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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2020-06-02 22:03:46 UTC

Update Date

2022-03-07 03:18:20 UTC

HMDB ID

HMDB0240649

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Eicosapentaenoylcholine

Description

Eicosapentaenoylcholine, also known as choline eicosapentaenoate, belongs to the class of organic compounds known as acyl cholines. These are acylated derivatives of choline. Choline or 2-Hydroxy-N,N,N-trimethylethanaminium is a quaternary ammonium salt with the chemical formula (CH3)3N+(CH2)2OH. Based on a literature review very few articles have been published on Eicosapentaenoylcholine.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652306022023582D          

 28 27  0  0  0  0            999 V2000
 9995.837510000.1090    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9995.124110000.5199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9994.410610000.1090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9993.697010000.5199    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
 9992.981510000.1070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9993.697010001.3428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9992.846710001.0134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10010.126010000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10009.411510000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10008.697110000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10007.982610000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10007.268110000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10006.553610000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10005.839210000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10005.124610000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10004.410210000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10003.695610000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.981310000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.266710000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.552410000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10000.837910000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10000.123310000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9999.408910000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9998.694410000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9997.979910000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9997.265410000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.551010000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.551010001.3438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  4  7  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27  1  1  0  0  0  0
M  CHG  1   4   1
M  END

HMDB0240649
     RDKit          3D
Eicosapentaenoylcholine
 70 69  0  0  0  0  0  0  0  0999 V2000
   -9.6739   -1.2924   -2.7750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0916   -0.8370   -1.4404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8737   -1.9518   -0.5235 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7590   -2.3671    0.0243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4740   -1.6772   -0.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9612   -1.1969    1.0412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7119    0.0611    1.3748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9207    1.1487    0.4738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8727    2.0200   -0.0192 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5964    1.9448    0.1983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8826    0.9228    1.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2209    1.6709    2.1135 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9185    1.6103    2.2634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0340    0.8125    1.3824 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8978    1.7870    0.7151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1815    1.6816    0.8548 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8813    0.6745    1.6226 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7196    1.2753    2.7529 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7592    2.2214    2.2049 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6350    1.4400    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5557    0.7537    1.8025 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4747    1.4419   -0.0791 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3114    0.6951   -0.9345 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2650   -0.7858   -0.6791 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1311   -1.4865   -1.5796 N   0  0  0  0  0  4  0  0  0  0  0  0
    8.1256   -0.5985   -2.0981 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3724   -2.0321   -2.7025 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7517   -2.6198   -0.8934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9173   -1.8852   -3.2923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9592   -0.4153   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6181   -1.8716   -2.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2728   -0.1788   -1.6714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8918   -0.1726   -0.9888 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7902   -2.5274   -0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7921   -3.2377    0.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6208   -0.9481   -1.0338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7835   -2.5147   -0.6010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7702   -1.9856    1.8056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3695    0.1974    2.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5700    0.8863   -0.4177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6521    1.8887    1.0231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2087    2.8847   -0.6841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9745    2.7391   -0.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4443    0.1201    1.4226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0412    0.5159    0.3474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8324    2.2763    2.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4725    2.1971    3.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5770    0.1164    2.0618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4606    0.1458    0.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4309    2.5949    0.1010 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7956    2.4384    0.3331 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3314   -0.1523    2.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6320    0.2038    0.9090 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0217    1.8104    3.4214 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2170    0.4625    3.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2746    3.0760    1.7081 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3594    2.6163    3.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3680    1.0862   -0.8853 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561    0.9060   -1.9715 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5466   -1.0497    0.3545 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2081   -1.0977   -0.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7697   -1.2112   -2.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8259   -0.2735   -1.2844 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7390    0.2307   -2.6851 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3169   -2.0979   -2.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7420   -3.0672   -2.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4387   -1.3736   -3.5840 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5915   -2.9576   -1.5387 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0074   -3.4177   -0.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2216   -2.2737    0.0701 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 25 28  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  2 32  1  0
  2 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  9 42  1  0
 10 43  1  0
 11 44  1  0
 11 45  1  0
 12 46  1  0
 13 47  1  0
 14 48  1  0
 14 49  1  0
 15 50  1  0
 16 51  1  0
 17 52  1  0
 17 53  1  0
 18 54  1  0
 18 55  1  0
 19 56  1  0
 19 57  1  0
 23 58  1  0
 23 59  1  0
 24 60  1  0
 24 61  1  0
 26 62  1  0
 26 63  1  0
 26 64  1  0
 27 65  1  0
 27 66  1  0
 27 67  1  0
 28 68  1  0
 28 69  1  0
 28 70  1  0
M  CHG  1  25   1
M  END


