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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2017-08-02 20:48:53 UTC

Update Date

2022-03-07 03:18:03 UTC

HMDB ID

HMDB0094795

Secondary Accession Numbers

HMDB94795

Metabolite Identification

Common Name

4,5-octadienoylglycine

Description

4,5-octadienoylglycine belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom. Based on a literature review very few articles have been published on 4,5-octadienoylglycine.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0094795
     RDKit          3D
4,5-octadienoylglycine
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.4126   -0.0081    0.0484 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0857    1.4535    0.0145 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8337    1.7088   -0.6854 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9600    0.7242   -0.6796 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1102   -0.2712   -0.5230 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.2149    0.6558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8234   -1.2823    0.6080 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7043   -1.1275   -0.5557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0965   -1.2049   -1.8249 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9572   -0.9311   -0.5359 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7982   -0.8154    0.6057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8755    0.1837    0.2760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7308    0.4471    1.1303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9399    0.8174   -0.9529 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4782   -0.6007    0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9284   -0.3426   -0.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1101   -0.2036    0.8874 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9090    1.9512   -0.5780 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1426    1.9244    1.0201 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4999    2.5648   -1.2052 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1713   -0.9799   -1.2999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2868    0.7673    0.6562 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7790   -0.2681    1.6215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3022   -2.2835    0.6133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3827   -1.2063    1.5611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1057   -0.3200   -2.3538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3452   -1.7874    0.7339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3099   -0.5376    1.5373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0329    1.8426   -0.9905 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  5 21  1  0
  6 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
 11 27  1  0
 11 28  1  0
 14 29  1  0
M  END


  Mrv1652308021722482D          

 14 13  0  0  0  0            999 V2000
    5.3625    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5375    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1250    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  4  2  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  8  1  4  0  0  0
 11  9  2  0  0  0  0
 12  9  1  0  0  0  0
 13 10  2  0  0  0  0
 14 10  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0094795

> <DATABASE_NAME>
hmdb

> <SMILES>
CCC=C=CCCC(O)=NCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H15NO3/c1-2-3-4-5-6-7-9(12)11-8-10(13)14/h3,5H,2,6-8H2,1H3,(H,11,12)(H,13,14)

> <INCHI_KEY>
LOPZOUPNQQOYPL-UHFFFAOYSA-N

> <FORMULA>
C10H15NO3

> <MOLECULAR_WEIGHT>
197.234

> <EXACT_MASS>
197.105193347

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
21.58330241944632

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1-hydroxyocta-4,5-dien-1-ylidene)amino]acetic acid

> <ALOGPS_LOGP>
1.73

> <JCHEM_LOGP>
1.7373500997530047

> <ALOGPS_LOGS>
-2.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
5.96995078770505

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.812611251840548

> <JCHEM_PKA_STRONGEST_BASIC>
1.9210020021121794

> <JCHEM_POLAR_SURFACE_AREA>
69.89

> <JCHEM_REFRACTIVITY>
54.39810000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.87e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1-hydroxyocta-4,5-dien-1-ylidene)amino]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0094795
     RDKit          3D
4,5-octadienoylglycine
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.4126   -0.0081    0.0484 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0857    1.4535    0.0145 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8337    1.7088   -0.6854 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9600    0.7242   -0.6796 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1102   -0.2712   -0.5230 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.2149    0.6558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8234   -1.2823    0.6080 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7043   -1.1275   -0.5557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0965   -1.2049   -1.8249 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9572   -0.9311   -0.5359 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7982   -0.8154    0.6057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8755    0.1837    0.2760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7308    0.4471    1.1303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9399    0.8174   -0.9529 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4782   -0.6007    0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9284   -0.3426   -0.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1101   -0.2036    0.8874 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9090    1.9512   -0.5780 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1426    1.9244    1.0201 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4999    2.5648   -1.2052 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1713   -0.9799   -1.2999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2868    0.7673    0.6562 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7790   -0.2681    1.6215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3022   -2.2835    0.6133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3827   -1.2063    1.5611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1057   -0.3200   -2.3538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3452   -1.7874    0.7339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3099   -0.5376    1.5373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0329    1.8426   -0.9905 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  5 21  1  0
  6 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
 11 27  1  0
 11 28  1  0
 14 29  1  0
M  END

