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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-02-24 01:44:51 UTC

Update Date

2022-10-24 19:44:16 UTC

HMDB ID

HMDB0240760

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(9Z)-3-Hydroxydodecenoylcarnitine

Description

(9Z)-3-Hydroxydodecenoylcarnitine is an acylcarnitine. More specifically, it is an (9Z)-hydroxydodec-9-enoic acid ester of carnitine. Acylcarnitines were first discovered more than 70 year ago (PMID: 13825279 ). It is believed that there are more than 1000 types of acylcarnitines in the human body. The general role of acylcarnitines is to transport acyl-groups (organic acids and fatty acids) from the cytoplasm into the mitochondria so that they can be broken down to produce energy. This process is known as beta-oxidation. According to a recent review (PMID: 35710135 ), acylcarnitines (ACs) can be classified into 9 different categories depending on the type and size of their acyl-group: 1) short-chain ACs; 2) medium-chain ACs; 3) long-chain ACs; 4) very long-chain ACs; 5) hydroxy ACs; 6) branched chain ACs; 7) unsaturated ACs; 8) dicarboxylic ACs and 9) miscellaneous ACs. Short-chain ACs have acyl-groups with two to five carbons (C2-C5), medium-chain ACs have acyl-groups with six to thirteen carbons (C6-C13), long-chain ACs have acyl-groups with fourteen to twenty once carbons (C14-C21) and very long-chain ACs have acyl groups with more than 22 carbons. (9Z)-3-Hydroxydodecenoylcarnitine is therefore classified as a medium chain AC. As a medium-chain acylcarnitine (9Z)-3-Hydroxydodecenoylcarnitine is somewhat less abundant than short-chain acylcarnitines. These are formed either through esterification with L-carnitine or through the peroxisomal metabolism of longer chain acylcarnitines (PMID: 30540494 ). Many medium-chain acylcarnitines can serve as useful markers for inherited disorders of fatty acid metabolism. Carnitine octanoyltransferase (CrOT, EC:2.3.1.137) is responsible for the synthesis of all medium-chain (MCAC, C5-C12) and medium-length branched-chain acylcarnitines in peroxisomes (PMID: 10486279 ). The study of acylcarnitines is an active area of research and it is likely that many novel acylcarnitines will be discovered in the coming years. It is also likely that many novel roles in health and disease will be uncovered. An excellent review of the current state of knowledge for acylcarnitines is available (PMID: 35710135 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652302242102442D          

 27 26  0  0  0  0            999 V2000
    4.9500    5.3329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    1.2079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2697    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9197    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    4.5079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    4.5079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    2.0329    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    8.5224    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    5.3329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8092    4.0954    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    9.9513    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    4.5079    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  2  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 16 12  1  0  0  0  0
 16 13  1  0  0  0  0
 17 14  1  0  0  0  0
 17 15  1  0  0  0  0
 18 14  1  0  0  0  0
 19 13  1  0  0  0  0
 20  2  1  0  0  0  0
 20  3  1  0  0  0  0
 20  4  1  0  0  0  0
 20 15  1  0  0  0  0
 21 16  1  0  0  0  0
 22 18  2  0  0  0  0
 23 18  1  0  0  0  0
 24 19  2  0  0  0  0
 25 17  1  0  0  0  0
 25 19  1  0  0  0  0
 26  6  1  0  0  0  0
 27  7  1  0  0  0  0
M  CHG  2  20   1  23  -1
M  END

