| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2013-07-09 16:08:18 UTC |
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| Update Date | 2021-09-14 15:43:35 UTC |
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| HMDB ID | HMDB0060936 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | 2-trans-Hydroxycyclohexyl glyburide |
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| Description | 2-trans-Hydroxycyclohexyl glyburide is a metabolite of glyburide. Glibenclamide, also known as glyburide (USAN), is an antidiabetic drug in a class of medications known as sulfonylureas, closely related to sulfa drugs. It was developed in 1966 in a cooperative study between Boehringer Mannheim (now part of Roche) and Hoechst (now part of Sanofi-Aventis). (Wikipedia) |
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| Structure | COC1=C(C=C(Cl)C=C1)C(O)=NCCC1=CC=C(C=C1)S(=O)(=O)NC(O)=N[C@H]1CCCC[C@@H]1O InChI=1S/C23H28ClN3O6S/c1-33-21-11-8-16(24)14-18(21)22(29)25-13-12-15-6-9-17(10-7-15)34(31,32)27-23(30)26-19-4-2-3-5-20(19)28/h6-11,14,19-20,28H,2-5,12-13H2,1H3,(H,25,29)(H2,26,27,30)/t19-,20-/m0/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C23H28ClN3O6S |
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| Average Molecular Weight | 510.003 |
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| Monoisotopic Molecular Weight | 509.13873404 |
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| IUPAC Name | 5-chloro-N-(2-{4-[({[(1S,2S)-2-hydroxycyclohexyl]-C-hydroxycarbonimidoyl}amino)sulfonyl]phenyl}ethyl)-2-methoxybenzene-1-carboximidic acid |
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| Traditional Name | 5-chloro-N-{2-[4-({[(1S,2S)-2-hydroxycyclohexyl]-C-hydroxycarbonimidoyl}aminosulfonyl)phenyl]ethyl}-2-methoxybenzenecarboximidic acid |
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| CAS Registry Number | Not Available |
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| SMILES | COC1=C(C=C(Cl)C=C1)C(O)=NCCC1=CC=C(C=C1)S(=O)(=O)NC(O)=N[C@H]1CCCC[C@@H]1O |
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| InChI Identifier | InChI=1S/C23H28ClN3O6S/c1-33-21-11-8-16(24)14-18(21)22(29)25-13-12-15-6-9-17(10-7-15)34(31,32)27-23(30)26-19-4-2-3-5-20(19)28/h6-11,14,19-20,28H,2-5,12-13H2,1H3,(H,25,29)(H2,26,27,30)/t19-,20-/m0/s1 |
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| InChI Key | PASKIAZVROHUGZ-PMACEKPBSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as benzenesulfonamides. These are organic compounds containing a sulfonamide group that is S-linked to a benzene ring. |
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| Kingdom | Organic compounds |
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| Super Class | Benzenoids |
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| Class | Benzene and substituted derivatives |
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| Sub Class | Benzenesulfonamides |
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| Direct Parent | Benzenesulfonamides |
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| Alternative Parents | |
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| Substituents | - Benzenesulfonamide
- Benzenesulfonyl group
- Phenoxy compound
- Anisole
- Methoxybenzene
- Phenol ether
- Alkyl aryl ether
- Chlorobenzene
- Halobenzene
- Cyclohexanol
- Sulfonylurea
- Aryl chloride
- Aryl halide
- Cyclic alcohol
- Organosulfonic acid or derivatives
- Organic sulfonic acid or derivatives
- Sulfonyl
- Aminosulfonyl compound
- Secondary alcohol
- Carboximidic acid
- Carboximidic acid derivative
- Organic 1,3-dipolar compound
- Propargyl-type 1,3-dipolar organic compound
- Ether
- Organosulfur compound
- Organic oxygen compound
- Organic nitrogen compound
- Alcohol
- Hydrocarbon derivative
- Organic oxide
- Organopnictogen compound
- Organooxygen compound
- Organohalogen compound
- Organochloride
- Organonitrogen compound
- Aromatic homomonocyclic compound
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| Molecular Framework | Aromatic homomonocyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 3.4 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 13.9826 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.81 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 2325.6 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 217.7 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 196.4 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 184.6 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 168.8 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 575.4 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 647.6 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 99.5 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 1156.4 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 567.5 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1607.3 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 341.1 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 405.2 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 289.8 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 104.4 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 17.2 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| 2-trans-Hydroxycyclohexyl glyburide,1TMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(O)=N[C@H]2CCCC[C@@H]2O)C=C1)O[Si](C)(C)C | 4271.7 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,1TMS,isomer #2 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C)C=C1 | 4234.2 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,1TMS,isomer #3 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)NC(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)C=C1 | 4269.8 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,1TMS,isomer #4 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O)[Si](C)(C)C)C=C1 | 4229.3 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C)C=C1)O[Si](C)(C)C | 4109.5 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TMS,isomer #2 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)C=C1)O[Si](C)(C)C | 4102.8 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TMS,isomer #3 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O)[Si](C)(C)C)C=C1)O[Si](C)(C)C | 4047.0 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TMS,isomer #4 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)O[Si](C)(C)C)C=C1 | 4089.9 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TMS,isomer #5 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C)[Si](C)(C)C)C=C1 | 4067.9 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TMS,isomer #6 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1 | 4061.2 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)O[Si](C)(C)C)C=C1)O[Si](C)(C)C | 3983.1 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TMS,isomer #2 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C)[Si](C)(C)C)C=C1)O[Si](C)(C)C | 3962.1 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TMS,isomer #3 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)[Si](C)(C)C)C=C1)O[Si](C)(C)C | 3951.2 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TMS,isomer #4 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C)C=C1 | 3948.2 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,4TMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C)C=C1)O[Si](C)(C)C | 3890.2 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,4TMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C)C=C1)O[Si](C)(C)C | 3743.3 | Standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,4TMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C)C=C1)O[Si](C)(C)C | 5175.3 | Standard polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,1TBDMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(O)=N[C@H]2CCCC[C@@H]2O)C=C1)O[Si](C)(C)C(C)(C)C | 4485.3 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,1TBDMS,isomer #2 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C(C)(C)C)C=C1 | 4440.6 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,1TBDMS,isomer #3 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)NC(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C(C)(C)C)C=C1 | 4479.7 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,1TBDMS,isomer #4 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O)[Si](C)(C)C(C)(C)C)C=C1 | 4454.7 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TBDMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C(C)(C)C)C=C1)O[Si](C)(C)C(C)(C)C | 4493.9 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TBDMS,isomer #2 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C(C)(C)C)C=C1)O[Si](C)(C)C(C)(C)C | 4509.2 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TBDMS,isomer #3 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O)[Si](C)(C)C(C)(C)C)C=C1)O[Si](C)(C)C(C)(C)C | 4483.4 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TBDMS,isomer #4 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C=C1 | 4506.4 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TBDMS,isomer #5 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C1 | 4477.1 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,2TBDMS,isomer #6 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C1 | 4512.8 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TBDMS,isomer #1 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)NC(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C=C1)O[Si](C)(C)C(C)(C)C | 4541.6 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TBDMS,isomer #2 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C1)O[Si](C)(C)C(C)(C)C | 4570.1 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TBDMS,isomer #3 | COC1=CC=C(Cl)C=C1C(=NCCC1=CC=C(S(=O)(=O)N(C(O)=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C1)O[Si](C)(C)C(C)(C)C | 4570.7 | Semi standard non polar | 33892256 | | 2-trans-Hydroxycyclohexyl glyburide,3TBDMS,isomer #4 | COC1=CC=C(Cl)C=C1C(O)=NCCC1=CC=C(S(=O)(=O)N(C(=N[C@H]2CCCC[C@@H]2O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C1 | 4571.2 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide GC-MS (Non-derivatized) - 70eV, Positive | splash10-044j-5914400000-74027cc2d84983f5b100 | 2017-09-20 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide GC-MS (2 TMS) - 70eV, Positive | splash10-0083-9145007000-fdaa184a50e7606cd112 | 2017-10-06 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 10V, Positive-QTOF | splash10-0296-0309640000-253e0cab350178fcf88f | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 20V, Positive-QTOF | splash10-02ta-3904000000-655eff0643051fab9cc5 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 40V, Positive-QTOF | splash10-01ox-3900000000-9311ea9e5562fdcfd180 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 10V, Negative-QTOF | splash10-0a4i-0509580000-bbebd055d7a637a097ff | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 20V, Negative-QTOF | splash10-014l-1319000000-c3b08f627ec04c23e73e | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 40V, Negative-QTOF | splash10-029x-4915000000-e015795ea00e4d6726ea | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 10V, Positive-QTOF | splash10-03di-1901030000-0ac88a38ffced26ef102 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 20V, Positive-QTOF | splash10-014i-0319000000-fdd8f5454e902fdfff02 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 40V, Positive-QTOF | splash10-00di-0931000000-0a532c77c4d5e94d1ee7 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 10V, Negative-QTOF | splash10-0a4i-1203390000-f624b3ede39aa1687b7d | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 20V, Negative-QTOF | splash10-001i-9000000000-39ead41d6103415b26fe | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2-trans-Hydroxycyclohexyl glyburide 40V, Negative-QTOF | splash10-001i-9413000000-a460b6401982204be7d6 | 2021-10-12 | Wishart Lab | View Spectrum |
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