HEADER    PROTEIN                                 02-AUG-17   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-AUG-17         0                                  
HETATM    1  C   UNK     0      10.010   4.001   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.470   4.001   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.700   2.667   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.160   2.667   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.310  -1.334   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0       2.310  -1.334   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -3.080  -2.667   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -3.080   0.000   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    9                                                       
CONECT    8   10   11                                                       
CONECT    9    7   11   12                                                  
CONECT   10    8   13   14                                                  
CONECT   11    8    9                                                       
CONECT   12    9                                                            
CONECT   13   10                                                            
CONECT   14   10                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

COMPND    HMDB0094795
HETATM    1  C1  UNL     1       4.413  -0.008   0.048  1.00  0.00           C  
HETATM    2  C2  UNL     1       4.086   1.453   0.014  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.834   1.709  -0.685  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.960   0.724  -0.680  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.110  -0.271  -0.523  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.270  -0.215   0.656  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.823  -1.282   0.608  1.00  0.00           C  
HETATM    8  C8  UNL     1      -1.704  -1.127  -0.556  1.00  0.00           C  
HETATM    9  O1  UNL     1      -1.097  -1.205  -1.825  1.00  0.00           O  
HETATM   10  N1  UNL     1      -2.957  -0.931  -0.536  1.00  0.00           N  
HETATM   11  C9  UNL     1      -3.798  -0.815   0.606  1.00  0.00           C  
HETATM   12  C10 UNL     1      -4.875   0.184   0.276  1.00  0.00           C  
HETATM   13  O2  UNL     1      -5.731   0.447   1.130  1.00  0.00           O  
HETATM   14  O3  UNL     1      -4.940   0.817  -0.953  1.00  0.00           O  
HETATM   15  H1  UNL     1       3.478  -0.601   0.219  1.00  0.00           H  
HETATM   16  H2  UNL     1       4.928  -0.343  -0.883  1.00  0.00           H  
HETATM   17  H3  UNL     1       5.110  -0.204   0.887  1.00  0.00           H  
HETATM   18  H4  UNL     1       4.909   1.951  -0.578  1.00  0.00           H  
HETATM   19  H5  UNL     1       4.143   1.924   1.020  1.00  0.00           H  
HETATM   20  H6  UNL     1       2.500   2.565  -1.205  1.00  0.00           H  
HETATM   21  H7  UNL     1       1.171  -0.980  -1.300  1.00  0.00           H  
HETATM   22  H8  UNL     1      -0.287   0.767   0.656  1.00  0.00           H  
HETATM   23  H9  UNL     1       0.779  -0.268   1.622  1.00  0.00           H  
HETATM   24  H10 UNL     1      -0.302  -2.284   0.613  1.00  0.00           H  
HETATM   25  H11 UNL     1      -1.383  -1.206   1.561  1.00  0.00           H  
HETATM   26  H12 UNL     1      -1.106  -0.320  -2.354  1.00  0.00           H  
HETATM   27  H13 UNL     1      -4.345  -1.787   0.734  1.00  0.00           H  
HETATM   28  H14 UNL     1      -3.310  -0.538   1.537  1.00  0.00           H  
HETATM   29  H15 UNL     1      -5.033   1.843  -0.990  1.00  0.00           H  
CONECT    1    2   15   16   17
CONECT    2    3   18   19
CONECT    3    4    4   20
CONECT    4    5    5
CONECT    5    6   21
CONECT    6    7   22   23
CONECT    7    8   24   25
CONECT    8    9   10   10
CONECT    9   26
CONECT   10   11
CONECT   11   12   27   28
CONECT   12   13   13   14
CONECT   14   29
END

HMDB0094795
     RDKit          3D
4,5-octadienoylglycine
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.4126   -0.0081    0.0484 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0857    1.4535    0.0145 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8337    1.7088   -0.6854 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9600    0.7242   -0.6796 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1102   -0.2712   -0.5230 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.2149    0.6558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8234   -1.2823    0.6080 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7043   -1.1275   -0.5557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0965   -1.2049   -1.8249 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9572   -0.9311   -0.5359 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7982   -0.8154    0.6057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8755    0.1837    0.2760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7308    0.4471    1.1303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9399    0.8174   -0.9529 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4782   -0.6007    0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9284   -0.3426   -0.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1101   -0.2036    0.8874 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9090    1.9512   -0.5780 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1426    1.9244    1.0201 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4999    2.5648   -1.2052 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1713   -0.9799   -1.2999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2868    0.7673    0.6562 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7790   -0.2681    1.6215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3022   -2.2835    0.6133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3827   -1.2063    1.5611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1057   -0.3200   -2.3538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3452   -1.7874    0.7339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3099   -0.5376    1.5373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0329    1.8426   -0.9905 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  5 21  1  0
  6 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
 11 27  1  0
 11 28  1  0
 14 29  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
2-[(1-Hydroxyocta-4,5-dien-1-ylidene)amino]acetate	HMDB

Chemical Formula

C₁₀H₁₅NO₃

Average Molecular Weight

197.234

Monoisotopic Molecular Weight

197.105193347

IUPAC Name

2-[(1-hydroxyocta-4,5-dien-1-ylidene)amino]acetic acid

Traditional Name

[(1-hydroxyocta-4,5-dien-1-ylidene)amino]acetic acid

CAS Registry Number

Not Available

SMILES

CCC=C=CCCC(O)=NCC(O)=O

InChI Identifier

InChI=1S/C10H15NO3/c1-2-3-4-5-6-7-9(12)11-8-10(13)14/h3,5H,2,6-8H2,1H3,(H,11,12)(H,13,14)

InChI Key

LOPZOUPNQQOYPL-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids

Alternative Parents

Substituents

N-acyl-alpha-amino acid
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carbonyl group
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Urine (PMID: 20971021)

Source

Exogenous

Exogenous (HMDB: HMDB0094795)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	1.73	ALOGPS
logP	1.74	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	3.81	ChemAxon
pKa (Strongest Basic)	1.92	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	69.89 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	54.4 m³·mol⁻¹	ChemAxon
Polarizability	21.58 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	150.003	31661259
DarkChem	[M-H]-	146.516	31661259
DeepCCS	[M+H]+	141.067	30932474
DeepCCS	[M-H]-	137.239	30932474
DeepCCS	[M-2H]-	174.543	30932474
DeepCCS	[M+Na]+	150.143	30932474
AllCCS	[M+H]+	146.6	32859911
AllCCS	[M+H-H2O]+	142.9	32859911
AllCCS	[M+NH4]+	150.1	32859911
AllCCS	[M+Na]+	151.1	32859911
AllCCS	[M-H]-	147.1	32859911
AllCCS	[M+Na-2H]-	148.2	32859911
AllCCS	[M+HCOO]-	149.6	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	3.93 minutes	32390414
Predicted by Siyang on May 30, 2022	10.0503 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	2.74 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	1386.8 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	258.4 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	110.0 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	175.3 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	86.9 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	332.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	351.0 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	96.6 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	737.9 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	308.5 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1037.1 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	241.8 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	266.7 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	447.0 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	224.5 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	72.0 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
4,5-octadienoylglycine	CCC=C=CCCC(O)=NCC(O)=O	2846.6	Standard polar	33892256
4,5-octadienoylglycine	CCC=C=CCCC(O)=NCC(O)=O	1612.3	Standard non polar	33892256
4,5-octadienoylglycine	CCC=C=CCCC(O)=NCC(O)=O	1742.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
4,5-octadienoylglycine,1TMS,isomer #1	CCC=C=CCCC(=NCC(=O)O)O[Si](C)(C)C	1870.4	Semi standard non polar	33892256
4,5-octadienoylglycine,1TMS,isomer #2	CCC=C=CCCC(O)=NCC(=O)O[Si](C)(C)C	1820.2	Semi standard non polar	33892256
4,5-octadienoylglycine,2TMS,isomer #1	CCC=C=CCCC(=NCC(=O)O[Si](C)(C)C)O[Si](C)(C)C	1884.2	Semi standard non polar	33892256
4,5-octadienoylglycine,1TBDMS,isomer #1	CCC=C=CCCC(=NCC(=O)O)O[Si](C)(C)C(C)(C)C	2095.8	Semi standard non polar	33892256
4,5-octadienoylglycine,1TBDMS,isomer #2	CCC=C=CCCC(O)=NCC(=O)O[Si](C)(C)C(C)(C)C	2028.5	Semi standard non polar	33892256
4,5-octadienoylglycine,2TBDMS,isomer #1	CCC=C=CCCC(=NCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2268.6	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 4,5-octadienoylglycine GC-MS (Non-derivatized) - 70eV, Positive	splash10-00fv-9400000000-aa16e63cb2afbf4aa68d	2017-09-14	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4,5-octadienoylglycine GC-MS (2 TMS) - 70eV, Positive	splash10-00vi-9131000000-8e5b91de0ee287a6605b	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4,5-octadienoylglycine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4,5-octadienoylglycine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 10V, Negative-QTOF	splash10-0002-1900000000-e539340c81a267043998	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 20V, Negative-QTOF	splash10-00dj-4900000000-95df17d8c743112e852f	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 40V, Negative-QTOF	splash10-00dl-9000000000-31e38e06c8e2eb71e141	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 10V, Positive-QTOF	splash10-00dj-9600000000-1a9d3dc1a270b292b3b9	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 20V, Positive-QTOF	splash10-00di-9000000000-b1f8bece62478485c69e	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 40V, Positive-QTOF	splash10-0adi-9000000000-a24b65a689fadfe93296	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 10V, Positive-QTOF	splash10-0002-9600000000-c0b72e887a80dd59ec71	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 20V, Positive-QTOF	splash10-014j-9000000000-ff75c5f4f88afa59c970	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 40V, Positive-QTOF	splash10-014i-9000000000-bc59f9e15e856e3b88db	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 10V, Negative-QTOF	splash10-00di-9400000000-854d58b53a0085105e06	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 20V, Negative-QTOF	splash10-00di-9100000000-c4d38f81f4bbd3fe53b8	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4,5-octadienoylglycine 40V, Negative-QTOF	splash10-05fr-9000000000-27168a9813afdcdb4526	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Urine

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Urine	Detected but not Quantified	Not Quantified	Adult (24-38years old)	Not Specified	Normal	20971021	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

74849704

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131802975

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for 4,5-octadienoylglycine (HMDB0094795)

MOL for HMDB0094795 (4,5-octadienoylglycine)

3D MOL for HMDB0094795 (4,5-octadienoylglycine)

3D SDF for HMDB0094795 (4,5-octadienoylglycine)

3D-SDF for HMDB0094795 (4,5-octadienoylglycine)

PDB for HMDB0094795 (4,5-octadienoylglycine)

3D PDB for HMDB0094795 (4,5-octadienoylglycine)

SMILES for HMDB0094795 (4,5-octadienoylglycine)

INCHI for HMDB0094795 (4,5-octadienoylglycine)

Structure for HMDB0094795 (4,5-octadienoylglycine)

3D Structure for HMDB0094795 (4,5-octadienoylglycine)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra