C4080.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol GC-MS (Non-derivatized) - 70eV, Positivesplash10-0wmu-2137900000-6f72ba878b3c700891842017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol GC-MS (3 TMS) - 70eV, Positivesplash10-001i-2000029000-b662171be23bf1c4368a2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 10V, Positive-QTOFsplash10-03ea-1005900000-f9a75e558620cdec42862016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 20V, Positive-QTOFsplash10-01qa-8429500000-b9cdfbf26a1bf05863052016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 40V, Positive-QTOFsplash10-00lr-9213000000-81d952eb13ada2d380172016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 10V, Negative-QTOFsplash10-004i-0000900000-8f76428db1edd586ada62016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 20V, Negative-QTOFsplash10-01t9-0001900000-5e42402d7eb11fdb45fc2016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 40V, Negative-QTOFsplash10-03dj-3009400000-ba4d5a7cf9982f6349c52016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 10V, Negative-QTOFsplash10-004i-0000900000-9c9187b85bcd287b4a7a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 20V, Negative-QTOFsplash10-004i-0000900000-f18ac862b52032d526772021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 40V, Negative-QTOFsplash10-004i-1007900000-64587e5bf38b366b2d832021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 10V, Positive-QTOFsplash10-0089-0009700000-a3dcbd300ee5db4a34392021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 20V, Positive-QTOFsplash10-0a5i-9147200000-1b568633729e023b1f892021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2beta,3alpha,9alpha,24R)-Ergosta-7,22-diene-2,3,9-triol 40V, Positive-QTOFsplash10-0a59-9210000000-a3c620a59a8d6c7f21432021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017070
KNApSAcK IDNot Available
Chemspider ID11596035
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131752255
PDB IDNot Available
ChEBI ID191986
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.