Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 20:46:57 UTC
Update Date2021-09-26 22:50:38 UTC
HMDB IDHMDB0243531
Secondary Accession NumbersNone
Metabolite Identification
Common Name(+)-Bicuculline
Description10-{6-methyl-2H,5H,6H,7H,8H-[1,3]dioxolo[4,5-g]isoquinolin-5-yl}-3,5,11-trioxatricyclo[7.3.0.0²,⁶]dodeca-1(9),2(6),7-trien-12-one belongs to the class of organic compounds known as phthalide isoquinolines. These are organic compounds with a structure characterized by an isoquinoline moiety linked to phthalide. 10-{6-methyl-2H,5H,6H,7H,8H-[1,3]dioxolo[4,5-g]isoquinolin-5-yl}-3,5,11-trioxatricyclo[7.3.0.0²,⁶]dodeca-1(9),2(6),7-trien-12-one is a very strong basic compound (based on its pKa). This compound has been identified in human blood as reported by (PMID: 31557052 ). (+)-bicuculline is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (+)-Bicuculline is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC20H17NO6
Average Molecular Weight367.357
Monoisotopic Molecular Weight367.105587271
IUPAC Name10-{6-methyl-2H,5H,6H,7H,8H-[1,3]dioxolo[4,5-g]isoquinolin-5-yl}-3,5,11-trioxatricyclo[7.3.0.0²,⁶]dodeca-1,6,8-trien-12-one
Traditional Name10-{6-methyl-2H,5H,7H,8H-[1,3]dioxolo[4,5-g]isoquinolin-5-yl}-3,5,11-trioxatricyclo[7.3.0.0²,⁶]dodeca-1,6,8-trien-12-one
CAS Registry NumberNot Available
SMILES
CN1CCC2=CC3=C(OCO3)C=C2C1C1OC(=O)C2=C3OCOC3=CC=C12
InChI Identifier
InChI=1S/C20H17NO6/c1-21-5-4-10-6-14-15(25-8-24-14)7-12(10)17(21)18-11-2-3-13-19(26-9-23-13)16(11)20(22)27-18/h2-3,6-7,17-18H,4-5,8-9H2,1H3
InChI KeyIYGYMKDQCDOMRE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phthalide isoquinolines. These are organic compounds with a structure characterized by an isoquinoline moiety linked to phthalide.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassPhthalide isoquinolines
Sub ClassNot Available
Direct ParentPhthalide isoquinolines
Alternative Parents
Substituents
  • Phthalide isoquinoline
  • Benzofuranone
  • Phthalide
  • Isobenzofuranone
  • Tetrahydroisoquinoline
  • Benzodioxole
  • Isocoumaran
  • Aralkylamine
  • Benzenoid
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Lactone
  • Tertiary amine
  • Tertiary aliphatic amine
  • Monocarboxylic acid or derivatives
  • Acetal
  • Carboxylic acid derivative
  • Oxacycle
  • Organoheterocyclic compound
  • Azacycle
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.76ALOGPS
logP2.68ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)12.96ChemAxon
pKa (Strongest Basic)7.26ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area66.46 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity93.45 m³·mol⁻¹ChemAxon
Polarizability37.23 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-213.82530932474
DeepCCS[M+Na]+189.05230932474
AllCCS[M+H]+185.732859911
AllCCS[M+H-H2O]+183.032859911
AllCCS[M+NH4]+188.232859911
AllCCS[M+Na]+188.932859911
AllCCS[M-H]-182.632859911
AllCCS[M+Na-2H]-181.632859911
AllCCS[M+HCOO]-180.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(+)-BicucullineCN1CCC2=CC3=C(OCO3)C=C2C1C1OC(=O)C2=C3OCOC3=CC=C124391.6Standard polar33892256
(+)-BicucullineCN1CCC2=CC3=C(OCO3)C=C2C1C1OC(=O)C2=C3OCOC3=CC=C122966.7Standard non polar33892256
(+)-BicucullineCN1CCC2=CC3=C(OCO3)C=C2C1C1OC(=O)C2=C3OCOC3=CC=C123129.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Bicuculline GC-MS (Non-derivatized) - 70eV, Positivesplash10-01ox-1900000000-490548d0b874a11683012021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Bicuculline GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - (+)-Bicuculline 15V, Positive-QTOFsplash10-066r-0009000000-26fcc3399c1ce24945e62021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (+)-Bicuculline 10V, Positive-QTOFsplash10-014i-0009000000-d447900627f81e45ce082021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (+)-Bicuculline 20V, Positive-QTOFsplash10-0a4i-0029000000-f8cf58e7a0f5d74585352021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (+)-Bicuculline 30V, Positive-QTOFsplash10-004j-0091000000-95c418164c280b02210c2021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Bicuculline 10V, Positive-QTOFsplash10-014i-0009000000-fe0569159b6b1cd8e1312021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Bicuculline 20V, Positive-QTOFsplash10-000i-0109000000-740135b5a13e3f6038e92021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Bicuculline 40V, Positive-QTOFsplash10-0fmu-0559000000-9a1af5c51cf170f683202021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Bicuculline 10V, Negative-QTOFsplash10-014i-0009000000-9522821f93c8d52628312021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Bicuculline 20V, Negative-QTOFsplash10-014i-0009000000-f7bb421afdc22bd7ff252021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Bicuculline 40V, Negative-QTOFsplash10-0w99-0409000000-e02ebd243d034ce59a7a2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound2376
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]