| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 04:51:27 UTC |
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| Update Date | 2022-11-30 19:26:13 UTC |
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| HMDB ID | HMDB0115495 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) |
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| Description | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)), in particular, consists of one chain of dihomo-gamma-linolenic acid at the C-1 position and one chain of linoleic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC InChI=1S/C41H71O8P/c1-3-5-7-9-11-13-15-17-19-20-22-23-25-27-29-31-33-35-40(42)47-37-39(38-48-50(44,45)46)49-41(43)36-34-32-30-28-26-24-21-18-16-14-12-10-8-6-4-2/h11-14,17-19,21-23,39H,3-10,15-16,20,24-38H2,1-2H3,(H2,44,45,46)/b13-11-,14-12-,19-17-,21-18-,23-22-/t39-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Dihomo-gamma-linolenoyl-2-linoleoyl-sn-glycero-3-phosphate | HMDB | | 1-Dihomo-gamma-linolenoyl-2-linoleoyl-sn-phosphatidic acid | HMDB | | PA(20:3/18:2) | HMDB | | PA(20:3N6/18:2N6) | HMDB | | PA(20:3W6/18:2W6) | HMDB | | PA(38:5) | HMDB | | Phosphatidic acid(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) | HMDB | | Phosphatidic acid(20:3/18:2) | HMDB | | Phosphatidic acid(20:3n6/18:2n6) | HMDB | | Phosphatidic acid(20:3W6/18:2W6) | HMDB | | Phosphatidic acid(38:5) | HMDB | | Phosphatidate(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) | HMDB | | Phosphatidate(20:3/18:2) | HMDB | | Phosphatidate(20:3N6/18:2N6) | HMDB | | Phosphatidate(20:3W6/18:2W6) | HMDB | | Phosphatidate(38:5) | HMDB | | 1-dihomo-gamma-linolenoyl-2-linoleoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-dihomo-gamma-linolenoyl-2-linoleoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(20:3/18:2) | SMPDB, HMDB | | PA(20:3n6/18:2n6) | SMPDB, HMDB | | PA(20:3w6/18:2w6) | SMPDB, HMDB | | PA(38:5) | SMPDB, HMDB | | Phosphatidic acid(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) | SMPDB, HMDB | | Phosphatidic acid(20:3/18:2) | SMPDB, HMDB | | Phosphatidic acid(20:3n6/18:2n6) | SMPDB, HMDB | | Phosphatidic acid(20:3w6/18:2w6) | SMPDB, HMDB | | Phosphatidic acid(38:5) | SMPDB, HMDB | | Phosphatidate(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) | SMPDB, HMDB | | Phosphatidate(20:3/18:2) | SMPDB, HMDB | | Phosphatidate(20:3n6/18:2n6) | SMPDB, HMDB | | Phosphatidate(20:3w6/18:2w6) | SMPDB, HMDB | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) | SMPDB |
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| Chemical Formula | C41H71O8P |
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| Average Molecular Weight | 722.985 |
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| Monoisotopic Molecular Weight | 722.488656244 |
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| IUPAC Name | [(2R)-3-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-3-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(O)=O)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC |
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| InChI Identifier | InChI=1S/C41H71O8P/c1-3-5-7-9-11-13-15-17-19-20-22-23-25-27-29-31-33-35-40(42)47-37-39(38-48-50(44,45)46)49-41(43)36-34-32-30-28-26-24-21-18-16-14-12-10-8-6-4-2/h11-14,17-19,21-23,39H,3-10,15-16,20,24-38H2,1-2H3,(H2,44,45,46)/b13-11-,14-12-,19-17-,21-18-,23-22-/t39-/m1/s1 |
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| InChI Key | QUGWSTXSPNJMBE-YRMMAIRTSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- Cardiolipin Biosynthesis CL(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) (PathBank: SMP0079771)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0035032)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0035033)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/20:3(8Z,11Z,14Z)) (PathBank: SMP0035034)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0035035)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0035036)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0035037)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/22:2(13Z,16Z)) (PathBank: SMP0035038)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0035039)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0035040)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0035041)
- De Novo Triacylglycerol Biosynthesis TG(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0035042)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 6.63 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 36.2051 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.89 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5258.6 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 512.2 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 343.2 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 298.3 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1190.7 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1941.9 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1157.7 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 234.2 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 3712.4 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1229.8 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 2894.9 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1391.1 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 751.2 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 468.4 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 877.0 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 11.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 5132.8 | Semi standard non polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 4530.3 | Standard non polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 5494.6 | Standard polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),2TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 5114.8 | Semi standard non polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),2TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 4495.0 | Standard non polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),2TMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 4776.9 | Standard polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 5347.6 | Semi standard non polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 4637.5 | Standard non polar | 33892256 | | PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\C/C=C\CCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCC/C=C\C/C=C\CCCCC | 5488.6 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 10V, Positive-QTOF | splash10-03kl-1092502400-928885c51158b7a2551c | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 20V, Positive-QTOF | splash10-01p2-1192211000-421c87a140fe99294338 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 40V, Positive-QTOF | splash10-03ds-1196024000-6f373079939108092b53 | 2019-02-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 10V, Negative-QTOF | splash10-05dr-4094400300-708d87825d6353775d93 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 20V, Negative-QTOF | splash10-004i-9032000000-776c9cc217ff8f4b1859 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 40V, Negative-QTOF | splash10-004i-9000000000-93c9e791fe2e4c006025 | 2019-02-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 10V, Negative-QTOF | splash10-00di-0000000900-8021e9daadeb1989f632 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 20V, Negative-QTOF | splash10-062f-0033900400-a739055a2758b81b9bed | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 40V, Negative-QTOF | splash10-0a6r-1169600100-a9ca58078430febda900 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 10V, Positive-QTOF | splash10-0ab9-0000000900-7954a08116ed6bddb705 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 20V, Positive-QTOF | splash10-00fr-0000005900-8efe52195da8bbe88870 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 40V, Positive-QTOF | splash10-00ou-0000906200-9e1d1db9ad929f71e063 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 10V, Positive-QTOF | splash10-0002-0000000900-3c6297c8e75d148e84fe | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 20V, Positive-QTOF | splash10-0002-0000009900-bf69caf620d90cd37f0a | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(20:3(8Z,11Z,14Z)/18:2(9Z,12Z)) 40V, Positive-QTOF | splash10-00kk-0000902300-07c0c8472a86481a9b54 | 2021-09-25 | Wishart Lab | View Spectrum |
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