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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2013-02-26 19:03:21 UTC
Update Date2022-09-22 18:34:27 UTC
HMDB IDHMDB0059772
Secondary Accession Numbers
  • HMDB59772
Metabolite Identification
Common NameN-Phenylacetylglutamic acid
DescriptionN-Phenylacetylglutamic acid belongs to the class of organic compounds known as glutamic acid and derivatives. Glutamic acid and derivatives are compounds containing glutamic acid or a derivative thereof resulting from reaction of glutamic acid at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. These are compounds containing an alpha amino acid which bears an acyl group at his terminal nitrogen atom. N-Phenylacetylglutamic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563865972
Synonyms
ValueSource
N-PhenylacetylglutamateGenerator
(2S)-2-[(1-Hydroxy-2-phenylethylidene)amino]pentanedioateGenerator
Chemical FormulaC13H15NO5
Average Molecular Weight265.2619
Monoisotopic Molecular Weight265.095022595
IUPAC Name(2S)-2-(2-phenylacetamido)pentanedioic acid
Traditional Name(2S)-2-(2-phenylacetamido)pentanedioic acid
CAS Registry NumberNot Available
SMILES
OC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(O)=O
InChI Identifier
InChI=1S/C13H15NO5/c15-11(8-9-4-2-1-3-5-9)14-10(13(18)19)6-7-12(16)17/h1-5,10H,6-8H2,(H,14,15)(H,16,17)(H,18,19)/t10-/m0/s1
InChI KeyPTSRBZOZSRJCKX-JTQLQIEISA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glutamic acid and derivatives. Glutamic acid and derivatives are compounds containing glutamic acid or a derivative thereof resulting from reaction of glutamic acid at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentGlutamic acid and derivatives
Alternative Parents
Substituents
  • Glutamic acid or derivatives
  • N-acyl-alpha-amino acid
  • N-acyl-alpha amino acid or derivatives
  • N-acyl-l-alpha-amino acid
  • Phenylacetamide
  • Monocyclic benzene moiety
  • Dicarboxylic acid or derivatives
  • Benzenoid
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Carboxylic acid
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organic oxide
  • Hydrocarbon derivative
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.7 g/LALOGPS
logP0.5ALOGPS
logP0.72ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)3.58ChemAxon
pKa (Strongest Basic)-2.3ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area103.7 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity65.45 m³·mol⁻¹ChemAxon
Polarizability25.76 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+161.54231661259
DarkChem[M-H]-159.75931661259
DeepCCS[M+H]+158.84430932474
DeepCCS[M-H]-156.48630932474
DeepCCS[M-2H]-189.37230932474
DeepCCS[M+Na]+164.93730932474
AllCCS[M+H]+159.132859911
AllCCS[M+H-H2O]+155.832859911
AllCCS[M+NH4]+162.132859911
AllCCS[M+Na]+163.032859911
AllCCS[M-H]-160.332859911
AllCCS[M+Na-2H]-160.532859911
AllCCS[M+HCOO]-160.832859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.4 minutes32390414
Predicted by Siyang on May 30, 202210.287 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.89 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1390.3 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid238.2 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid116.3 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid168.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid86.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid311.1 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid350.9 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)173.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid760.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid356.7 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1045.4 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid232.3 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid250.2 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate355.1 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA197.0 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water192.8 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
N-Phenylacetylglutamic acidOC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(O)=O3905.4Standard polar33892256
N-Phenylacetylglutamic acidOC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(O)=O2040.5Standard non polar33892256
N-Phenylacetylglutamic acidOC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(O)=O2410.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
N-Phenylacetylglutamic acid,1TMS,isomer #1C[Si](C)(C)OC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(=O)O2346.7Semi standard non polar33892256
N-Phenylacetylglutamic acid,1TMS,isomer #2C[Si](C)(C)OC(=O)[C@H](CCC(=O)O)NC(=O)CC1=CC=CC=C12310.6Semi standard non polar33892256
N-Phenylacetylglutamic acid,1TMS,isomer #3C[Si](C)(C)N(C(=O)CC1=CC=CC=C1)[C@@H](CCC(=O)O)C(=O)O2316.8Semi standard non polar33892256
N-Phenylacetylglutamic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(=O)O[Si](C)(C)C2326.2Semi standard non polar33892256
N-Phenylacetylglutamic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)CC[C@@H](C(=O)O)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C2312.2Semi standard non polar33892256
N-Phenylacetylglutamic acid,2TMS,isomer #3C[Si](C)(C)OC(=O)[C@H](CCC(=O)O)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C2309.7Semi standard non polar33892256
N-Phenylacetylglutamic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)CC[C@@H](C(=O)O[Si](C)(C)C)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C2299.1Semi standard non polar33892256
N-Phenylacetylglutamic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)CC[C@@H](C(=O)O[Si](C)(C)C)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C2325.2Standard non polar33892256
N-Phenylacetylglutamic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)CC[C@@H](C(=O)O[Si](C)(C)C)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C2712.1Standard polar33892256
N-Phenylacetylglutamic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(=O)O2596.8Semi standard non polar33892256
N-Phenylacetylglutamic acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)[C@H](CCC(=O)O)NC(=O)CC1=CC=CC=C12555.3Semi standard non polar33892256
N-Phenylacetylglutamic acid,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C(=O)CC1=CC=CC=C1)[C@@H](CCC(=O)O)C(=O)O2548.6Semi standard non polar33892256
N-Phenylacetylglutamic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC[C@H](NC(=O)CC1=CC=CC=C1)C(=O)O[Si](C)(C)C(C)(C)C2798.8Semi standard non polar33892256
N-Phenylacetylglutamic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)CC[C@@H](C(=O)O)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C(C)(C)C2811.9Semi standard non polar33892256
N-Phenylacetylglutamic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)[C@H](CCC(=O)O)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C(C)(C)C2804.0Semi standard non polar33892256
N-Phenylacetylglutamic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C(C)(C)C3001.5Semi standard non polar33892256
N-Phenylacetylglutamic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C(C)(C)C2907.6Standard non polar33892256
N-Phenylacetylglutamic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N(C(=O)CC1=CC=CC=C1)[Si](C)(C)C(C)(C)C3015.3Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - N-Phenylacetylglutamic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-00kf-9630000000-5e0b521e8a713bf14d552017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - N-Phenylacetylglutamic acid GC-MS (2 TMS) - 70eV, Positivesplash10-0006-9232000000-4f91eb7371a9d5a29dbe2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - N-Phenylacetylglutamic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 10V, Positive-QTOFsplash10-00l2-0290000000-f9fcb6aff67eadfed17b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 20V, Positive-QTOFsplash10-0ukc-3940000000-7715ceedac8896df05782017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 40V, Positive-QTOFsplash10-0006-9400000000-8e62f51deaf8b833dd982017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 10V, Negative-QTOFsplash10-03dj-0090000000-72b66ee6f355894e494d2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 20V, Negative-QTOFsplash10-0fdk-1790000000-20dfc405e198de6edc032017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 40V, Negative-QTOFsplash10-0f96-7900000000-442d0c720d4960fc68242017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 10V, Positive-QTOFsplash10-00ls-1920000000-807efd3a431bc1593d122021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 20V, Positive-QTOFsplash10-0fr6-5900000000-5f6fef9619344f55f6fd2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 40V, Positive-QTOFsplash10-0006-9200000000-077ffea0bedc4fae2d882021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 10V, Negative-QTOFsplash10-004i-0900000000-86a874c66903f262ba1c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 20V, Negative-QTOFsplash10-0ufr-0900000000-8323aceb3320d31b04ca2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Phenylacetylglutamic acid 40V, Negative-QTOFsplash10-0f6x-9600000000-fcaab1eab6b2655ad1122021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Feces
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal
details
UrineDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11579826
PDB IDNot Available
ChEBI ID89860
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available