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Human Metabolome Database Version 3.5

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Showing metabocard for Sulfide (HMDB00598)

Record Information
Version 3.5
Creation Date 2006-08-15 16:23:21 -0600
Update Date 2013-02-08 11:19:15 -0700
HMDB ID HMDB00598
Secondary Accession Numbers None
Metabolite Identification
Common Name Sulfide
Description Sulfur (Greek is theion) is the chemical element in the periodic table that has the symbol S and atomic number 16. It is an abundant, tasteless, odorless, multivalent non-metal. Sulfur, in its native form, is a yellow crystalline solid. In nature, it can be found as the pure element or as sulfide and sulfate minerals. It is an essential element for life. The amino acids cysteine and methionine contain sulfur, as do all polypeptides, proteins, and enzymes which contain these amino acids. This makes sulfur a necessary component of all living cells. Disulfide bonds between polypeptides are very important in protein assembly and structure. Homocysteine and taurine are also sulfur containing amino acids but are not coded for by DNA nor are they part of the primary structure of proteins. Some forms of bacteria use hydrogen sulfide (H2S) in the place of water as the electron donor in a primitive photosynthesis-like process. Sulfur is absorbed by plants via the roots from soil as the sulfate ion and reduced to sulfide before it is incorporated into cysteine and other organic sulfur compounds (sulfur assimilation). Inorganic sulfur forms a part of iron-sulfur clusters, and sulfur is the bridging ligand in the CuA site of cytochrome c oxidase. Sulfur is an important component of coenzyme A. At room temperature, sulfur is a soft bright yellow solid. Although sulfur is blamed for the smell of rotten eggs elemental sulfur has only the faintest odor (the odor associated with rotten eggs is actually due to hydrogen sulfide and organic sulfur compounds). It burns with a blue flame that emits sulfur dioxide, notable for its peculiar suffocating odor. Sulfur is insoluble in water but soluble in carbon disulfide and to a lesser extent in other organic solvents such as benzene. Through its major derivative, sulfuric acid (H2SO4), sulfur ranks as one of the more important industrial raw materials. It is of prime importance to every sector of the world's economies. The Latin name of the element is sulfur with an F. Since it is an original Latin name and not a Classical Greek loan, the fricative phoneme is indeed denoted with f rather than ph. Its commercial uses are primarily in fertilizers, but it is also widely used in gunpowder, matches, insecticides and fungicides; A flammable, poisonous gas with a characteristic odor of rotten eggs. It is used in the manufacture of chemicals, in metallurgy, and as an analytical reagent. (From Merck Index, 11th ed.) The burning of coal and petroleum by industry and power plants liberates huge amounts of sulfur dioxide (SO2) which reacts with atmospheric water and oxygen to produce sulfuric acid. This sulfuric acid is a component of acid rain, which lowers the pH of soil and freshwater bodies, resulting in substantial damage to the natural environment and chemical weathering of statues and architecture.
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. Sulfanediide
  2. Sulfide
  3. Sulfur
  4. Sulphide
Chemical Formula S
Average Molecular Weight 32.065
Monoisotopic Molecular Weight 31.97207069
IUPAC Name sulfanediide
Traditional IUPAC Name sulfide
CAS Registry Number 18496-25-8
SMILES [S--]
InChI Identifier InChI=1S/S/q-2
InChI Key UCKMPCXJQFINFW-UHFFFAOYSA-N
Chemical Taxonomy
Kingdom Inorganic Compounds
Super Class Homogeneous Non-metal Compounds
Class Homogeneous Other Non-metal Compounds
Sub Class N/A
Other Descriptors
  • an anion(Cyc)
  • monoatomic sulfur(ChEBI)
Substituents
  • N/A
Direct Parent Homogeneous Other Non-metal Compounds
Ontology
Status Detected and Quantified
Origin
  • Drug
  • Toxin/Pollutant
Biofunction
  • Essential minerals
Application Not Available
Cellular locations Not Available
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point 112 °C Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
LogP -0.037 ChemAxon
Hydrogen Acceptor Count 0 ChemAxon
Hydrogen Donor Count 0 ChemAxon
Polar Surface Area 0 A2 ChemAxon
Rotatable Bond Count 0 ChemAxon
Refractivity 5.76 ChemAxon
Polarizability 2.93 ChemAxon
Formal Charge -2 ChemAxon
Physiological Charge -1 ChemAxon
Spectra
Not Available
Biological Properties
Cellular Locations Not Available
Biofluid Locations
  • Blood
Tissue Location
  • Liver
  • Brain
  • Skin
  • Platelet
  • Lymph Node
  • Cartilage
  • Hair
  • Tongue
Pathways Not Available
Normal Concentrations
Biofluid Status Value Age Sex Condition Comments
Blood Detected and Quantified
Article_icon
< 0.003 uM Not Specified Not Specified Normal Not Available
Abnormal Concentrations
Biofluid Status Value Age Sex Condition Comments
Blood Detected and Quantified
Article_icon
30 uM Adult (>18 years old) Male Fatal hydrogen sulfide poisoning Collected 4 h after death in a hospital
Blood Detected and Quantified
Article_icon
21.21 uM Adult (>18 years old) Male Fatal hydrogen sulfide poisoning Not Available
Blood Detected and Quantified
Article_icon
7-950 uM Adult (>18 years old) Male Fatal hydrogen sulfide poisoning Collected at the time of autopsy
Blood Detected and Quantified
Article_icon
102.14 (9.98-291.91) uM Adult (>18 years old) Male Fatal hydrogen sulfide poisoning Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID Not Available
Phenol Explorer Compound ID Not Available
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB022136
KNApSAcK ID Not Available
Chemspider ID 27079 Link_out
KEGG Compound ID C00087 Link_out
BioCyc ID CPD-7046 Link_out
BiGG ID Not Available
Wikipedia Link Sulfide Link_out
NuGOwiki Link HMDB00598 Link_out
Metagene Link HMDB00598 Link_out
METLIN ID Not Available
PubChem Compound 29109 Link_out
PDB ID Not Available
ChEBI ID 15138 Link_out
References
Synthesis Reference Green, Martina; Verkoczy, Bela; Lown, Elizabeth M.; Strausz, Otto P. The reactions of sulfur atoms with propadiene and 1,2-butadiene. Canadian Journal of Chemistry (1985), 63(3), 667-75.
