Hmdb loader
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2013-05-01 17:29:48 UTC
Update Date2021-09-14 14:58:38 UTC
HMDB IDHMDB0060043
Secondary Accession Numbers
  • HMDB60043
Metabolite Identification
Common Name13-HDoHE
Description13-HDoHE is an autoxidation product of docosahexaenoic acid DHA. 13-HDoHE is a long-chain polyunsaturated fatty acid that is any docosahexaenoic acid bearing a single hydroxy substituent. An oxidation product of docosahexaenoic acid metabolism. (CHEBI:72790)
Structure
Data?1563866009
SynonymsNot Available
Chemical FormulaC22H34O
Average Molecular Weight314.5048
Monoisotopic Molecular Weight314.26096571
IUPAC Name(3Z,6E,8E,12Z,15Z,18Z)-docosa-3,6,8,12,15,18-hexaen-10-ol
Traditional Name(3Z,6E,8E,12Z,15Z,18Z)-docosa-3,6,8,12,15,18-hexaen-10-ol
CAS Registry NumberNot Available
SMILES
CCC\C=C/C\C=C/C\C=C/CC(O)\C=C\C=C\C\C=C/CC
InChI Identifier
InChI=1S/C22H34O/c1-3-5-7-9-11-12-13-15-17-19-21-22(23)20-18-16-14-10-8-6-4-2/h6-9,12-14,16-20,22-23H,3-5,10-11,15,21H2,1-2H3/b8-6-,9-7-,13-12-,16-14+,19-17-,20-18+
InChI KeyWLJSEUMCVZZUTN-LZSWNSAASA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as long-chain fatty alcohols. These are fatty alcohols that have an aliphatic tail of 13 to 21 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty alcohols
Direct ParentLong-chain fatty alcohols
Alternative Parents
Substituents
  • Long chain fatty alcohol
  • Secondary alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00016 g/LALOGPS
logP6.81ALOGPS
logP6.84ChemAxon
logS-6.3ALOGPS
pKa (Strongest Acidic)17.72ChemAxon
pKa (Strongest Basic)-1.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity111.24 m³·mol⁻¹ChemAxon
Polarizability39.64 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+187.13131661259
DarkChem[M-H]-187.59231661259
DeepCCS[M+H]+180.8530932474
DeepCCS[M-H]-178.49230932474
DeepCCS[M-2H]-212.35230932474
DeepCCS[M+Na]+187.68630932474
AllCCS[M+H]+189.332859911
AllCCS[M+H-H2O]+186.332859911
AllCCS[M+NH4]+192.132859911
AllCCS[M+Na]+192.932859911
AllCCS[M-H]-185.232859911
AllCCS[M+Na-2H]-187.132859911
AllCCS[M+HCOO]-189.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
13-HDoHECCC\C=C/C\C=C/C\C=C/CC(O)\C=C\C=C\C\C=C/CC2964.3Standard polar33892256
13-HDoHECCC\C=C/C\C=C/C\C=C/CC(O)\C=C\C=C\C\C=C/CC2319.9Standard non polar33892256
13-HDoHECCC\C=C/C\C=C/C\C=C/CC(O)\C=C\C=C\C\C=C/CC2388.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
13-HDoHE,1TMS,isomer #1CC/C=C\C/C=C/C=C/C(C/C=C\C/C=C\C/C=C\CCC)O[Si](C)(C)C2510.1Semi standard non polar33892256
13-HDoHE,1TBDMS,isomer #1CC/C=C\C/C=C/C=C/C(C/C=C\C/C=C\C/C=C\CCC)O[Si](C)(C)C(C)(C)C2729.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 13-HDoHE GC-MS (Non-derivatized) - 70eV, Positivesplash10-03dv-1970000000-d474392327ab6ffa4ed92017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-HDoHE GC-MS (1 TMS) - 70eV, Positivesplash10-00di-9257000000-e97f512f8e23b77ecea92017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-HDoHE GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 10V, Positive-QTOFsplash10-00kb-1196000000-c509b73ca7ba03117b102017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 20V, Positive-QTOFsplash10-0002-4961000000-6eaace833487ffafd7b42017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 40V, Positive-QTOFsplash10-08g1-4940000000-b56a3ace892532bc45fe2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 10V, Negative-QTOFsplash10-03di-0019000000-b5a3c74a9058febac10a2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 20V, Negative-QTOFsplash10-03di-0359000000-d6a78cec793e1742f5f22017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 40V, Negative-QTOFsplash10-01ot-1940000000-c6b299b8aadb880f34ee2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 10V, Positive-QTOFsplash10-00kb-1193000000-7bf74b104dc6c83ffc442021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 20V, Positive-QTOFsplash10-014j-7980000000-f85cef683ea9e1d438342021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 40V, Positive-QTOFsplash10-014i-9520000000-b7a96b424374fce96ebc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 10V, Negative-QTOFsplash10-03di-0009000000-3c0cfc05b51d8114d83b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 20V, Negative-QTOFsplash10-03di-0449000000-2186c75a9e54494a4d092021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-HDoHE 40V, Negative-QTOFsplash10-00ai-1790000000-523719eb0333e1c6571d2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified0.000172 +/- 0.00004 uMAdult (>18 years old)BothNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131769803
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Quehenberger O, Armando AM, Brown AH, Milne SB, Myers DS, Merrill AH, Bandyopadhyay S, Jones KN, Kelly S, Shaner RL, Sullards CM, Wang E, Murphy RC, Barkley RM, Leiker TJ, Raetz CR, Guan Z, Laird GM, Six DA, Russell DW, McDonald JG, Subramaniam S, Fahy E, Dennis EA: Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res. 2010 Nov;51(11):3299-305. doi: 10.1194/jlr.M009449. Epub 2010 Jul 29. [PubMed:20671299 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.