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Showing metabocard for (2xi,4xi)-2,4-Nonadien-1-ol (HMDB0038400)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:42:54 UTC
Update Date2023-02-21 17:26:32 UTC
HMDB IDHMDB0038400
Secondary Accession Numbers
  • HMDB38400
Metabolite Identification
Common Name(2xi,4xi)-2,4-Nonadien-1-ol
Description(2xi,4xi)-2,4-Nonadien-1-ol belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. Based on a literature review a small amount of articles have been published on (2xi,4xi)-2,4-Nonadien-1-ol.
Structure
Data?1677000392
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)


  Mrv0541 05061310252D          

 10  9  0  0  0  0            999 V2000
    4.5375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  2  0  0  0  0
  7  6  1  0  0  0  0
  8  7  2  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
M  END
Download

3D MOL for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)

HMDB0038400
     RDKit          3D
(2xi,4xi)-2,4-Nonadien-1-ol
 26 25  0  0  0  0  0  0  0  0999 V2000
   -3.1481    0.8063   -0.8864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2815    0.2764    0.5243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9460    0.1079    1.1722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0655   -0.8700    0.4010 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2251   -0.9843    1.0941 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3877   -0.6809    0.5664 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4864   -0.1970   -0.7743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6512    0.1058   -1.3091 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9124   -0.0313   -0.5768 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5823    1.1962   -0.4592 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1593    1.0350   -1.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6911    0.0799   -1.5724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5457    1.7427   -0.8124 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8339   -0.6879    0.5579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8505    1.0239    1.0968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1005   -0.2873    2.1998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4412    1.0664    1.2636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0121   -0.6247   -0.6528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6284   -1.8379    0.4776 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1826   -1.3590    2.1434 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2407   -0.8255    1.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5941   -0.0515   -1.4243 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7071    0.4765   -2.3396 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8992   -0.5852    0.3496 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5876   -0.6269   -1.2878 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2474    1.7324    0.3042 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  1 11  1  0
  1 12  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  3 16  1  0
  3 17  1  0
  4 18  1  0
  4 19  1  0
  5 20  1  0
  6 21  1  0
  7 22  1  0
  8 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
M  END
Download

3D SDF for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)


  Mrv0541 05061310252D          

 10  9  0  0  0  0            999 V2000
    4.5375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  2  0  0  0  0
  7  6  1  0  0  0  0
  8  7  2  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0038400

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCC\C=C/C=C\CO

> <INCHI_IDENTIFIER>
InChI=1S/C9H16O/c1-2-3-4-5-6-7-8-9-10/h5-8,10H,2-4,9H2,1H3/b6-5-,8-7-

> <INCHI_KEY>
NCPWFIVLKCFWSP-ISTTXYCBSA-N

> <FORMULA>
C9H16O

> <MOLECULAR_WEIGHT>
140.2227

> <EXACT_MASS>
140.120115134

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
17.817125906967142

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z,4Z)-nona-2,4-dien-1-ol

> <ALOGPS_LOGP>
3.28

> <JCHEM_LOGP>
2.4602294176666666

> <ALOGPS_LOGS>
-2.57

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.206190974778703

> <JCHEM_PKA_STRONGEST_BASIC>
-2.2712120676317946

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
47.219100000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.79e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2Z,4Z)-nona-2,4-dien-1-ol

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)

HMDB0038400
     RDKit          3D
(2xi,4xi)-2,4-Nonadien-1-ol
 26 25  0  0  0  0  0  0  0  0999 V2000
   -3.1481    0.8063   -0.8864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2815    0.2764    0.5243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9460    0.1079    1.1722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0655   -0.8700    0.4010 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2251   -0.9843    1.0941 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3877   -0.6809    0.5664 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4864   -0.1970   -0.7743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6512    0.1058   -1.3091 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9124   -0.0313   -0.5768 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5823    1.1962   -0.4592 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1593    1.0350   -1.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6911    0.0799   -1.5724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5457    1.7427   -0.8124 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8339   -0.6879    0.5579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8505    1.0239    1.0968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1005   -0.2873    2.1998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4412    1.0664    1.2636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0121   -0.6247   -0.6528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6284   -1.8379    0.4776 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1826   -1.3590    2.1434 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2407   -0.8255    1.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5941   -0.0515   -1.4243 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7071    0.4765   -2.3396 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8992   -0.5852    0.3496 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5876   -0.6269   -1.2878 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2474    1.7324    0.3042 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  1 11  1  0
  1 12  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  3 16  1  0
  3 17  1  0
  4 18  1  0
  4 19  1  0
  5 20  1  0
  6 21  1  0
  7 22  1  0
  8 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
M  END
Download