HMDB0240760
     RDKit          3D
(9Z)-3-Hydroxydodecenoylcarnitine
 60 59  0  0  0  0  0  0  0  0999 V2000
    7.9289    0.8433    2.5529 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7140    1.1388    1.0581 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3811   -0.0921    0.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2870   -0.3039   -0.3350 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1898    0.6687   -0.4860 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8667    0.1500    0.0816 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4980   -1.0930   -0.6548 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2001   -1.6994   -0.1905 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0100   -0.7798   -0.3345 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7413   -0.3425   -1.7241 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8114    0.3525   -2.2980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4258    0.6071   -1.7562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6546   -0.0245   -1.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8017   -1.2246   -0.9755 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8103    0.7587   -1.1178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0426    0.1824   -0.6484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0327    0.3659   -1.7388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4872   -0.3568   -2.9457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5449   -1.6146   -2.9309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9460    0.2810   -4.0275 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.3446    0.8812    0.6353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5218    0.5125    1.3306 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.2468    0.7594    2.7610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9166   -0.8639    1.2307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6516    1.4125    1.0351 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9521    0.7344    3.0686 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4787    1.7054    2.9913 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4865   -0.0884    2.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6378    1.6121    0.6485 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9045    1.8659    1.0329 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1068   -0.9230    0.3527 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1671   -1.2957   -0.8391 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4282    1.6634   -0.1180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9870    0.7746   -1.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1109    0.9291    0.1169 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1028   -0.1154    1.1458 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5940   -1.0317   -1.7568 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2820   -1.8619   -0.3699 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3122   -1.9282    0.8806 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0565   -2.6364   -0.7365 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1536   -1.3460    0.0599 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1365    0.0874    0.3486 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5617   -1.2077   -2.3920 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4911    1.0482   -2.9171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5506    1.0712   -2.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2108    1.5089   -1.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8665   -0.8905   -0.4786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0608    1.4400   -2.0414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0230   -0.0576   -1.5679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4632    0.6755    1.3073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3373    1.9841    0.4916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1891    0.8945    3.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7412   -0.1645    3.1131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5590    1.6260    2.8328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8009   -0.9074    0.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3479   -1.2481    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1255   -1.5662    0.9658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2161    1.1076    0.1518 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2727    2.4590    1.0004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3871    1.3999    1.8928 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 16 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 22 25  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
  7 37  1  0
  7 38  1  0
  8 39  1  0
  8 40  1  0
  9 41  1  0
  9 42  1  0
 10 43  1  0
 11 44  1  0
 12 45  1  0
 12 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 21 50  1  0
 21 51  1  0
 23 52  1  0
 23 53  1  0
 23 54  1  0
 24 55  1  0
 24 56  1  0
 24 57  1  0
 25 58  1  0
 25 59  1  0
 25 60  1  0
M  CHG  2  20  -1  22   1
M  END


  Mrv1652302242102442D          

 27 26  0  0  0  0            999 V2000
    4.9500    5.3329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    1.2079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2697    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9197    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    4.5079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    4.5079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    2.0329    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    8.5224    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    5.3329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8092    4.0954    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    9.9513    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    4.5079    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  2  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 16 12  1  0  0  0  0
 16 13  1  0  0  0  0
 17 14  1  0  0  0  0
 17 15  1  0  0  0  0
 18 14  1  0  0  0  0
 19 13  1  0  0  0  0
 20  2  1  0  0  0  0
 20  3  1  0  0  0  0
 20  4  1  0  0  0  0
 20 15  1  0  0  0  0
 21 16  1  0  0  0  0
 22 18  2  0  0  0  0
 23 18  1  0  0  0  0
 24 19  2  0  0  0  0
 25 17  1  0  0  0  0
 25 19  1  0  0  0  0
 26  6  1  0  0  0  0
 27  7  1  0  0  0  0
M  CHG  2  20   1  23  -1
M  END
> <DATABASE_ID>
HMDB0240760

> <DATABASE_NAME>
hmdb

> <SMILES>
[H]\C(CC)=C(/[H])CCCCCC(O)CC(=O)OC(CC([O-])=O)C[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C19H35NO5/c1-5-6-7-8-9-10-11-12-16(21)13-19(24)25-17(14-18(22)23)15-20(2,3)4/h6-7,16-17,21H,5,8-15H2,1-4H3/b7-6-

