Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2014-10-08 15:54:42 UTC
Update Date2022-03-07 03:17:46 UTC
HMDB IDHMDB0061795
Secondary Accession Numbers
  • HMDB61795
Metabolite Identification
Common Name(S)-3,7-Dimethyl-1,6-octadiene
Description(S)-3,7-Dimethyl-1,6-octadiene, also known as beta-citronellene, belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle (S)-3,7-Dimethyl-1,6-octadiene is possibly neutral.
Structure
Data?1563866232
Synonyms
ValueSource
beta-CitronelleneHMDB
CitronelleneHMDB
Chemical FormulaC10H18
Average Molecular Weight138.2499
Monoisotopic Molecular Weight138.140850576
IUPAC Name(3S)-3,7-dimethylocta-1,6-diene
Traditional Name(S)-linalol
CAS Registry NumberNot Available
SMILES
[H][C@](C)(CCC=C(C)C)C=C
InChI Identifier
InChI=1S/C10H18/c1-5-10(4)8-6-7-9(2)3/h5,7,10H,1,6,8H2,2-4H3/t10-/m1/s1
InChI KeyFUDNBFMOXDUIIE-SNVBAGLBSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentAcyclic monoterpenoids
Alternative Parents
Substituents
  • Acyclic monoterpenoid
  • Branched unsaturated hydrocarbon
  • Alkadiene
  • Unsaturated aliphatic hydrocarbon
  • Unsaturated hydrocarbon
  • Olefin
  • Acyclic olefin
  • Hydrocarbon
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.026 g/LALOGPS
logP4.7ALOGPS
logP3.88ChemAxon
logS-3.7ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity48.6 m³·mol⁻¹ChemAxon
Polarizability18.41 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+132.61931661259
DarkChem[M-H]-132.34231661259
DeepCCS[M+H]+136.38830932474
DeepCCS[M-H]-133.89330932474
DeepCCS[M-2H]-169.65230932474
DeepCCS[M+Na]+144.11130932474
AllCCS[M+H]+132.332859911
AllCCS[M+H-H2O]+128.232859911
AllCCS[M+NH4]+136.332859911
AllCCS[M+Na]+137.432859911
AllCCS[M-H]-132.732859911
AllCCS[M+Na-2H]-135.032859911
AllCCS[M+HCOO]-137.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(S)-3,7-Dimethyl-1,6-octadiene[H][C@](C)(CCC=C(C)C)C=C1171.1Standard polar33892256
(S)-3,7-Dimethyl-1,6-octadiene[H][C@](C)(CCC=C(C)C)C=C971.4Standard non polar33892256
(S)-3,7-Dimethyl-1,6-octadiene[H][C@](C)(CCC=C(C)C)C=C949.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene GC-MS (Non-derivatized) - 70eV, Positivesplash10-0api-9100000000-1ade221501ac489c640c2017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 10V, Positive-QTOFsplash10-000i-3900000000-e5089b26717827085a2e2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 20V, Positive-QTOFsplash10-0019-9600000000-c543bc9b9d37790c4ff72016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 40V, Positive-QTOFsplash10-0le9-9000000000-0ff53861ce83374ca0142016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 10V, Negative-QTOFsplash10-000i-0900000000-531bc859a0df233afb582016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 20V, Negative-QTOFsplash10-000i-1900000000-c283d41ea4bef4f573b32016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 40V, Negative-QTOFsplash10-0avr-9500000000-0c66b91fd8b0006270dc2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 10V, Negative-QTOFsplash10-000i-0900000000-005b492eed114057487d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 20V, Negative-QTOFsplash10-000i-0900000000-d1e5a5f4558610c7bee22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 40V, Negative-QTOFsplash10-014i-9400000000-d414f6faa15025a4c8652021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 10V, Positive-QTOFsplash10-001i-9000000000-42a79948b3a11493bc4f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 20V, Positive-QTOFsplash10-00lr-9000000000-b559503033be06c1830e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,7-Dimethyl-1,6-octadiene 40V, Positive-QTOFsplash10-066u-9000000000-8b2abae2af2494a146a52021-09-22Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Feces
  • Saliva
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal
details
SalivaDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Not SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10887985
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Meesters RJ, Duisken M, Hollender J: Study on the cytochrome P450-mediated oxidative metabolism of the terpene alcohol linalool: indication of biological epoxidation. Xenobiotica. 2007 Jun;37(6):604-17. [PubMed:17614007 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.