PDB for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       8.470   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.930   1.334   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.160   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.620   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.850  -1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.310  -1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.000  -2.667   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   18    0
END
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3D PDB for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)

COMPND    HMDB0038400
HETATM    1  C1  UNL     1      -3.148   0.806  -0.886  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.282   0.276   0.524  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.946   0.108   1.172  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.065  -0.870   0.401  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.225  -0.984   1.094  1.00  0.00           C  
HETATM    6  C6  UNL     1       1.388  -0.681   0.566  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.486  -0.197  -0.774  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.651   0.106  -1.309  1.00  0.00           C  
HETATM    9  C9  UNL     1       3.912  -0.031  -0.577  1.00  0.00           C  
HETATM   10  O1  UNL     1       4.582   1.196  -0.459  1.00  0.00           O  
HETATM   11  H1  UNL     1      -4.159   1.035  -1.285  1.00  0.00           H  
HETATM   12  H2  UNL     1      -2.691   0.080  -1.572  1.00  0.00           H  
HETATM   13  H3  UNL     1      -2.546   1.743  -0.812  1.00  0.00           H  
HETATM   14  H4  UNL     1      -3.834  -0.688   0.558  1.00  0.00           H  
HETATM   15  H5  UNL     1      -3.850   1.024   1.097  1.00  0.00           H  
HETATM   16  H6  UNL     1      -2.101  -0.287   2.200  1.00  0.00           H  
HETATM   17  H7  UNL     1      -1.441   1.066   1.264  1.00  0.00           H  
HETATM   18  H8  UNL     1      -1.012  -0.625  -0.653  1.00  0.00           H  
HETATM   19  H9  UNL     1      -1.628  -1.838   0.478  1.00  0.00           H  
HETATM   20  H10 UNL     1       0.183  -1.359   2.143  1.00  0.00           H  
HETATM   21  H11 UNL     1       2.241  -0.825   1.229  1.00  0.00           H  
HETATM   22  H12 UNL     1       0.594  -0.051  -1.424  1.00  0.00           H  
HETATM   23  H13 UNL     1       2.707   0.476  -2.340  1.00  0.00           H  
HETATM   24  H14 UNL     1       3.899  -0.585   0.350  1.00  0.00           H  
HETATM   25  H15 UNL     1       4.588  -0.627  -1.288  1.00  0.00           H  
HETATM   26  H16 UNL     1       4.247   1.732   0.304  1.00  0.00           H  
CONECT    1    2   11   12   13
CONECT    2    3   14   15
CONECT    3    4   16   17
CONECT    4    5   18   19
CONECT    5    6    6   20
CONECT    6    7   21
CONECT    7    8    8   22
CONECT    8    9   23
CONECT    9   10   24   25
CONECT   10   26
END
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SMILES for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)

CCCC\C=C/C=C\CO
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INCHI for HMDB0038400 ((2xi,4xi)-2,4-Nonadien-1-ol)

InChI=1S/C9H16O/c1-2-3-4-5-6-7-8-9-10/h5-8,10H,2-4,9H2,1H3/b6-5-,8-7-
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View in JSmolView Stereo Labels
SynonymsNot Available
Chemical FormulaC9H16O
Average Molecular Weight140.2227
Monoisotopic Molecular Weight140.120115134
IUPAC Name(2Z,4Z)-nona-2,4-dien-1-ol
Traditional Name(2Z,4Z)-nona-2,4-dien-1-ol
CAS Registry NumberNot Available
SMILES
CCCC\C=C/C=C\CO
InChI Identifier
InChI=1S/C9H16O/c1-2-3-4-5-6-7-8-9-10/h5-8,10H,2-4,9H2,1H3/b6-5-,8-7-
InChI KeyNCPWFIVLKCFWSP-ISTTXYCBSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty alcohols
Direct ParentFatty alcohols
Alternative Parents
Substituents
  • Fatty alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.38 g/LALOGPS
logP3.28ALOGPS
logP2.46ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)16.21ChemAxon
pKa (Strongest Basic)-2.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity47.22 m³·mol⁻¹ChemAxon
Polarizability17.82 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+136.16131661259
DarkChem[M-H]-134.00431661259
DeepCCS[M+H]+137.32330932474
DeepCCS[M-H]-134.16830932474
DeepCCS[M-2H]-171.21230932474
DeepCCS[M+Na]+146.26130932474
AllCCS[M+H]+134.132859911
AllCCS[M+H-H2O]+130.032859911
AllCCS[M+NH4]+138.032859911
AllCCS[M+Na]+139.132859911
AllCCS[M-H]-137.932859911
AllCCS[M+Na-2H]-140.232859911
AllCCS[M+HCOO]-142.832859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. 5.27 minutes32390414
Predicted by Siyang on May 30, 202216.1997 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20226.32 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid33.2 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2119.4 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid482.7 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid183.1 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid349.1 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid388.3 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid676.6 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid512.3 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)106.1 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1430.4 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid473.1 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1317.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid517.8 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid419.5 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate472.8 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA495.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.8 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(2xi,4xi)-2,4-Nonadien-1-olCCCC\C=C/C=C\CO1815.3Standard polar33892256
(2xi,4xi)-2,4-Nonadien-1-olCCCC\C=C/C=C\CO1165.4Standard non polar33892256
(2xi,4xi)-2,4-Nonadien-1-olCCCC\C=C/C=C\CO1227.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(2xi,4xi)-2,4-Nonadien-1-ol,1TMS,isomer #1CCCC/C=C\C=C/CO[Si](C)(C)C1348.0Semi standard non polar33892256
(2xi,4xi)-2,4-Nonadien-1-ol,1TBDMS,isomer #1CCCC/C=C\C=C/CO[Si](C)(C)C(C)(C)C1569.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol GC-MS (Non-derivatized) - 70eV, Positivesplash10-00ou-9200000000-890a96925a545a53b6bd2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol GC-MS (1 TMS) - 70eV, Positivesplash10-00dl-9500000000-f81110ac121be2b2f73e2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 10V, Positive-QTOFsplash10-00dl-1900000000-9d517e231b79bdb5173d2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 20V, Positive-QTOFsplash10-00di-8900000000-4ebf67e44e105dda0dde2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 40V, Positive-QTOFsplash10-0ktf-9000000000-fff798e246dbe1f027172016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 10V, Negative-QTOFsplash10-000i-0900000000-21d68689b8aa5187a9e82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 20V, Negative-QTOFsplash10-000i-1900000000-fcc5d444ce9cbf5ce8fa2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 40V, Negative-QTOFsplash10-0006-9300000000-602241c0ab28c953e3072016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 10V, Positive-QTOFsplash10-0arr-9000000000-8e823d6c402169d4d7b82021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 20V, Positive-QTOFsplash10-0api-9000000000-09acbff4f14cac91b3172021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 40V, Positive-QTOFsplash10-066r-9000000000-a372aa44d0fdb39730ea2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 10V, Negative-QTOFsplash10-000i-2900000000-82cbfdd637d12c627c102021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 20V, Negative-QTOFsplash10-059l-6900000000-f838d340d969d2e1c8da2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2xi,4xi)-2,4-Nonadien-1-ol 40V, Negative-QTOFsplash10-014i-9000000000-f2eaeda226d37dbb32702021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017752
KNApSAcK IDNot Available
Chemspider ID30777249
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound12385644
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.