> <INCHI_KEY>
PKPXVGIKUXUYEF-SREVYHEPSA-N

> <FORMULA>
C19H35NO5

> <MOLECULAR_WEIGHT>
357.491

> <EXACT_MASS>
357.251523231

$$$$

HMDB0240760
     RDKit          3D
(9Z)-3-Hydroxydodecenoylcarnitine
 60 59  0  0  0  0  0  0  0  0999 V2000
    7.9289    0.8433    2.5529 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7140    1.1388    1.0581 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3811   -0.0921    0.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2870   -0.3039   -0.3350 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1898    0.6687   -0.4860 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8667    0.1500    0.0816 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4980   -1.0930   -0.6548 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2001   -1.6994   -0.1905 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0100   -0.7798   -0.3345 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7413   -0.3425   -1.7241 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8114    0.3525   -2.2980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4258    0.6071   -1.7562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6546   -0.0245   -1.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8017   -1.2246   -0.9755 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8103    0.7587   -1.1178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0426    0.1824   -0.6484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0327    0.3659   -1.7388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4872   -0.3568   -2.9457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5449   -1.6146   -2.9309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9460    0.2810   -4.0275 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.3446    0.8812    0.6353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5218    0.5125    1.3306 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.2468    0.7594    2.7610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9166   -0.8639    1.2307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6516    1.4125    1.0351 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9521    0.7344    3.0686 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4787    1.7054    2.9913 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4865   -0.0884    2.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6378    1.6121    0.6485 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9045    1.8659    1.0329 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1068   -0.9230    0.3527 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1671   -1.2957   -0.8391 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4282    1.6634   -0.1180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9870    0.7746   -1.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1109    0.9291    0.1169 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1028   -0.1154    1.1458 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5940   -1.0317   -1.7568 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2820   -1.8619   -0.3699 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3122   -1.9282    0.8806 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0565   -2.6364   -0.7365 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1536   -1.3460    0.0599 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1365    0.0874    0.3486 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5617   -1.2077   -2.3920 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4911    1.0482   -2.9171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5506    1.0712   -2.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2108    1.5089   -1.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8665   -0.8905   -0.4786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0608    1.4400   -2.0414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0230   -0.0576   -1.5679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4632    0.6755    1.3073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3373    1.9841    0.4916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1891    0.8945    3.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7412   -0.1645    3.1131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5590    1.6260    2.8328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8009   -0.9074    0.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3479   -1.2481    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1255   -1.5662    0.9658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2161    1.1076    0.1518 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2727    2.4590    1.0004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3871    1.3999    1.8928 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 16 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 22 25  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
  7 37  1  0
  7 38  1  0
  8 39  1  0
  8 40  1  0
  9 41  1  0
  9 42  1  0
 10 43  1  0
 11 44  1  0
 12 45  1  0
 12 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 21 50  1  0
 21 51  1  0
 23 52  1  0
 23 53  1  0
 23 54  1  0
 24 55  1  0
 24 56  1  0
 24 57  1  0
 25 58  1  0
 25 59  1  0
 25 60  1  0
M  CHG  2  20  -1  22   1
M  END

HEADER    PROTEIN                                 24-FEB-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-21         0                                  
HETATM    1  C   UNK     0       9.240   9.955   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      22.577   2.255   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      21.037   3.795   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      24.117   3.795   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.240   8.415   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.906   7.645   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.906   6.105   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.574   6.105   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.907   5.335   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.241   6.105   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.575   5.335   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      17.242   5.335   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      21.243   7.645   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      22.577   5.335   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      15.908   6.105   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      21.243   6.105   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      22.577   8.415   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      18.576   6.105   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0      22.577   3.795   0.000  0.00  0.00           N+1
HETATM   21  O   UNK     0      15.908   7.645   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      22.577   9.955   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      23.910   7.645   0.000  0.00  0.00           O-1
HETATM   24  O   UNK     0      18.576   7.645   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      19.909   5.335   0.000  0.00  0.00           O+0
HETATM   26  H   UNK     0       6.573   8.415   0.000  0.00  0.00           H+0
HETATM   27  H   UNK     0       6.573   5.335   0.000  0.00  0.00           H+0
CONECT    1    5                                                            
CONECT    2   20                                                            
CONECT    3   20                                                            
CONECT    4   20                                                            
CONECT    5    1    6                                                       
CONECT    6    5    7   26                                                  
CONECT    7    6    8   27                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   16                                                       
CONECT   13   16   19                                                       
CONECT   14   17   18                                                       
CONECT   15   17   20                                                       
CONECT   16   12   13   21                                                  
CONECT   17   14   15   25                                                  
CONECT   18   14   22   23                                                  
CONECT   19   13   24   25                                                  
CONECT   20    2    3    4   15                                             
CONECT   21   16                                                            
CONECT   22   18                                                            
CONECT   23   18                                                            
CONECT   24   19                                                            
CONECT   25   17   19                                                       
CONECT   26    6                                                            
CONECT   27    7                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   52    0
END

