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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:19:19 UTC
Update Date2022-03-07 02:56:43 UTC
HMDB IDHMDB0040745
Secondary Accession Numbers
  • HMDB40745
Metabolite Identification
Common NamePolypodoside C
DescriptionPolypodoside C belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton. Polypodoside C is an extremely weak basic (essentially neutral) compound (based on its pKa). Polypodoside C is a constituent of the rhizomes of the licorice fern Polypodium glycyrrhiza. It is a natural sweetener.
Structure
Data?1583262569
Synonyms
ValueSource
Polypodogenin 3-O-beta-D-glucopyranosyl-26-O-alpha-L-acropyranosideHMDB
Polypodogenin 3-O-β-D-glucopyranosyl-26-O-α-L-acropyranosideHMDB
Polypodoside CHMDB
Chemical FormulaC40H64O14
Average Molecular Weight768.938
Monoisotopic Molecular Weight768.429606741
IUPAC Name(1R,2R,5S,7S,11S,14S,15S)-14-[(1R)-1-[(2S,5R,6S)-6-{[(2S,3R,4R,5S,6S)-3,5-dihydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-5-methyloxan-2-yl]ethyl]-14-hydroxy-2,15-dimethyl-5-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-8-one
Traditional Name(1R,2R,5S,7S,11S,14S,15S)-14-[(1R)-1-[(2S,5R,6S)-6-{[(2S,3R,4R,5S,6S)-3,5-dihydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-5-methyloxan-2-yl]ethyl]-14-hydroxy-2,15-dimethyl-5-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-8-one
CAS Registry Number120015-17-0
SMILES
[H][C@@]12CC[C@](O)([C@H](C)[C@]3([H])CC[C@@H](C)[C@H](O[C@]4([H])O[C@@H](C)[C@H](O)[C@@H](OC)[C@H]4O)O3)[C@@]1(C)CC[C@@]1([H])C2=CC(=O)[C@@]2([H])C[C@H](CC[C@]12C)O[C@]1([H])O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O
InChI Identifier
InChI=1S/C40H64O14/c1-18-7-8-27(52-35(18)54-37-33(47)34(49-6)29(43)20(3)50-37)19(2)40(48)14-11-24-22-16-26(42)25-15-21(9-12-38(25,4)23(22)10-13-39(24,40)5)51-36-32(46)31(45)30(44)28(17-41)53-36/h16,18-21,23-25,27-37,41,43-48H,7-15,17H2,1-6H3/t18-,19-,20+,21+,23+,24+,25-,27+,28-,29+,30-,31+,32-,33-,34-,35+,36-,37+,38-,39+,40+/m1/s1
InChI KeyMJFULEHSWVMRQG-ICMXPTIASA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassSteroidal glycosides
Direct ParentSteroidal glycosides
Alternative Parents
Substituents
  • Diterpene glycoside
  • Cholestane-skeleton
  • Steroidal glycoside
  • Ecdysteroid
  • Diterpenoid
  • 6-oxosteroid
  • 17-hydroxysteroid
  • Oxosteroid
  • Hydroxysteroid
  • Terpene glycoside
  • Delta-7-steroid
  • O-glycosyl compound
  • Glycosyl compound
  • Cyclohexenone
  • Oxane
  • Monosaccharide
  • Tertiary alcohol
  • Cyclic alcohol
  • Secondary alcohol
  • Ketone
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Ether
  • Dialkyl ether
  • Acetal
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.095 g/LALOGPS
logP0.99ALOGPS
logP1.6ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)11.95ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area214.06 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity191.74 m³·mol⁻¹ChemAxon
Polarizability85.08 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-288.51630932474
DeepCCS[M+Na]+262.53830932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Polypodoside C[H][C@@]12CC[C@](O)([C@H](C)[C@]3([H])CC[C@@H](C)[C@H](O[C@]4([H])O[C@@H](C)[C@H](O)[C@@H](OC)[C@H]4O)O3)[C@@]1(C)CC[C@@]1([H])C2=CC(=O)[C@@]2([H])C[C@H](CC[C@]12C)O[C@]1([H])O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O3977.1Standard polar33892256
Polypodoside C[H][C@@]12CC[C@](O)([C@H](C)[C@]3([H])CC[C@@H](C)[C@H](O[C@]4([H])O[C@@H](C)[C@H](O)[C@@H](OC)[C@H]4O)O3)[C@@]1(C)CC[C@@]1([H])C2=CC(=O)[C@@]2([H])C[C@H](CC[C@]12C)O[C@]1([H])O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O5479.4Standard non polar33892256
Polypodoside C[H][C@@]12CC[C@](O)([C@H](C)[C@]3([H])CC[C@@H](C)[C@H](O[C@]4([H])O[C@@H](C)[C@H](O)[C@@H](OC)[C@H]4O)O3)[C@@]1(C)CC[C@@]1([H])C2=CC(=O)[C@@]2([H])C[C@H](CC[C@]12C)O[C@]1([H])O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O5912.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_7) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TMS_1_8) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_7) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Polypodoside C GC-MS (TBDMS_1_8) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Polypodoside C 10V, Negative-QTOFsplash10-014i-0200002900-472371fbf1dc5ef245f12021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Polypodoside C 20V, Negative-QTOFsplash10-00mk-6900623700-29c8ed53cfa4e88142ea2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Polypodoside C 40V, Negative-QTOFsplash10-052f-9500015300-de53a52b7e3430ab95582021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Polypodoside C 10V, Positive-QTOFsplash10-014i-0100020900-c5e0c4dc300b42a42d1d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Polypodoside C 20V, Positive-QTOFsplash10-03dl-1100591200-487b012fe5b7b373f19d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Polypodoside C 40V, Positive-QTOFsplash10-052e-3912214000-ec156b17e8eccda92c362021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020555
KNApSAcK IDC00056924
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.