Material Safety Data Sheet (MSDS) Not Available
General References
  1. Yoshida K, Kuroda K, Zhou X, Inoue Y, Date Y, Wanibuchi H, Fukushima S, Endo G: Urinary sulfur-containing metabolite produced by intestinal bacteria following oral administration of dimethylarsinic acid to rats. Chem Res Toxicol. 2003 Sep;16(9):1124-9. Pubmed: 12971800 Link_out
  2. Vargas HI, Vargas MP, Gonzalez KD, Burla M, Venegas R, Diggles L, Mishkin F, Klein SR, Khalkhali I: Immediate preoperative injection of 99m-Tc sulfur colloid is effective in the detection of breast sentinel lymph nodes. Am Surg. 2002 Dec;68(12):1083-7. Pubmed: 12516814 Link_out
  3. Yonezawa H, Takasaki K, Teraoka K, Asaka T, Sato C, Tsuchiya K: Effects of tongue and oral mucosa cleaning on oral Candida species and production of volatile sulfur compounds in the elderly in a nursing home. J Med Dent Sci. 2003 Mar;50(1):1-8. Pubmed: 12715913 Link_out
  4. Pandit-Taskar N, Dauer LT, Montgomery L, St Germain J, Zanzonico PB, Divgi CR: Organ and fetal absorbed dose estimates from 99mTc-sulfur colloid lymphoscintigraphy and sentinel node localization in breast cancer patients. J Nucl Med. 2006 Jul;47(7):1202-8. Pubmed: 16818956 Link_out
  5. Dauphine CE, Khalkhali I, Vargas MP, Isaac NM, Haukoos J, Vargas HI: Intraoperative injection of technetium-99m sulfur colloid is effective in the detection of sentinel lymph nodes in breast cancer. Am J Surg. 2006 Oct;192(4):423-6. Pubmed: 16978942 Link_out
  6. Koshimune S, Awano S, Gohara K, Kurihara E, Ansai T, Takehara T: Low salivary flow and volatile sulfur compounds in mouth air. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 2003 Jul;96(1):38-41. Pubmed: 12847442 Link_out
  7. Walash MI, Metwally ME, El-Brashy AM, Abdelal AA: Kinetic spectrophotometric determination of some sulfur containing compounds in pharmaceutical preparations and human serum. Farmaco. 2003 Dec;58(12):1325-32. Pubmed: 14630247 Link_out
  8. Macone A, Matarese RM, Gentili V, Antonucci A, Dupre S, Nardini M: Effect of aminoethylcysteine ketimine decarboxylated dimer, a natural sulfur compound present in human plasma, on tert-butyl hydroperoxide-induced oxidative stress in human monocytic U937 cells. Free Radic Res. 2004 Jul;38(7):705-14. Pubmed: 15453636 Link_out
  9. Lee CH, Kho HS, Chung SC, Lee SW, Kim YK: The relationship between volatile sulfur compounds and major halitosis-inducing factors. J Periodontol. 2003 Jan;74(1):32-7. Pubmed: 12593593 Link_out
  10. de la Flor St Remy RR, Montes-Bayon M, Sanz-Medel A: Determination of total homocysteine in human serum by capillary gas chromatography with sulfur-specific detection by double focusing ICP-MS. Anal Bioanal Chem. 2003 Sep;377(2):299-305. Epub 2003 Jul 3. Pubmed: 12844208 Link_out
  11. Codipilly DP, Kaufman HW, Kleinberg I: Use of a novel group of oral malodor measurements to evaluate an anti-oral malodor mouthrinse (TriOralTM) in humans. J Clin Dent. 2004;15(4):98-104. Pubmed: 15794454 Link_out
  12. Joseph UA, Barron BJ, Lamki LM: Rim sign in Tc-99m sulfur colloid hepatic scintigraphy. Clin Nucl Med. 2005 Apr;30(4):284-5. Pubmed: 15764894 Link_out

Enzymes
Name: NADH-ubiquinone oxidoreductase chain 1
Reactions:
    Gene Name: MT-ND1
    Uniprot ID: P03886 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
    Reactions:
      Gene Name: NDUFB1
      Uniprot ID: O75438 Link_out
      Protein Sequence: FASTA
      Gene Sequence: FASTA
      Name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
      Reactions:
        Gene Name: NDUFS2
        Uniprot ID: O75306 Link_out
        Protein Sequence: FASTA
        Gene Sequence: FASTA
        Name: Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
        Reactions:
          Gene Name: SDHC
          Uniprot ID: Q99643 Link_out
          Protein Sequence: FASTA
          Gene Sequence: FASTA
          Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
          Reactions:
            Gene Name: NDUFA12
            Uniprot ID: Q9UI09 Link_out
            Protein Sequence: FASTA
            Gene Sequence: FASTA
            Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
            Reactions:
              Gene Name: NDUFA1
              Uniprot ID: O15239 Link_out
              Protein Sequence: FASTA
              Gene Sequence: FASTA
              Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2
              Reactions:
                Gene Name: NDUFA4L2
                Uniprot ID: Q9NRX3 Link_out
                Protein Sequence: FASTA
                Gene Sequence: FASTA
                Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
                Reactions:
                  Gene Name: NDUFA3
                  Uniprot ID: O95167 Link_out
                  Protein Sequence: FASTA
                  Gene Sequence: FASTA
                  Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
                  Reactions:
                    Gene Name: NDUFA8
                    Uniprot ID: P51970 Link_out
                    Protein Sequence: FASTA
                    Gene Sequence: FASTA
                    Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4
                    Reactions:
                      Gene Name: NDUFA4
                      Uniprot ID: O00483 Link_out
                      Protein Sequence: FASTA
                      Gene Sequence: FASTA
                      Name: NADH-ubiquinone oxidoreductase chain 4L
                      Reactions:
                        Gene Name: MT-ND4L
                        Uniprot ID: P03901 Link_out
                        Protein Sequence: FASTA
                        Gene Sequence: FASTA
                        Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
                        Reactions:
                          Gene Name: NDUFA11
                          Uniprot ID: Q86Y39 Link_out
                          Protein Sequence: FASTA
                          Gene Sequence: FASTA
                          Name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
                          Reactions:
                            Gene Name: NDUFS4
                            Uniprot ID: O43181 Link_out
                            Protein Sequence: FASTA
                            Gene Sequence: FASTA
                            Name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
                            Reactions:
                              Gene Name: NDUFS3
                              Uniprot ID: O75489 Link_out
                              Protein Sequence: FASTA
                              Gene Sequence: FASTA
                              Name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
                              Reactions:
                                Gene Name: NDUFS5
                                Uniprot ID: O43920 Link_out
                                Protein Sequence: FASTA
                                Gene Sequence: FASTA
                                Name: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
                                Reactions:
                                  Gene Name: NDUFV2
                                  Uniprot ID: P19404 Link_out
                                  Protein Sequence: FASTA
                                  Gene Sequence: FASTA
                                  Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
                                  Reactions:
                                    Gene Name: NDUFA10
                                    Uniprot ID: O95299 Link_out
                                    Protein Sequence: FASTA
                                    Gene Sequence: FASTA
                                    Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
                                    Reactions:
                                      Gene Name: NDUFA6
                                      Uniprot ID: P56556 Link_out
                                      Protein Sequence: FASTA
                                      Gene Sequence: FASTA
                                      Name: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
                                      Reactions:
                                        Gene Name: NDUFB4
                                        Uniprot ID: O95168 Link_out
                                        Protein Sequence: FASTA
                                        Gene Sequence: FASTA
                                        Name: Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
                                        Reactions:
                                          Gene Name: SDHA
                                          Uniprot ID: P31040 Link_out
                                          Protein Sequence: FASTA
                                          Gene Sequence: FASTA
                                          Name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
                                          Reactions:
                                            Gene Name: NDUFS8
                                            Uniprot ID: O00217 Link_out
                                            Protein Sequence: FASTA
                                            Gene Sequence: FASTA
                                            Name: NADH-ubiquinone oxidoreductase chain 2
                                            Reactions:
                                              Gene Name: MT-ND2
                                              Uniprot ID: P03891 Link_out
                                              Protein Sequence: FASTA
                                              Gene Sequence: FASTA
                                              Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
                                              Reactions:
                                                Gene Name: NDUFA7
                                                Uniprot ID: O95182 Link_out
                                                Protein Sequence: FASTA
                                                Gene Sequence: FASTA
                                                Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
                                                Reactions:
                                                  Gene Name: NDUFA2
                                                  Uniprot ID: O43678 Link_out
                                                  Protein Sequence: FASTA
                                                  Gene Sequence: FASTA
                                                  Name: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
                                                  Reactions:
                                                    Gene Name: NDUFS1
                                                    Uniprot ID: P28331 Link_out
                                                    Protein Sequence: FASTA
                                                    Gene Sequence: FASTA
                                                    Name: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
                                                    Reactions:
                                                      Gene Name: NDUFB5
                                                      Uniprot ID: O43674 Link_out
                                                      Protein Sequence: FASTA
                                                      Gene Sequence: FASTA
                                                      Name: NADH dehydrogenase [ubiquinone] 1 subunit C2
                                                      Reactions:
                                                        Gene Name: NDUFC2
                                                        Uniprot ID: O95298 Link_out
                                                        Protein Sequence: FASTA
                                                        Gene Sequence: FASTA
                                                        Name: Dimethylaniline monooxygenase [N-oxide-forming] 3
                                                        Reactions:
                                                          Gene Name: FMO3
                                                          Uniprot ID: P31513 Link_out
                                                          Protein Sequence: FASTA
                                                          Gene Sequence: FASTA
                                                          Name: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
                                                          Reactions:
                                                            Gene Name: NDUFB3
                                                            Uniprot ID: O43676 Link_out
                                                            Protein Sequence: FASTA
                                                            Gene Sequence: FASTA
                                                            Name: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
                                                            Reactions:
                                                              Gene Name: NDUFB7
                                                              Uniprot ID: P17568 Link_out
                                                              Protein Sequence: FASTA
                                                              Gene Sequence: FASTA
                                                              Name: Acyl carrier protein, mitochondrial
                                                              Reactions:
                                                                Gene Name: NDUFAB1
                                                                Uniprot ID: O14561 Link_out
                                                                Protein Sequence: FASTA
                                                                Gene Sequence: FASTA
                                                                Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
                                                                Reactions:
                                                                  Gene Name: NDUFA5
                                                                  Uniprot ID: Q16718 Link_out
                                                                  Protein Sequence: FASTA
                                                                  Gene Sequence: FASTA
                                                                  Name: Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial
                                                                  Reactions:
                                                                    Gene Name: ETFDH
                                                                    Uniprot ID: Q16134 Link_out
                                                                    Protein Sequence: FASTA
                                                                    Gene Sequence: FASTA
                                                                    Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
                                                                    Reactions:
                                                                      Gene Name: NDUFA9
                                                                      Uniprot ID: Q16795 Link_out
                                                                      Protein Sequence: FASTA
                                                                      Gene Sequence: FASTA
                                                                      Name: NADH-ubiquinone oxidoreductase chain 4
                                                                      Reactions:
                                                                        Gene Name: MT-ND4
                                                                        Uniprot ID: P03905 Link_out
                                                                        Protein Sequence: FASTA
                                                                        Gene Sequence: FASTA
                                                                        Name: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial
                                                                        Reactions:
                                                                          Gene Name: SDHD
                                                                          Uniprot ID: O14521 Link_out
                                                                          Protein Sequence: FASTA
                                                                          Gene Sequence: FASTA
                                                                          Name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
                                                                          Reactions:
                                                                            Gene Name: NDUFS7
                                                                            Uniprot ID: O75251 Link_out
                                                                            Protein Sequence: FASTA
                                                                            Gene Sequence: FASTA
                                                                            Name: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
                                                                            Reactions:
                                                                              Gene Name: NDUFV1
                                                                              Uniprot ID: P49821 Link_out
                                                                              Protein Sequence: FASTA
                                                                              Gene Sequence: FASTA
                                                                              Name: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
                                                                              Reactions:
                                                                                Gene Name: NDUFB9
                                                                                Uniprot ID: Q9Y6M9 Link_out
                                                                                Protein Sequence: FASTA
                                                                                Gene Sequence: FASTA
                                                                                Name: NADH-ubiquinone oxidoreductase chain 6
                                                                                Reactions:
                                                                                  Gene Name: MT-ND6
                                                                                  Uniprot ID: P03923 Link_out
                                                                                  Protein Sequence: FASTA
                                                                                  Gene Sequence: FASTA
                                                                                  Name: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
                                                                                  Reactions:
                                                                                    Gene Name: NDUFA13
                                                                                    Uniprot ID: Q9P0J0 Link_out
                                                                                    Protein Sequence: FASTA
                                                                                    Gene Sequence: FASTA
                                                                                    Name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
                                                                                    Reactions:
                                                                                      Gene Name: NDUFS6
                                                                                      Uniprot ID: O75380 Link_out
                                                                                      Protein Sequence: FASTA
                                                                                      Gene Sequence: FASTA
                                                                                      Name: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
                                                                                      Reactions:
                                                                                        Gene Name: SDHB
                                                                                        Uniprot ID: P21912 Link_out
                                                                                        Protein Sequence: FASTA
                                                                                        Gene Sequence: FASTA
                                                                                        Name: Aconitate hydratase, mitochondrial
                                                                                        Reactions:
                                                                                          Gene Name: ACO2
                                                                                          Uniprot ID: Q99798 Link_out
                                                                                          Protein Sequence: FASTA
                                                                                          Gene Sequence: FASTA
                                                                                          Name: Cytoplasmic aconitate hydratase
                                                                                          Reactions:
                                                                                            Gene Name: ACO1
                                                                                            Uniprot ID: P21399 Link_out
                                                                                            Protein Sequence: FASTA
                                                                                            Gene Sequence: FASTA
                                                                                            Name: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
                                                                                            Reactions:
                                                                                              Gene Name: NDUFB11
                                                                                              Uniprot ID: Q9NX14 Link_out
                                                                                              Protein Sequence: FASTA
                                                                                              Gene Sequence: FASTA
                                                                                              Name: Lipoyl synthase, mitochondrial
                                                                                              Reactions:
                                                                                                Gene Name: LIAS
                                                                                                Uniprot ID: O43766 Link_out
                                                                                                Protein Sequence: FASTA
                                                                                                Gene Sequence: FASTA
                                                                                                Name: NADH dehydrogenase (Ubiquinone) 1 beta subcomplex, 2, 8kDa
                                                                                                Reactions:
                                                                                                  Gene Name: NDUFB2
                                                                                                  Uniprot ID: A4D1T5 Link_out
                                                                                                  Protein Sequence: FASTA
                                                                                                  Gene Sequence: FASTA