COMPND    HMDB0240760
HETATM    1  C1  UNL     1       7.929   0.843   2.553  1.00  0.00           C  
HETATM    2  C2  UNL     1       7.714   1.139   1.058  1.00  0.00           C  
HETATM    3  C3  UNL     1       7.381  -0.092   0.337  1.00  0.00           C  
HETATM    4  C4  UNL     1       6.287  -0.304  -0.335  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.190   0.669  -0.486  1.00  0.00           C  
HETATM    6  C6  UNL     1       3.867   0.150   0.082  1.00  0.00           C  
HETATM    7  C7  UNL     1       3.498  -1.093  -0.655  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.200  -1.699  -0.191  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.010  -0.780  -0.334  1.00  0.00           C  
HETATM   10  C10 UNL     1       0.741  -0.343  -1.724  1.00  0.00           C  
HETATM   11  O1  UNL     1       1.811   0.353  -2.298  1.00  0.00           O  
HETATM   12  C11 UNL     1      -0.426   0.607  -1.756  1.00  0.00           C  
HETATM   13  C12 UNL     1      -1.655  -0.024  -1.275  1.00  0.00           C  
HETATM   14  O2  UNL     1      -1.802  -1.225  -0.976  1.00  0.00           O  
HETATM   15  O3  UNL     1      -2.810   0.759  -1.118  1.00  0.00           O  
HETATM   16  C13 UNL     1      -4.043   0.182  -0.648  1.00  0.00           C  
HETATM   17  C14 UNL     1      -5.033   0.366  -1.739  1.00  0.00           C  
HETATM   18  C15 UNL     1      -4.487  -0.357  -2.946  1.00  0.00           C  
HETATM   19  O4  UNL     1      -4.545  -1.615  -2.931  1.00  0.00           O  
HETATM   20  O5  UNL     1      -3.946   0.281  -4.028  1.00  0.00           O1-
HETATM   21  C16 UNL     1      -4.345   0.881   0.635  1.00  0.00           C  
HETATM   22  N1  UNL     1      -5.522   0.513   1.331  1.00  0.00           N1+
HETATM   23  C17 UNL     1      -5.247   0.759   2.761  1.00  0.00           C  
HETATM   24  C18 UNL     1      -5.917  -0.864   1.231  1.00  0.00           C  
HETATM   25  C19 UNL     1      -6.652   1.413   1.035  1.00  0.00           C  
HETATM   26  H1  UNL     1       6.952   0.734   3.069  1.00  0.00           H  
HETATM   27  H2  UNL     1       8.479   1.705   2.991  1.00  0.00           H  
HETATM   28  H3  UNL     1       8.486  -0.088   2.651  1.00  0.00           H  
HETATM   29  H4  UNL     1       8.638   1.612   0.649  1.00  0.00           H  
HETATM   30  H5  UNL     1       6.905   1.866   1.033  1.00  0.00           H  
HETATM   31  H6  UNL     1       8.107  -0.923   0.353  1.00  0.00           H  
HETATM   32  H7  UNL     1       6.167  -1.296  -0.839  1.00  0.00           H  
HETATM   33  H8  UNL     1       5.428   1.663  -0.118  1.00  0.00           H  
HETATM   34  H9  UNL     1       4.987   0.775  -1.588  1.00  0.00           H  
HETATM   35  H10 UNL     1       3.111   0.929   0.117  1.00  0.00           H  
HETATM   36  H11 UNL     1       4.103  -0.115   1.146  1.00  0.00           H  
HETATM   37  H12 UNL     1       3.594  -1.032  -1.757  1.00  0.00           H  
HETATM   38  H13 UNL     1       4.282  -1.862  -0.370  1.00  0.00           H  
HETATM   39  H14 UNL     1       2.312  -1.928   0.881  1.00  0.00           H  
HETATM   40  H15 UNL     1       2.056  -2.636  -0.737  1.00  0.00           H  
HETATM   41  H16 UNL     1       0.154  -1.346   0.060  1.00  0.00           H  
HETATM   42  H17 UNL     1       1.137   0.087   0.349  1.00  0.00           H  
HETATM   43  H18 UNL     1       0.562  -1.208  -2.392  1.00  0.00           H  
HETATM   44  H19 UNL     1       1.491   1.048  -2.917  1.00  0.00           H  
HETATM   45  H20 UNL     1      -0.551   1.071  -2.769  1.00  0.00           H  
HETATM   46  H21 UNL     1      -0.211   1.509  -1.100  1.00  0.00           H  
HETATM   47  H22 UNL     1      -3.866  -0.891  -0.479  1.00  0.00           H  
HETATM   48  H23 UNL     1      -5.061   1.440  -2.041  1.00  0.00           H  
HETATM   49  H24 UNL     1      -6.023  -0.058  -1.568  1.00  0.00           H  
HETATM   50  H25 UNL     1      -3.463   0.676   1.307  1.00  0.00           H  
HETATM   51  H26 UNL     1      -4.337   1.984   0.492  1.00  0.00           H  
HETATM   52  H27 UNL     1      -6.189   0.895   3.305  1.00  0.00           H  
HETATM   53  H28 UNL     1      -4.741  -0.165   3.113  1.00  0.00           H  
HETATM   54  H29 UNL     1      -4.559   1.626   2.833  1.00  0.00           H  
HETATM   55  H30 UNL     1      -6.801  -0.907   0.531  1.00  0.00           H  
HETATM   56  H31 UNL     1      -6.348  -1.248   2.203  1.00  0.00           H  
HETATM   57  H32 UNL     1      -5.125  -1.566   0.966  1.00  0.00           H  
HETATM   58  H33 UNL     1      -7.216   1.108   0.152  1.00  0.00           H  
HETATM   59  H34 UNL     1      -6.273   2.459   1.000  1.00  0.00           H  
HETATM   60  H35 UNL     1      -7.387   1.400   1.893  1.00  0.00           H  
CONECT    1    2   26   27   28
CONECT    2    3   29   30
CONECT    3    4    4   31
CONECT    4    5   32
CONECT    5    6   33   34
CONECT    6    7   35   36
CONECT    7    8   37   38
CONECT    8    9   39   40
CONECT    9   10   41   42
CONECT   10   11   12   43
CONECT   11   44
CONECT   12   13   45   46
CONECT   13   14   14   15
CONECT   15   16
CONECT   16   17   21   47
CONECT   17   18   48   49
CONECT   18   19   19   20
CONECT   21   22   50   51
CONECT   22   23   24   25
CONECT   23   52   53   54
CONECT   24   55   56   57
CONECT   25   58   59   60
END

HMDB0240760
     RDKit          3D
(9Z)-3-Hydroxydodecenoylcarnitine
 60 59  0  0  0  0  0  0  0  0999 V2000
    7.9289    0.8433    2.5529 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7140    1.1388    1.0581 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3811   -0.0921    0.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2870   -0.3039   -0.3350 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1898    0.6687   -0.4860 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8667    0.1500    0.0816 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4980   -1.0930   -0.6548 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2001   -1.6994   -0.1905 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0100   -0.7798   -0.3345 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7413   -0.3425   -1.7241 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8114    0.3525   -2.2980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4258    0.6071   -1.7562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6546   -0.0245   -1.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8017   -1.2246   -0.9755 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8103    0.7587   -1.1178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0426    0.1824   -0.6484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0327    0.3659   -1.7388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4872   -0.3568   -2.9457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5449   -1.6146   -2.9309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9460    0.2810   -4.0275 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.3446    0.8812    0.6353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5218    0.5125    1.3306 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.2468    0.7594    2.7610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9166   -0.8639    1.2307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6516    1.4125    1.0351 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9521    0.7344    3.0686 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4787    1.7054    2.9913 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4865   -0.0884    2.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6378    1.6121    0.6485 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9045    1.8659    1.0329 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1068   -0.9230    0.3527 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1671   -1.2957   -0.8391 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4282    1.6634   -0.1180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9870    0.7746   -1.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1109    0.9291    0.1169 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1028   -0.1154    1.1458 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5940   -1.0317   -1.7568 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2820   -1.8619   -0.3699 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3122   -1.9282    0.8806 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0565   -2.6364   -0.7365 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1536   -1.3460    0.0599 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1365    0.0874    0.3486 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5617   -1.2077   -2.3920 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4911    1.0482   -2.9171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5506    1.0712   -2.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2108    1.5089   -1.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8665   -0.8905   -0.4786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0608    1.4400   -2.0414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0230   -0.0576   -1.5679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4632    0.6755    1.3073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3373    1.9841    0.4916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1891    0.8945    3.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7412   -0.1645    3.1131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5590    1.6260    2.8328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8009   -0.9074    0.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3479   -1.2481    2.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1255   -1.5662    0.9658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2161    1.1076    0.1518 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2727    2.4590    1.0004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3871    1.3999    1.8928 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 16 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 22 25  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
  7 37  1  0
  7 38  1  0
  8 39  1  0
  8 40  1  0
  9 41  1  0
  9 42  1  0
 10 43  1  0
 11 44  1  0
 12 45  1  0
 12 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 21 50  1  0
 21 51  1  0
 23 52  1  0
 23 53  1  0
 23 54  1  0
 24 55  1  0
 24 56  1  0
 24 57  1  0
 25 58  1  0
 25 59  1  0
 25 60  1  0
M  CHG  2  20  -1  22   1
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
3-{[(9Z)-3-hydroxydodec-9-enoyl]oxy}-4-(trimethylammonio)butanoate	ChEBI
cis-3-Hydroxydodec-9-enoylcarnitine	ChEBI
3-{[(9Z)-3-hydroxydodec-9-enoyl]oxy}-4-(trimethylammonio)butanoic acid	Generator

Chemical Formula

C₁₉H₃₅NO₅

Average Molecular Weight

357.491

Monoisotopic Molecular Weight

357.251523231

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

[H]\C(CC)=C(/[H])CCCCCC(O)CC(=O)OC(CC([O-])=O)C[N+](C)(C)C

InChI Identifier

InChI=1S/C19H35NO5/c1-5-6-7-8-9-10-11-12-16(21)13-19(24)25-17(14-18(22)23)15-20(2,3)4/h6-7,16-17,21H,5,8-15H2,1-4H3/b7-6-

InChI Key

PKPXVGIKUXUYEF-SREVYHEPSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyl carnitines. These are organic compounds containing a fatty acid with the carboxylic acid attached to carnitine through an ester bond.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Acyl carnitines

Alternative Parents

Substituents

Acyl-carnitine
Beta-hydroxy acid
Dicarboxylic acid or derivatives
Hydroxy acid
Tetraalkylammonium salt
Quaternary ammonium salt
Carboxylic acid ester
Carboxylic acid salt
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Organic zwitterion
Organic salt
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Carbonyl group
Organic oxygen compound
Amine
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

carboxylic ester (CHEBI:73106 )
O-acylcarnitine (CHEBI:73106 )
ammonium betaine (CHEBI:73106 )

Ontology

Physiological effect

Health effect

Cancer

Breast cancer (PMID: 35710135)

Diabetes mellitus type 2 (PMID: 35710135)
Celiac disease (PMID: 35710135)
Inflammatory bowel disease (PMID: 35710135)

Circulatory system disorder

Cardiac disorder

Cardiovascular disease (PMID: 35710135)
Heart failure (PMID: 35710135)

Renal system and urinary system

Renal disorder

Renal cell carcinoma (PMID: 35710135)

Disposition

Biological location

Cell

All cells and tissues (PMID: 35710135)

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 35710135)

Excreta

Biofluid or Excreta

Urine (PMID: 35710135)

Cellular substructure

cytoplasm (PMID: 35710135)
mitochondrion matrix (PMID: 35710135)

Organelle

peroxisome (PMID: 35710135)

Source

Endogenous

Endogenous (HMDB: HMDB0240760)

Process

Not Available

Role

Biological role

Energy source (PMID: 35710135)

Industrial application

Pharmaceutical industry

Biomarker

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	210.671	30932474
DeepCCS	[M-H]-	208.313	30932474
DeepCCS	[M-2H]-	241.332	30932474
DeepCCS	[M+Na]+	217.503	30932474
AllCCS	[M+H]+	197.5	32859911
AllCCS	[M+H-H2O]+	195.2	32859911
AllCCS	[M+NH4]+	199.6	32859911
AllCCS	[M+Na]+	200.2	32859911
AllCCS	[M-H]-	194.9	32859911
AllCCS	[M+Na-2H]-	196.2	32859911
AllCCS	[M+HCOO]-	197.9	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(9Z)-3-Hydroxydodecenoylcarnitine	[H]\C(CC)=C(/[H])CCCCCC(O)CC(=O)OC(CC([O-])=O)C[N+](C)(C)C	3282.9	Standard polar	33892256
(9Z)-3-Hydroxydodecenoylcarnitine	[H]\C(CC)=C(/[H])CCCCCC(O)CC(=O)OC(CC([O-])=O)C[N+](C)(C)C	2152.7	Standard non polar	33892256
(9Z)-3-Hydroxydodecenoylcarnitine	[H]\C(CC)=C(/[H])CCCCCC(O)CC(=O)OC(CC([O-])=O)C[N+](C)(C)C	2437.9	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(9Z)-3-Hydroxydodecenoylcarnitine,1TMS,isomer #1	CC/C=C\CCCCCC(CC(=O)OC(CC(=O)[O-])C[N+](C)(C)C)O[Si](C)(C)C	2407.8	Semi standard non polar	33892256
(9Z)-3-Hydroxydodecenoylcarnitine,1TBDMS,isomer #1	CC/C=C\CCCCCC(CC(=O)OC(CC(=O)[O-])C[N+](C)(C)C)O[Si](C)(C)C(C)(C)C	2633.9	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (9Z)-3-Hydroxydodecenoylcarnitine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (9Z)-3-Hydroxydodecenoylcarnitine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9Z)-3-Hydroxydodecenoylcarnitine 10V, Positive-QTOF	splash10-0a4i-0009000000-a0a401f10c09826c97dd	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9Z)-3-Hydroxydodecenoylcarnitine 20V, Positive-QTOF	splash10-052r-9005000000-fdd404dc5e92eb24823f	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9Z)-3-Hydroxydodecenoylcarnitine 40V, Positive-QTOF	splash10-000i-9000000000-e9262cbaff8cb4ad0ba6	2021-09-23	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood
Urine

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Expected but not Quantified	Not Quantified	Adult (>18 years old)	Both	Asthma	33739820	details
Urine	Detected but not Quantified	Not Quantified	Adult (>18 years old)	Both	Asthma	33739820	details

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28639205

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71464579

PDB ID

Not Available

ChEBI ID

73106

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Ferdinandusse S, Mulders J, IJlst L, Denis S, Dacremont G, Waterham HR, Wanders RJ: Molecular cloning and expression of human carnitine octanoyltransferase: evidence for its role in the peroxisomal beta-oxidation of branched-chain fatty acids. Biochem Biophys Res Commun. 1999 Sep 16;263(1):213-8. [PubMed:10486279 ]
Sud M, Fahy E, Cotter D, Brown A, Dennis EA, Glass CK, Merrill AH Jr, Murphy RC, Raetz CR, Russell DW, Subramaniam S: LMSD: LIPID MAPS structure database. Nucleic Acids Res. 2007 Jan;35(Database issue):D527-32. doi: 10.1093/nar/gkl838. Epub 2006 Nov 10. [PubMed:17098933 ]
FRITZ IB: Action of carnitine on long chain fatty acid oxidation by liver. Am J Physiol. 1959 Aug;197:297-304. doi: 10.1152/ajplegacy.1959.197.2.297. [PubMed:13825279 ]
Violante S, Achetib N, van Roermund CWT, Hagen J, Dodatko T, Vaz FM, Waterham HR, Chen H, Baes M, Yu C, Argmann CA, Houten SM: Peroxisomes can oxidize medium- and long-chain fatty acids through a pathway involving ABCD3 and HSD17B4. FASEB J. 2019 Mar;33(3):4355-4364. doi: 10.1096/fj.201801498R. Epub 2018 Dec 12. [PubMed:30540494 ]
Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB: Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. Pharmacol Rev. 2022 Jul;74(3):506-551. doi: 10.1124/pharmrev.121.000408. [PubMed:35710135 ]

Showing metabocard for (9Z)-3-Hydroxydodecenoylcarnitine (HMDB0240760)

MOL for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

3D MOL for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

3D SDF for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

3D-SDF for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

PDB for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

3D PDB for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

SMILES for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

INCHI for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

Structure for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

3D Structure for HMDB0240760 ((9Z)-3-Hydroxydodecenoylcarnitine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra