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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2017-08-01 02:12:43 UTC
Update Date2022-03-07 03:18:00 UTC
HMDB IDHMDB0094652
Secondary Accession Numbers
  • HMDB94652
Metabolite Identification
Common Name2-Octene, 3,7-dimethyl-, (Z)-
Description2-octene, 3,7-dimethyl-, (z)- is classified as a member of the branched unsaturated hydrocarbons. Branched unsaturated hydrocarbons are hydrocarbons that contains one or more unsaturated carbon atoms, and an aliphatic branch. 2-octene, 3,7-dimethyl-, (z)- can be found in feces.
Structure
Data?1563871213
SynonymsNot Available
Chemical FormulaC10H20
Average Molecular Weight140.27
Monoisotopic Molecular Weight140.156500644
IUPAC Name(2E)-3,7-dimethyloct-2-ene
Traditional Name(2E)-3,7-dimethyloct-2-ene
CAS Registry NumberNot Available
SMILES
[H]\C(C)=C(\C)CCCC(C)C
InChI Identifier
InChI=1S/C10H20/c1-5-10(4)8-6-7-9(2)3/h5,9H,6-8H2,1-4H3/b10-5+
InChI KeyADGIRGGMVLTMJM-BJMVGYQFSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as branched unsaturated hydrocarbons. These are hydrocarbons that contains one or more unsaturated carbon atoms, and an aliphatic branch.
KingdomOrganic compounds
Super ClassHydrocarbons
ClassUnsaturated hydrocarbons
Sub ClassBranched unsaturated hydrocarbons
Direct ParentBranched unsaturated hydrocarbons
Alternative Parents
Substituents
  • Branched unsaturated hydrocarbon
  • Unsaturated aliphatic hydrocarbon
  • Olefin
  • Alkene
  • Acyclic olefin
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP5.19ALOGPS
logP4.19ChemAxon
logS-3.4ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity48.56 m³·mol⁻¹ChemAxon
Polarizability19.28 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+136.41331661259
DarkChem[M-H]-132.72631661259
DeepCCS[M+H]+145.82530932474
DeepCCS[M-H]-143.42230932474
DeepCCS[M-2H]-178.89230932474
DeepCCS[M+Na]+153.49230932474
AllCCS[M+H]+134.932859911
AllCCS[M+H-H2O]+130.832859911
AllCCS[M+NH4]+138.832859911
AllCCS[M+Na]+139.932859911
AllCCS[M-H]-138.432859911
AllCCS[M+Na-2H]-140.932859911
AllCCS[M+HCOO]-143.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
2-Octene, 3,7-dimethyl-, (Z)-[H]\C(C)=C(\C)CCCC(C)C1233.2Standard polar33892256
2-Octene, 3,7-dimethyl-, (Z)-[H]\C(C)=C(\C)CCCC(C)C972.0Standard non polar33892256
2-Octene, 3,7-dimethyl-, (Z)-[H]\C(C)=C(\C)CCCC(C)C962.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a6u-9100000000-a7fc0172d10e002542862017-09-14Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 10V, Negative-QTOFsplash10-000i-0900000000-96358be195417076cc042017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 20V, Negative-QTOFsplash10-000i-0900000000-3b7d906ff3ee5832cfed2017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 40V, Negative-QTOFsplash10-0abi-8900000000-695d46ed93f40f25e57c2017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 10V, Positive-QTOFsplash10-0006-1900000000-fb4f498e6897ba6581e42017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 20V, Positive-QTOFsplash10-052f-9500000000-92ed15ff3a3e043616b12017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 40V, Positive-QTOFsplash10-0a4i-9000000000-d166f77e8bc175bee1ac2017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 10V, Negative-QTOFsplash10-000i-0900000000-61228056f9f6f21ecfb62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 20V, Negative-QTOFsplash10-000i-0900000000-96cf30242e3951d5f7b52021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 40V, Negative-QTOFsplash10-0301-9600000000-4d1dec6089a01d4168392021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 10V, Positive-QTOFsplash10-05gu-9000000000-5ba2ef33f906650f2ea72021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 20V, Positive-QTOFsplash10-0awl-9000000000-c68b48d1deedd5c8ac4a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Octene, 3,7-dimethyl-, (Z)- 40V, Positive-QTOFsplash10-052f-9000000000-6e77c53d2e551f6442852021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Feces
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Female
Normal
details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Female
Nonalcoholic fatty liver disease
details
Associated Disorders and Diseases
Disease References
Nonalcoholic fatty liver disease
  1. Raman M, Ahmed I, Gillevet PM, Probert CS, Ratcliffe NM, Smith S, Greenwood R, Sikaroodi M, Lam V, Crotty P, Bailey J, Myers RP, Rioux KP: Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease. Clin Gastroenterol Hepatol. 2013 Jul;11(7):868-75.e1-3. doi: 10.1016/j.cgh.2013.02.015. Epub 2013 Feb 27. [PubMed:23454028 ]
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5352959
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available