  Mrv1652306022023582D          

 28 27  0  0  0  0            999 V2000
 9995.837510000.1090    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9995.124110000.5199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9994.410610000.1090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9993.697010000.5199    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
 9992.981510000.1070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9993.697010001.3428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9992.846710001.0134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10010.126010000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10009.411510000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10008.697110000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10007.982610000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10007.268110000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10006.553610000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10005.839210000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10005.124610000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10004.410210000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10003.695610000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.981310000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.266710000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.552410000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10000.837910000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10000.123310000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9999.408910000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9998.694410000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9997.979910000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9997.265410000.1063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.551010000.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.551010001.3438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  4  7  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27  1  1  0  0  0  0
M  CHG  1   4   1
M  END
> <DATABASE_ID>
HMDB0240649

> <DATABASE_NAME>
hmdb

> <SMILES>
CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OCC[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C25H42NO2/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-25(27)28-24-23-26(2,3)4/h6-7,9-10,12-13,15-16,18-19H,5,8,11,14,17,20-24H2,1-4H3/q+1/b7-6-,10-9-,13-12-,16-15-,19-18-

> <INCHI_KEY>
GVBOIWTXZCLZKP-WMPRHZDHSA-N

> <FORMULA>
C25H42NO2

> <MOLECULAR_WEIGHT>
388.615

> <EXACT_MASS>
388.321006017

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
47.76772777744064

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]ethyl}trimethylazanium

> <ALOGPS_LOGP>
2.69

> <JCHEM_LOGP>
2.227451116194921

> <ALOGPS_LOGS>
-7.41

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
-7.047292151740391

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
139.77240000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.66e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
{2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]ethyl}trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0240649
     RDKit          3D
Eicosapentaenoylcholine
 70 69  0  0  0  0  0  0  0  0999 V2000
   -9.6739   -1.2924   -2.7750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0916   -0.8370   -1.4404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8737   -1.9518   -0.5235 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7590   -2.3671    0.0243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4740   -1.6772   -0.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9612   -1.1969    1.0412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7119    0.0611    1.3748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9207    1.1487    0.4738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8727    2.0200   -0.0192 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5964    1.9448    0.1983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8826    0.9228    1.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2209    1.6709    2.1135 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9185    1.6103    2.2634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0340    0.8125    1.3824 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8978    1.7870    0.7151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1815    1.6816    0.8548 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8813    0.6745    1.6226 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7196    1.2753    2.7529 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7592    2.2214    2.2049 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6350    1.4400    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5557    0.7537    1.8025 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4747    1.4419   -0.0791 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3114    0.6951   -0.9345 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2650   -0.7858   -0.6791 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1311   -1.4865   -1.5796 N   0  0  0  0  0  4  0  0  0  0  0  0
    8.1256   -0.5985   -2.0981 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3724   -2.0321   -2.7025 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7517   -2.6198   -0.8934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9173   -1.8852   -3.2923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9592   -0.4153   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6181   -1.8716   -2.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2728   -0.1788   -1.6714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8918   -0.1726   -0.9888 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7902   -2.5274   -0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7921   -3.2377    0.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6208   -0.9481   -1.0338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7835   -2.5147   -0.6010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7702   -1.9856    1.8056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3695    0.1974    2.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5700    0.8863   -0.4177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6521    1.8887    1.0231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2087    2.8847   -0.6841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9745    2.7391   -0.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4443    0.1201    1.4226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0412    0.5159    0.3474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8324    2.2763    2.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4725    2.1971    3.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5770    0.1164    2.0618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4606    0.1458    0.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4309    2.5949    0.1010 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7956    2.4384    0.3331 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3314   -0.1523    2.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6320    0.2038    0.9090 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0217    1.8104    3.4214 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2170    0.4625    3.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2746    3.0760    1.7081 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3594    2.6163    3.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3680    1.0862   -0.8853 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561    0.9060   -1.9715 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5466   -1.0497    0.3545 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2081   -1.0977   -0.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7697   -1.2112   -2.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8259   -0.2735   -1.2844 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7390    0.2307   -2.6851 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3169   -2.0979   -2.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7420   -3.0672   -2.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4387   -1.3736   -3.5840 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5915   -2.9576   -1.5387 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0074   -3.4177   -0.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2216   -2.2737    0.0701 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 25 28  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  2 32  1  0
  2 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  9 42  1  0
 10 43  1  0
 11 44  1  0
 11 45  1  0
 12 46  1  0
 13 47  1  0
 14 48  1  0
 14 49  1  0
 15 50  1  0
 16 51  1  0
 17 52  1  0
 17 53  1  0
 18 54  1  0
 18 55  1  0
 19 56  1  0
 19 57  1  0
 23 58  1  0
 23 59  1  0
 24 60  1  0
 24 61  1  0
 26 62  1  0
 26 63  1  0
 26 64  1  0
 27 65  1  0
 27 66  1  0
 27 67  1  0
 28 68  1  0
 28 69  1  0
 28 70  1  0
M  CHG  1  25   1
M  END

