Legend: enzyme field
| Version | 2.5 | ||||||||||||||||||||||||||||
| Creation Date | 2005-11-16 15:48:42 | ||||||||||||||||||||||||||||
| Update Date | 2011-06-15 12:35:55 | ||||||||||||||||||||||||||||
| Accession Number | HMDB00691 | ||||||||||||||||||||||||||||
| Secondary Accession Numbers | Not Available | ||||||||||||||||||||||||||||
| Common Name | Malonic acid | ||||||||||||||||||||||||||||
| Description | Malonic acid (IUPAC systematic name: propanedioic acid) is a dicarboxylic acid with structure CH2(COOH)2. The ionised form of malonic acid, as well as its esters and salts, are known as malonates. For example, diethyl malonate is malonic acid's ethyl ester. The name originates from Latin malum, meaning apple. Malonic acid is the archetypal example of a competitive inhibitor: it acts against succinate dehydrogenase (complex II) in the respiratory electron transport chain. | ||||||||||||||||||||||||||||
| Synonyms |
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| Chemical IUPAC Name | propanedioic acid | ||||||||||||||||||||||||||||
| Chemical Formula | C3H4O4 | ||||||||||||||||||||||||||||
| Chemical Structure | |||||||||||||||||||||||||||||
| Chemical Taxonomy |
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| Average Molecular Weight | 104.062 | ||||||||||||||||||||||||||||
| Monoisotopic Molecular Weight | 104.010956 | ||||||||||||||||||||||||||||
| Isomeric SMILES | OC(=O)CC(O)=O | ||||||||||||||||||||||||||||
| Canonical SMILES | OC(=O)CC(O)=O | ||||||||||||||||||||||||||||
| KEGG Compound ID | C00383 ![]() |
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| BioCyc ID | MALONATE ![]() |
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| BiGG ID | Not Available | ||||||||||||||||||||||||||||
| Wikipedia Link | Malonic acid ![]() |
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| NuGOwiki Link | HMDB00691 ![]() |
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| Metagene Link | HMDB00691 ![]() |
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| METLIN ID | 3237 ![]() |
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| PubChem Compound | 867 ![]() |
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| PubChem Substance | 828492 ![]() |
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| ChEBI ID | 30794 ![]() |
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| CAS Registry Number | 141-82-2 | ||||||||||||||||||||||||||||
| InChI Identifier | InChI=1/C3H4O4/c4-2(5)1-3(6)7/h1H2,(H,4,5)(H,6,7) | ||||||||||||||||||||||||||||
| Synthesis Reference | Behr, Arno; Botulinski, Andreas; Carduck, Franz Josef; Schneider, Michael. Process for preparation of malonic acid. Ger. Offen. (1992), 4 pp. | ||||||||||||||||||||||||||||
| Melting Point (Experimental) | 135 oC | ||||||||||||||||||||||||||||
| Experimental Water Solubility | 763.0 mg/mL [YALKOWSKY,SH & DANNENFELSER,RM (1992)] Source: PhysProp | ||||||||||||||||||||||||||||
| Predicted Water Solubility | 197.0 mg/mL [Predicted by ALOGPS] Calculated using ALOGPS | ||||||||||||||||||||||||||||
| Physiological Charge | -2 | ||||||||||||||||||||||||||||
| State | Solid | ||||||||||||||||||||||||||||
| Experimental LogP/Hydrophobicity | -0.81 [HANSCH,C ET AL. (1995)] Source: PhysProp | ||||||||||||||||||||||||||||
| Predicted LogP/Hydrophobicity | -0.60 [Predicted by ALOGPS]; -0.3 [Predicted by PubChem via XLOGP] Calculated using ALOGPS | ||||||||||||||||||||||||||||
| Material Safety Data Sheet (MSDS) | |||||||||||||||||||||||||||||
| MOL File | Show ![]() |
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| SDF File | Show ![]() |
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| PDB File | Show ![]() |
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| 2D Structure | |||||||||||||||||||||||||||||
| 3D Structure | |||||||||||||||||||||||||||||
| Experimental PDB ID | 1NU4 ![]() |
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| Experimental PDB File | Show | ||||||||||||||||||||||||||||
| Experimental PDB Structure | |||||||||||||||||||||||||||||
| Experimental 1H NMR Spectrum | Download Spectrum Download FID (Varian) Show Experimental Conditions ![]() |
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| Experimental 13C NMR Spectrum | Download Spectrum Download FID (Bruker) Show Experimental Conditions ![]() |
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| Experimental 13C HSQC Spectrum | Download Spectrum Download FID (Bruker) Show Experimental Conditions ![]() |
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| Predicted 1H NMR Spectrum |
Show Image Show Peaklist |
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| Predicted 13C NMR Spectrum |
Show Image Show Peaklist |
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| Mass Spectrum |
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| Simplified TOCSY Spectrum | Not Available | ||||||||||||||||||||||||||||
| BMRB Spectrum | Not Available | ||||||||||||||||||||||||||||
| Cellular Location |
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| Biofluid Location |
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| Tissue Location | Not Available | ||||||||||||||||||||||||||||
| Concentrations (Normal) |
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| Concentrations (Abnormal) |
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| Associated Disorders |
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| OMIM ID |
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| Pathways |
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| General References |
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| Metabolic Enzymes |
| Enzyme 1 [top] | |||||||
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| Enzyme 1 ID | 5480 | ||||||
| Enzyme 1 Name | 4-aminobutyrate aminotransferase, mitochondrial | ||||||
| Enzyme 1 Synonyms |
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| Enzyme 1 Gene Name | ABAT | ||||||
| Enzyme 1 Protein Sequence |
>4-aminobutyrate aminotransferase, mitochondrial
MASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMK QLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQ NASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYR SKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG DNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMM TGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLL DLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVF RDHHAHLFLNIFSDILADFK |
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| Enzyme 1 Number of Residues | 500 | ||||||
| Enzyme 1 Molecular Weight | 56438.4 | ||||||
| Enzyme 1 Theoretical pI | 8.04 | ||||||
| Enzyme 1 GO Classification |
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| Enzyme 1 General Function | Involved in 4-aminobutyrate transaminase activity | ||||||
| Enzyme 1 Specific Function | Catalyzes the conversion of gamma-aminobutyrate and L- beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine | ||||||
| Enzyme 1 Pathways |
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| Enzyme 1 Reactions |
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| Enzyme 1 Pfam Domain Function |
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| Enzyme 1 Signals |
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| Enzyme 1 Transmembrane Regions |
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| Enzyme 1 Essentiality | Not Available | ||||||
| Enzyme 1 GenBank ID Protein | 158254434 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot ID | P80404 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot Entry Name | GABT_HUMAN ![]() |
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| Enzyme 1 PDB ID | 1OHY ![]() |
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| Enzyme 1 PDB File | Show | ||||||
| Enzyme 1 3D Structure | |||||||
| Enzyme 1 Cellular Location | Not Available | ||||||
| Enzyme 1 Gene Sequence |
>1503 bp
ATGGCCTCCATGTTGCTCGCCCAGCGCCTGGCCTGCAGCTTCCAGCACAGCTACCGCCTG CTGGTGCCTGGATCCAGACACATTAGTCAAGCTGCAGCCAAAGTCGACGTTGAATTTGAT TATGATGGGCCTCTGATGAAGACGGAAGTCCCAGGGCCTAGATCTCAGGAGTTAATGAAA CAGCTGAATATAATTCAGAATGCAGAGGCTGTGCATTTTTTCTGCAATTACGAAGAGAGC CGAGGCAATTACCTGGTTGATGTGGACGGCAACCGAATGCTGGATCTTTATTCCCAGATC TCCTCTGTTCCCATAGGTTACAGCCACCCCGCCCTGCTGAAACTCATCCAACAGCCTCAA AATGCGAGCATGTTTGTCAACAGACCCGCCCTCGGAATCCTGCCTCCGGAGAACTTTGTG GAGAAGCTCCGGCAGTCCTTGCTCTCGGTGGCTCCCAAAGGGATGTCCCAGCTCATCACC ATGGCCTGCGGCTCCTGCTCCAATGAAAACGCCTTAAAGACCATCTTCATGTGGTACCGG AGCAAGGAAAGAGGGCAGAGGGGCTTCTCCCAGGAGGAGCTGGAGACGTGCATGATTAAC CAGGCCCCTGGCTGCCCCGACTACAGCATCCTCTCCTTCATGGGCGCGTTCCATGGGAGG ACCATGGGTTGCTTAGCGACCACGCACTCTAAAGCCATTCACAAGATCGACATCCCTTCC TTTGACTGGCCCATCGCACCGTTCCCACGGCTGAAATACCCTCTGGAAGAGTTTGTGAAA GAGAACCAACAGGAGGAGGCCCGCTGTCTGGAAGAGGTGGAGGATCTGATTGTGAAATAT CGGAAAAAGAAGAAGACGGTGGCCGGGATCATCGTGGAGCCCATCCAGTCCGAGGGTGGA GACAACCACGCATCCGATGACTTCTTTCGGAAGCTGAGAGACATCGCCAGGAAGCATGGC TGCGCCTTCTTGGTGGACGAGGTACAGACCGGAGGAGGCTGCACGGGCAAGTTCTGGGCC CATGAGCACTGGGGCCTGGATGACCCAGCAGACGTGATGACCTTCAGCAAGAAGATGATG ACTGGGGGCTTCTTCCACAAGGAGGAGTTCAGGCCTAATGCTCCCTACCGGATCTTCAAC ACCTGGCTGGGGGACCCGTCCAAGAACCTGTTGCTGGCTGAGGTCATCAACATCATCAAG CGGGAGGACCTGCTAAATAATGCAGCCCATGCCGGGAAGGCCCTGCTCACAGGACTGCTG GACCTCCAGGCCCGGTACCCCCAGTTCATCAGCAGGGTGAGAGGACGAGGCACCTTTTGC TCCTTCGATACTCCCGATGATTCCATACGGAATAAGCTCATTTTAATTGCCAGAAACAAA GGTGTGGTGTTGGGTGGCTGTGGTGACAAATCCATTCGTTTCCGTCCCACGCTGGTCTTC AGGGATCACCACGCTCACCTGTTCCTCAATATTTTCAGTGACATCTTAGCAGACTTCAAG TAA |
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| Enzyme 1 GenBank Gene ID | AK290501 ![]() |
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| Enzyme 1 GeneCard ID | ABAT ![]() |
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| Enzyme 1 GenAtlas ID | ABAT ![]() |
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| Enzyme 1 HGNC ID | HGNC:23 ![]() |
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| Enzyme 1 Chromosome Location | 1 | ||||||
| Enzyme 1 Locus | 16p13.2 | ||||||
| Enzyme 1 SNPs | SNPJam Report ![]() |
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| Enzyme 1 General References |
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| Enzyme 1 Metabolite References | Not Available | ||||||
| Enzyme 2 [top] | |||||||
| Enzyme 2 ID | 12979 | ||||||
| Enzyme 2 Name | cDNA FLJ75643, highly similar to Homo sapiens 4-aminobutyrate aminotransferase | ||||||
| Enzyme 2 Synonyms |
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| Enzyme 2 Gene Name | Not Available | ||||||
| Enzyme 2 Protein Sequence |
>cDNA FLJ75643, highly similar to Homo sapiens 4-aminobutyrate aminotransferase
MASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMK QLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQ NASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYR SKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG DNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMM TGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLL DLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVF RDHHAHLFLNIFSDILADFK |
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| Enzyme 2 Number of Residues | 500 | ||||||
| Enzyme 2 Molecular Weight | 56440 | ||||||
| Enzyme 2 Theoretical pI | 8.04 | ||||||
| Enzyme 2 GO Classification | Not Available | ||||||
| Enzyme 2 General Function | Amino acid transport and metabolism | ||||||
| Enzyme 2 Specific Function | Not Available | ||||||
| Enzyme 2 Pathways | Not Available | ||||||
| Enzyme 2 Reactions | Not Available | ||||||
| Enzyme 2 Pfam Domain Function | Not Available | ||||||
| Enzyme 2 Signals |
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| Enzyme 2 Transmembrane Regions |
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| Enzyme 2 Essentiality | Not Available | ||||||
| Enzyme 2 GenBank ID Protein | 158254434 ![]() |
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| Enzyme 2 UniProtKB/Swiss-Prot ID | A8K386 ![]() |
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| Enzyme 2 UniProtKB/Swiss-Prot Entry Name | A8K386_HUMAN ![]() |
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| Enzyme 2 PDB ID | 1OHY ![]() |
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| Enzyme 2 PDB File | Show | ||||||
| Enzyme 2 3D Structure | |||||||
| Enzyme 2 Cellular Location | Not Available | ||||||
| Enzyme 2 Gene Sequence | Not Available | ||||||
| Enzyme 2 GenBank Gene ID | AK290501 ![]() |
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| Enzyme 2 GeneCard ID | A8K386 ![]() |
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| Enzyme 2 GenAtlas ID | Not Available | ||||||
| Enzyme 2 HGNC ID | Not Available | ||||||
| Enzyme 2 Chromosome Location | Not Available | ||||||
| Enzyme 2 Locus | Not Available | ||||||
| Enzyme 2 SNPs | Not Available | ||||||
| Enzyme 2 General References | Not Available | ||||||
| Enzyme 2 Metabolite References | Not Available | ||||||