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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-03-20 21:18:43 UTC
Update Date2021-09-14 15:45:09 UTC
HMDB IDHMDB0059948
Secondary Accession Numbers
  • HMDB59948
Metabolite Identification
Common NameChlorin E6
DescriptionChlorin E6 (chlorin(e6)) is a photosensitizer used in photodynamic therapy. Photodynamic therapy (PDT) is a form of phototherapy using nontoxic light-sensitive compounds that are exposed selectively to light, whereupon they become toxic to targeted malignant and other diseased cells. PDT has proven ability to kill microbial cells including bacteria, fungi and viruses. PDT is popularly used in treating acne. It is used clinically to treat a wide range of medical conditions, including wet age-related macular degeneration and malignant cancers, and is recognised as a treatment strategy which is both minimally invasive and minimally toxic. A photosensitizer is a chemical compound that can be promoted to an excited state upon absorption light and undergo intersystem crossing with oxygen to produce singlet oxygen. This species rapidly attacks any organic compounds it encounters, thus being highly cytotoxic. A wide array of photosensitizers for PDT exist. They can be divided into porphyrins, chlorophylls and dyes. Some examples include aminolevulinic acid (ALA), Silicon Phthalocyanine Pc 4, m-tetrahydroxyphenylchlorin (mTHPC), and mono-L-aspartyl chlorin e6 (NPe6). (Wikipedia)
Structure
Data?1563865995
Synonyms
ValueSource
20-(2-Carboxyethyl)-2-(carboxymethyl)-14-ethenyl-9-ethyl-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1,3,5,7,9,11(23),12,14,16,18(21)-decaene-4-carboxylateHMDB
Chemical FormulaC34H36N4O6
Average Molecular Weight596.6728
Monoisotopic Molecular Weight596.263484904
IUPAC Name20-(2-carboxyethyl)-2-(carboxymethyl)-14-ethenyl-9-ethyl-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1,3,5,7,9,11(23),12,14,16,18(21)-decaene-4-carboxylic acid
Traditional Name20-(2-carboxyethyl)-2-(carboxymethyl)-14-ethenyl-9-ethyl-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1,3,5,7,9,11(23),12,14,16,18(21)-decaene-4-carboxylic acid
CAS Registry NumberNot Available
SMILES
CCC1=C(C)C2=N\C\1=C/C1=C(C)C(C(O)=O)=C(N1)\C(CC(O)=O)=C1/N=C(/C=C3\N/C(=C\2)C(C=C)=C3C)C(C)C1CCC(O)=O
InChI Identifier
InChI=1S/C34H36N4O6/c1-7-19-15(3)23-12-25-17(5)21(9-10-29(39)40)32(37-25)22(11-30(41)42)33-31(34(43)44)18(6)26(38-33)14-28-20(8-2)16(4)24(36-28)13-27(19)35-23/h7,12-14,17,21,35,38H,1,8-11H2,2-6H3,(H,39,40)(H,41,42)(H,43,44)/b23-12-,24-13-,25-12-,26-14-,27-13-,28-14-,32-22-,33-22-
InChI KeyVAJLRIOJDADNAT-XORBMCRRSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as chlorins. These are large heterocyclic aromatic ring systems consisting, at the core, of three pyrroles and one pyrroline coupled through four methine linkages.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassTetrapyrroles and derivatives
Sub ClassChlorins
Direct ParentChlorins
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.022 g/LALOGPS
logP3.39ALOGPS
logP4.35ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)3.04ChemAxon
pKa (Strongest Basic)5.06ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area169.26 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity165.9 m³·mol⁻¹ChemAxon
Polarizability66.52 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+245.81130932474
DeepCCS[M-H]-243.91630932474
DeepCCS[M-2H]-277.15530932474
DeepCCS[M+Na]+251.44330932474
AllCCS[M+H]+241.032859911
AllCCS[M+H-H2O]+239.632859911
AllCCS[M+NH4]+242.332859911
AllCCS[M+Na]+242.732859911
AllCCS[M-H]-240.632859911
AllCCS[M+Na-2H]-242.632859911
AllCCS[M+HCOO]-244.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.6.94 minutes32390414
Predicted by Siyang on May 30, 202214.9823 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.74 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2796.3 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid179.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid219.6 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid172.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid207.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid818.2 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid680.8 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)104.6 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1248.0 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid621.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid2133.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid461.8 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid477.7 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate247.0 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA125.2 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water60.5 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Chlorin E6CCC1=C(C)C2=N\C\1=C/C1=C(C)C(C(O)=O)=C(N1)\C(CC(O)=O)=C1/N=C(/C=C3\N/C(=C\2)C(C=C)=C3C)C(C)C1CCC(O)=O6019.3Standard polar33892256
Chlorin E6CCC1=C(C)C2=N\C\1=C/C1=C(C)C(C(O)=O)=C(N1)\C(CC(O)=O)=C1/N=C(/C=C3\N/C(=C\2)C(C=C)=C3C)C(C)C1CCC(O)=O2913.8Standard non polar33892256
Chlorin E6CCC1=C(C)C2=N\C\1=C/C1=C(C)C(C(O)=O)=C(N1)\C(CC(O)=O)=C1/N=C(/C=C3\N/C(=C\2)C(C=C)=C3C)C(C)C1CCC(O)=O5798.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Chlorin E6,1TMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5361.8Semi standard non polar33892256
Chlorin E6,1TMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5355.2Semi standard non polar33892256
Chlorin E6,1TMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5323.1Semi standard non polar33892256
Chlorin E6,1TMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5378.5Semi standard non polar33892256
Chlorin E6,1TMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5450.2Semi standard non polar33892256
Chlorin E6,2TMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5226.6Semi standard non polar33892256
Chlorin E6,2TMS,isomer #10C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5355.7Semi standard non polar33892256
Chlorin E6,2TMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5199.9Semi standard non polar33892256
Chlorin E6,2TMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5263.2Semi standard non polar33892256
Chlorin E6,2TMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5317.9Semi standard non polar33892256
Chlorin E6,2TMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5198.1Semi standard non polar33892256
Chlorin E6,2TMS,isomer #6C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5246.5Semi standard non polar33892256
Chlorin E6,2TMS,isomer #7C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5303.4Semi standard non polar33892256
Chlorin E6,2TMS,isomer #8C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5226.4Semi standard non polar33892256
Chlorin E6,2TMS,isomer #9C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5284.0Semi standard non polar33892256
Chlorin E6,3TMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5126.2Semi standard non polar33892256
Chlorin E6,3TMS,isomer #10C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5218.1Semi standard non polar33892256
Chlorin E6,3TMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5168.9Semi standard non polar33892256
Chlorin E6,3TMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5204.4Semi standard non polar33892256
Chlorin E6,3TMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5152.1Semi standard non polar33892256
Chlorin E6,3TMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5189.0Semi standard non polar33892256
Chlorin E6,3TMS,isomer #6C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5276.2Semi standard non polar33892256
Chlorin E6,3TMS,isomer #7C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5136.8Semi standard non polar33892256
Chlorin E6,3TMS,isomer #8C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5175.3Semi standard non polar33892256
Chlorin E6,3TMS,isomer #9C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5232.1Semi standard non polar33892256
Chlorin E6,4TMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5088.0Semi standard non polar33892256
Chlorin E6,4TMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C4493.3Standard non polar33892256
Chlorin E6,4TMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C6176.2Standard polar33892256
Chlorin E6,4TMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C5105.6Semi standard non polar33892256
Chlorin E6,4TMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C4494.4Standard non polar33892256
Chlorin E6,4TMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C)C3C6034.6Standard polar33892256
Chlorin E6,4TMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C5181.8Semi standard non polar33892256
Chlorin E6,4TMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C4511.7Standard non polar33892256
Chlorin E6,4TMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O)C3C6039.3Standard polar33892256
Chlorin E6,4TMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5169.7Semi standard non polar33892256
Chlorin E6,4TMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C4476.2Standard non polar33892256
Chlorin E6,4TMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C6012.0Standard polar33892256
Chlorin E6,4TMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5134.8Semi standard non polar33892256
Chlorin E6,4TMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C4536.4Standard non polar33892256
Chlorin E6,4TMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C)C(C)=C5CC)N4[Si](C)(C)C)C(CCC(=O)O[Si](C)(C)C)C3C5982.0Standard polar33892256
Chlorin E6,1TBDMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C(C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5576.1Semi standard non polar33892256
Chlorin E6,1TBDMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C(C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5583.9Semi standard non polar33892256
Chlorin E6,1TBDMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C(C)(C)C)C3C5558.5Semi standard non polar33892256
Chlorin E6,1TBDMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C(C)(C)C)C(CCC(=O)O)C3C5556.8Semi standard non polar33892256
Chlorin E6,1TBDMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C(C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5629.1Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #1C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C(C)(C)C)C4=C(C(=O)O[Si](C)(C)C(C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5610.0Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #10C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C(C)(C)C)C(C)=C5CC)N4[Si](C)(C)C(C)(C)C)C(CCC(=O)O)C3C5694.2Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #2C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C(C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C(C)(C)C)C3C5586.1Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #3C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C(C)(C)C)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C(C)(C)C)C(CCC(=O)O)C3C5633.6Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #4C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O[Si](C)(C)C(C)(C)C)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C(C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5679.7Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #5C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C(C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C(C)(C)C)C3C5596.7Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #6C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C(C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C(C)(C)C)C(CCC(=O)O)C3C5605.1Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #7C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O[Si](C)(C)C(C)(C)C)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C(C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O)C3C5668.8Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #8C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1[NH]2)C(C)=C5CC)N4[Si](C)(C)C(C)(C)C)C(CCC(=O)O[Si](C)(C)C(C)(C)C)C3C5592.2Semi standard non polar33892256
Chlorin E6,2TBDMS,isomer #9C=CC1=C(C)C2=CC3=NC(=C(CC(=O)O)C4=C(C(=O)O)C(C)=C(C=C5N=C(C=C1N2[Si](C)(C)C(C)(C)C)C(C)=C5CC)[NH]4)C(CCC(=O)O[Si](C)(C)C(C)(C)C)C3C5650.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (1 TMS) - 70eV, Positivesplash10-0fk9-4000029000-1916f13aab1af54a51522017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_1_5) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_5) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_6) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_7) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_8) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_9) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_2_10) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_5) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_6) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_7) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_8) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_9) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Chlorin E6 GC-MS (TMS_3_10) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 10V, Positive-QTOFsplash10-004i-0000090000-76b6689be6c4d3a5f6bf2019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 20V, Positive-QTOFsplash10-0m1i-0000090000-a9884390e2c6198835372019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 40V, Positive-QTOFsplash10-0a4l-1000490000-1158f121f2e6657e269c2019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 10V, Negative-QTOFsplash10-0udj-0000090000-309d598ff2cc9eae25cf2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 20V, Negative-QTOFsplash10-0k9x-0000290000-c4e6286ea5dbb980ea982019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 40V, Negative-QTOFsplash10-0a5l-3000790000-ba29e6db7e0e5c6474552019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 10V, Positive-QTOFsplash10-002b-0000090000-5df59745cedba7c846c92021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 20V, Positive-QTOFsplash10-0fv1-0000090000-d5bdd63827cc648964cc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 40V, Positive-QTOFsplash10-0a59-0000390000-092725730c296f9e7ea02021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 10V, Negative-QTOFsplash10-0a4i-0000090000-f5cddbfc3d1bb75d1b822021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 20V, Negative-QTOFsplash10-053r-0000190000-09a393148e193f1c72722021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Chlorin E6 40V, Negative-QTOFsplash10-0a4i-0000490000-26876924c13e276f38282021-10-12Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID21258230
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available