HEADER    PROTEIN                                 02-JUN-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-JUN-20         0                                  
HETATM    1  O   UNK     0    8658.8978666.870   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0    8657.5658667.637   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0    8656.2338666.870   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0    8654.9018667.637   0.000  0.00  0.00           N+1
HETATM    5  C   UNK     0    8653.5668666.866   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0    8654.9018669.173   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0    8653.3148668.558   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0    8685.5698667.635   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0    8684.2358666.865   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0    8682.9018667.635   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0    8681.5678667.635   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0    8680.2348666.865   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0    8678.9008667.635   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0    8677.5668667.635   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0    8676.2338666.865   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0    8674.8998667.635   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0    8673.5658667.635   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0    8672.2328666.865   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0    8670.8988667.635   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0    8669.5648667.635   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0    8668.2318666.865   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0    8666.8978667.635   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0    8665.5638667.635   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0    8664.2298666.865   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0    8662.8968667.635   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0    8661.5628666.865   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0    8660.2298667.635   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0    8660.2298669.175   0.000  0.00  0.00           O+0
CONECT    1    2   27                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6    7                                             
CONECT    5    4                                                            
CONECT    6    4                                                            
CONECT    7    4                                                            
CONECT    8    9                                                            
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28    1                                                  
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   54    0
END

COMPND    HMDB0240649
HETATM    1  C1  UNL     1      -9.674  -1.292  -2.775  1.00  0.00           C  
HETATM    2  C2  UNL     1      -9.092  -0.837  -1.440  1.00  0.00           C  
HETATM    3  C3  UNL     1      -8.874  -1.952  -0.523  1.00  0.00           C  
HETATM    4  C4  UNL     1      -7.759  -2.367   0.024  1.00  0.00           C  
HETATM    5  C5  UNL     1      -6.474  -1.677  -0.260  1.00  0.00           C  
HETATM    6  C6  UNL     1      -5.961  -1.197   1.041  1.00  0.00           C  
HETATM    7  C7  UNL     1      -5.712   0.061   1.375  1.00  0.00           C  
HETATM    8  C8  UNL     1      -5.921   1.149   0.474  1.00  0.00           C  
HETATM    9  C9  UNL     1      -4.873   2.020  -0.019  1.00  0.00           C  
HETATM   10  C10 UNL     1      -3.596   1.945   0.198  1.00  0.00           C  
HETATM   11  C11 UNL     1      -2.883   0.923   1.017  1.00  0.00           C  
HETATM   12  C12 UNL     1      -2.221   1.671   2.114  1.00  0.00           C  
HETATM   13  C13 UNL     1      -0.919   1.610   2.263  1.00  0.00           C  
HETATM   14  C14 UNL     1      -0.034   0.812   1.382  1.00  0.00           C  
HETATM   15  C15 UNL     1       0.898   1.787   0.715  1.00  0.00           C  
HETATM   16  C16 UNL     1       2.182   1.682   0.855  1.00  0.00           C  
HETATM   17  C17 UNL     1       2.881   0.674   1.623  1.00  0.00           C  
HETATM   18  C18 UNL     1       3.720   1.275   2.753  1.00  0.00           C  
HETATM   19  C19 UNL     1       4.759   2.221   2.205  1.00  0.00           C  
HETATM   20  C20 UNL     1       5.635   1.440   1.291  1.00  0.00           C  
HETATM   21  O1  UNL     1       6.556   0.754   1.803  1.00  0.00           O  
HETATM   22  O2  UNL     1       5.475   1.442  -0.079  1.00  0.00           O  
HETATM   23  C21 UNL     1       6.311   0.695  -0.935  1.00  0.00           C  
HETATM   24  C22 UNL     1       6.265  -0.786  -0.679  1.00  0.00           C  
HETATM   25  N1  UNL     1       7.131  -1.487  -1.580  1.00  0.00           N1+
HETATM   26  C23 UNL     1       8.126  -0.599  -2.098  1.00  0.00           C  
HETATM   27  C24 UNL     1       6.372  -2.032  -2.702  1.00  0.00           C  
HETATM   28  C25 UNL     1       7.752  -2.620  -0.893  1.00  0.00           C  
HETATM   29  H1  UNL     1      -8.917  -1.885  -3.292  1.00  0.00           H  
HETATM   30  H2  UNL     1      -9.959  -0.415  -3.388  1.00  0.00           H  
HETATM   31  H3  UNL     1     -10.618  -1.872  -2.602  1.00  0.00           H  
HETATM   32  H4  UNL     1      -8.273  -0.179  -1.671  1.00  0.00           H  
HETATM   33  H5  UNL     1      -9.892  -0.173  -0.989  1.00  0.00           H  
HETATM   34  H6  UNL     1      -9.790  -2.527  -0.256  1.00  0.00           H  
HETATM   35  H7  UNL     1      -7.792  -3.238   0.699  1.00  0.00           H  
HETATM   36  H8  UNL     1      -6.621  -0.948  -1.034  1.00  0.00           H  
HETATM   37  H9  UNL     1      -5.783  -2.515  -0.601  1.00  0.00           H  
HETATM   38  H10 UNL     1      -5.770  -1.986   1.806  1.00  0.00           H  
HETATM   39  H11 UNL     1      -5.369   0.197   2.440  1.00  0.00           H  
HETATM   40  H12 UNL     1      -6.570   0.886  -0.418  1.00  0.00           H  
HETATM   41  H13 UNL     1      -6.652   1.889   1.023  1.00  0.00           H  
HETATM   42  H14 UNL     1      -5.209   2.885  -0.684  1.00  0.00           H  
HETATM   43  H15 UNL     1      -2.975   2.739  -0.287  1.00  0.00           H  
HETATM   44  H16 UNL     1      -3.444   0.120   1.423  1.00  0.00           H  
HETATM   45  H17 UNL     1      -2.041   0.516   0.347  1.00  0.00           H  
HETATM   46  H18 UNL     1      -2.832   2.276   2.799  1.00  0.00           H  
HETATM   47  H19 UNL     1      -0.473   2.197   3.105  1.00  0.00           H  
HETATM   48  H20 UNL     1       0.577   0.116   2.062  1.00  0.00           H  
HETATM   49  H21 UNL     1      -0.461   0.146   0.666  1.00  0.00           H  
HETATM   50  H22 UNL     1       0.431   2.595   0.101  1.00  0.00           H  
HETATM   51  H23 UNL     1       2.796   2.438   0.333  1.00  0.00           H  
HETATM   52  H24 UNL     1       2.331  -0.152   2.027  1.00  0.00           H  
HETATM   53  H25 UNL     1       3.632   0.204   0.909  1.00  0.00           H  
HETATM   54  H26 UNL     1       3.022   1.810   3.421  1.00  0.00           H  
HETATM   55  H27 UNL     1       4.217   0.463   3.285  1.00  0.00           H  
HETATM   56  H28 UNL     1       4.275   3.076   1.708  1.00  0.00           H  
HETATM   57  H29 UNL     1       5.359   2.616   3.046  1.00  0.00           H  
HETATM   58  H30 UNL     1       7.368   1.086  -0.885  1.00  0.00           H  
HETATM   59  H31 UNL     1       5.956   0.906  -1.971  1.00  0.00           H  
HETATM   60  H32 UNL     1       6.547  -1.050   0.354  1.00  0.00           H  
HETATM   61  H33 UNL     1       5.208  -1.098  -0.825  1.00  0.00           H  
HETATM   62  H34 UNL     1       8.770  -1.211  -2.794  1.00  0.00           H  
HETATM   63  H35 UNL     1       8.826  -0.274  -1.284  1.00  0.00           H  
HETATM   64  H36 UNL     1       7.739   0.231  -2.685  1.00  0.00           H  
HETATM   65  H37 UNL     1       5.317  -2.098  -2.401  1.00  0.00           H  
HETATM   66  H38 UNL     1       6.742  -3.067  -2.943  1.00  0.00           H  
HETATM   67  H39 UNL     1       6.439  -1.374  -3.584  1.00  0.00           H  
HETATM   68  H40 UNL     1       8.591  -2.958  -1.539  1.00  0.00           H  
HETATM   69  H41 UNL     1       7.007  -3.418  -0.701  1.00  0.00           H  
HETATM   70  H42 UNL     1       8.222  -2.274   0.070  1.00  0.00           H  
CONECT    1    2   29   30   31
CONECT    2    3   32   33
CONECT    3    4    4   34
CONECT    4    5   35
CONECT    5    6   36   37
CONECT    6    7    7   38
CONECT    7    8   39
CONECT    8    9   40   41
CONECT    9   10   10   42
CONECT   10   11   43
CONECT   11   12   44   45
CONECT   12   13   13   46
CONECT   13   14   47
CONECT   14   15   48   49
CONECT   15   16   16   50
CONECT   16   17   51
CONECT   17   18   52   53
CONECT   18   19   54   55
CONECT   19   20   56   57
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   58   59
CONECT   24   25   60   61
CONECT   25   26   27   28
CONECT   26   62   63   64
CONECT   27   65   66   67
CONECT   28   68   69   70
END

HMDB0240649
     RDKit          3D
Eicosapentaenoylcholine
 70 69  0  0  0  0  0  0  0  0999 V2000
   -9.6739   -1.2924   -2.7750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0916   -0.8370   -1.4404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8737   -1.9518   -0.5235 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7590   -2.3671    0.0243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4740   -1.6772   -0.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9612   -1.1969    1.0412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7119    0.0611    1.3748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9207    1.1487    0.4738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8727    2.0200   -0.0192 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5964    1.9448    0.1983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8826    0.9228    1.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2209    1.6709    2.1135 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9185    1.6103    2.2634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0340    0.8125    1.3824 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8978    1.7870    0.7151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1815    1.6816    0.8548 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8813    0.6745    1.6226 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7196    1.2753    2.7529 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7592    2.2214    2.2049 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6350    1.4400    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5557    0.7537    1.8025 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4747    1.4419   -0.0791 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3114    0.6951   -0.9345 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2650   -0.7858   -0.6791 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1311   -1.4865   -1.5796 N   0  0  0  0  0  4  0  0  0  0  0  0
    8.1256   -0.5985   -2.0981 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3724   -2.0321   -2.7025 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7517   -2.6198   -0.8934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9173   -1.8852   -3.2923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9592   -0.4153   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6181   -1.8716   -2.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2728   -0.1788   -1.6714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8918   -0.1726   -0.9888 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7902   -2.5274   -0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7921   -3.2377    0.6994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6208   -0.9481   -1.0338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7835   -2.5147   -0.6010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7702   -1.9856    1.8056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3695    0.1974    2.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5700    0.8863   -0.4177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6521    1.8887    1.0231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2087    2.8847   -0.6841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9745    2.7391   -0.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4443    0.1201    1.4226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0412    0.5159    0.3474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8324    2.2763    2.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4725    2.1971    3.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5770    0.1164    2.0618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4606    0.1458    0.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4309    2.5949    0.1010 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7956    2.4384    0.3331 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3314   -0.1523    2.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6320    0.2038    0.9090 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0217    1.8104    3.4214 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2170    0.4625    3.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2746    3.0760    1.7081 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3594    2.6163    3.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3680    1.0862   -0.8853 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561    0.9060   -1.9715 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5466   -1.0497    0.3545 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2081   -1.0977   -0.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7697   -1.2112   -2.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8259   -0.2735   -1.2844 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7390    0.2307   -2.6851 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3169   -2.0979   -2.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7420   -3.0672   -2.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4387   -1.3736   -3.5840 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5915   -2.9576   -1.5387 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0074   -3.4177   -0.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2216   -2.2737    0.0701 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 25 28  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  2 32  1  0
  2 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  9 42  1  0
 10 43  1  0
 11 44  1  0
 11 45  1  0
 12 46  1  0
 13 47  1  0
 14 48  1  0
 14 49  1  0
 15 50  1  0
 16 51  1  0
 17 52  1  0
 17 53  1  0
 18 54  1  0
 18 55  1  0
 19 56  1  0
 19 57  1  0
 23 58  1  0
 23 59  1  0
 24 60  1  0
 24 61  1  0
 26 62  1  0
 26 63  1  0
 26 64  1  0
 27 65  1  0
 27 66  1  0
 27 67  1  0
 28 68  1  0
 28 69  1  0
 28 70  1  0
M  CHG  1  25   1
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Choline eicosapentaenoate	HMDB
Choline eicosapentaenoic acid	HMDB
Eicosapentaenoylcholine	HMDB

Chemical Formula

C₂₅H₄₂NO₂

Average Molecular Weight

388.615

Monoisotopic Molecular Weight

388.321006017

IUPAC Name

{2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]ethyl}trimethylazanium

Traditional Name

{2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]ethyl}trimethylazanium

CAS Registry Number

1891060-19-7

SMILES

CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OCC[N+](C)(C)C

InChI Identifier

InChI=1S/C25H42NO2/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-25(27)28-24-23-26(2,3)4/h6-7,9-10,12-13,15-16,18-19H,5,8,11,14,17,20-24H2,1-4H3/q+1/b7-6-,10-9-,13-12-,16-15-,19-18-

InChI Key

GVBOIWTXZCLZKP-WMPRHZDHSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyl cholines. These are acylated derivatives of choline. Choline or 2-Hydroxy-N,N,N-trimethylethanaminium is a quaternary ammonium salt with the chemical formula (CH3)3N+(CH2)2OH.

Kingdom

Organic compounds

Super Class

Organic nitrogen compounds

Class

Organonitrogen compounds

Sub Class

Quaternary ammonium salts

Direct Parent

Acyl cholines

Alternative Parents

Substituents

Acyl choline
Fatty acid ester
Fatty acyl
Tetraalkylammonium salt
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organic salt
Organooxygen compound
Carbonyl group
Amine
Organic cation
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31160086)

Source

Exogenous

Exogenous (HMDB: HMDB0240649)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	2.69	ALOGPS
logP	2.23	ChemAxon
logS	-7.4	ALOGPS
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	139.77 m³·mol⁻¹	ChemAxon
Polarizability	47.77 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	198.963	30932474
DeepCCS	[M-H]-	196.605	30932474
DeepCCS	[M-2H]-	230.723	30932474
DeepCCS	[M+Na]+	205.951	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	6.06 minutes	32390414
Predicted by Siyang on May 30, 2022	24.4527 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	2.03 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3263.8 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	351.5 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	236.7 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	288.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	550.0 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1159.1 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	610.1 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	267.1 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	2657.0 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	752.0 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	2253.2 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	694.2 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	564.6 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	348.2 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	283.5 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	9.5 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Eicosapentaenoylcholine	CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OCC[N+](C)(C)C	3368.6	Standard polar	33892256
Eicosapentaenoylcholine	CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OCC[N+](C)(C)C	2385.3	Standard non polar	33892256
Eicosapentaenoylcholine	CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OCC[N+](C)(C)C	2674.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Eicosapentaenoylcholine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Eicosapentaenoylcholine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Adult (>18 years old)	Both	Normal	31160086	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

118562750

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Leung RYH, Li GHY, Cheung BMY, Tan KCB, Kung AWC, Cheung CL: Serum metabolomic profiling and its association with 25-hydroxyvitamin D. Clin Nutr. 2020 Apr;39(4):1179-1187. doi: 10.1016/j.clnu.2019.04.035. Epub 2019 May 11. [PubMed:31160086 ]

Showing metabocard for Eicosapentaenoylcholine (HMDB0240649)

MOL for HMDB0240649 (Eicosapentaenoylcholine)

3D MOL for HMDB0240649 (Eicosapentaenoylcholine)

3D SDF for HMDB0240649 (Eicosapentaenoylcholine)

3D-SDF for HMDB0240649 (Eicosapentaenoylcholine)

PDB for HMDB0240649 (Eicosapentaenoylcholine)

3D PDB for HMDB0240649 (Eicosapentaenoylcholine)

SMILES for HMDB0240649 (Eicosapentaenoylcholine)

INCHI for HMDB0240649 (Eicosapentaenoylcholine)

Structure for HMDB0240649 (Eicosapentaenoylcholine)

3D Structure for HMDB0240649 (Eicosapentaenoylcholine)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra