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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-10 23:38:30 UTC

Update Date

2021-09-26 22:55:49 UTC

HMDB ID

HMDB0246625

Secondary Accession Numbers

None

Metabolite Identification

Common Name

4'-Azidocytidine

Description

4'-Azidocytidine belongs to the class of organic compounds known as glycosylamines. Glycosylamines are compounds consisting of an amine with a beta-N-glycosidic bond to a carbohydrate, thus forming a cyclic hemiaminal ether bond (alpha-amino ether). Based on a literature review a significant number of articles have been published on 4'-Azidocytidine. This compound has been identified in human blood as reported by (PMID: 31557052 ). 4'-azidocytidine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 4'-Azidocytidine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0246625
     RDKit          3D
4'-Azidocytidine
 32 33  0  0  0  0  0  0  0  0999 V2000
   -3.5108    3.0647    0.2064 N   0  0  0  0  0  2  0  0  0  0  0  0
   -3.2655    1.9776   -0.3194 N   0  0  0  0  0  4  0  0  0  0  0  0
   -2.7496    1.1593   -1.0752 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1231   -0.0386   -0.5567 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9760   -1.2087   -0.9924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2505   -1.0194   -0.4533 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8418   -0.0929   -1.0366 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0033   -0.4133    0.0181 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3686   -0.1615   -0.2192 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2730   -1.1764   -0.1753 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6168   -0.9810   -0.4000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0869    0.2812   -0.6817 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4784    0.5307   -0.9224 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1859    1.2746   -0.7224 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8869    1.0538   -0.4998 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0721    2.0086   -0.5463 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6060    0.3650    1.1573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1241   -0.0312    2.3902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0571   -0.0470    0.9551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9374    0.8207    1.5491 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0292   -1.2899   -2.0963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5069   -2.1357   -0.6097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1888   -1.2799    0.5017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1601   -1.4881    0.2408 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8880   -2.1806    0.0504 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3385   -1.7807   -0.3667 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0977    0.8935   -0.1585 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8204    0.3328   -1.8784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5823    1.4558    1.0095 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3103    0.7635    2.8045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1365   -1.0844    1.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3812    0.4277    2.3380 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  4  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
  8 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19  4  1  0
 15  9  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  8 24  1  0
 10 25  1  0
 11 26  1  0
 13 27  1  0
 13 28  1  0
 17 29  1  0
 18 30  1  0
 19 31  1  0
 20 32  1  0
M  CHG  2   1  -1   2   1
M  END


  Mrv1652309112101382D          

 20 21  0  0  0  0            999 V2000
   -0.2754   -1.0679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7604   -0.4005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4248    0.3532    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3957    0.4394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7312    1.1931    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8806   -0.2280    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5450   -0.9817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0300   -1.6491    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9097    1.0206    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7347    1.0206    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9897    1.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222    2.2902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6548    1.8053    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7272    3.0089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5522    3.0176    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9172    3.0089    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3372    3.7190    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   -1.7572    4.4292    0.0000 N   0  5  0  0  0  0  0  0  0  0  0  0
   -2.7743    2.0602    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2197    0.3532    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  0  0  0  0
  3  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  9 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 12 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  2  0  0  0  0
 11 19  1  0  0  0  0
 10 20  1  0  0  0  0
M  CHG  2  17   1  18  -1
M  END
> <DATABASE_ID>
HMDB0246625

> <DATABASE_NAME>
hmdb

> <SMILES>
NC1=NC(=O)N(C=C1)C1OC(CO)(N=[N+]=[N-])C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C9H12N6O5/c10-4-1-2-15(8(19)12-4)7-5(17)6(18)9(3-16,20-7)13-14-11/h1-2,5-7,16-18H,3H2,(H2,10,12,19)

> <INCHI_KEY>
ODLGMSQBFONGNG-UHFFFAOYSA-N

> <FORMULA>
C9H12N6O5

> <MOLECULAR_WEIGHT>
284.232

> <EXACT_MASS>
284.08691751

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
25.048153480197755

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-amino-1-[5-azido-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one

> <ALOGPS_LOGP>
-0.94

> <JCHEM_LOGP>
-2.1668568949999996

> <ALOGPS_LOGS>
-1.11

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.434950320261652

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.160754815256949

> <JCHEM_PKA_STRONGEST_BASIC>
-0.33632564344403504

> <JCHEM_POLAR_SURFACE_AREA>
158.04

> <JCHEM_REFRACTIVITY>
62.30460000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.21e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-amino-1-[5-azido-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0246625
     RDKit          3D
4'-Azidocytidine
 32 33  0  0  0  0  0  0  0  0999 V2000
   -3.5108    3.0647    0.2064 N   0  0  0  0  0  2  0  0  0  0  0  0
   -3.2655    1.9776   -0.3194 N   0  0  0  0  0  4  0  0  0  0  0  0
   -2.7496    1.1593   -1.0752 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1231   -0.0386   -0.5567 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9760   -1.2087   -0.9924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2505   -1.0194   -0.4533 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8418   -0.0929   -1.0366 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0033   -0.4133    0.0181 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3686   -0.1615   -0.2192 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2730   -1.1764   -0.1753 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6168   -0.9810   -0.4000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0869    0.2812   -0.6817 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4784    0.5307   -0.9224 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1859    1.2746   -0.7224 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8869    1.0538   -0.4998 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0721    2.0086   -0.5463 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6060    0.3650    1.1573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1241   -0.0312    2.3902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0571   -0.0470    0.9551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9374    0.8207    1.5491 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0292   -1.2899   -2.0963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5069   -2.1357   -0.6097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1888   -1.2799    0.5017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1601   -1.4881    0.2408 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8880   -2.1806    0.0504 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3385   -1.7807   -0.3667 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0977    0.8935   -0.1585 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8204    0.3328   -1.8784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5823    1.4558    1.0095 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3103    0.7635    2.8045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1365   -1.0844    1.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3812    0.4277    2.3380 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  4  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
  8 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19  4  1  0
 15  9  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  8 24  1  0
 10 25  1  0
 11 26  1  0
 13 27  1  0
 13 28  1  0
 17 29  1  0
 18 30  1  0
 19 31  1  0
 20 32  1  0
M  CHG  2   1  -1   2   1
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -0.514  -1.993   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.419  -0.748   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      -0.793   0.659   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       0.739   0.820   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.365   2.227   0.000  0.00  0.00           O+0
HETATM    6  N   UNK     0       1.644  -0.426   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       1.017  -1.832   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       1.923  -3.078   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -1.698   1.905   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.238   1.905   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.714   3.370   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.468   4.275   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.222   3.370   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -3.224   5.617   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -4.764   5.633   0.000  0.00  0.00           O+0
HETATM   16  N   UNK     0      -1.712   5.617   0.000  0.00  0.00           N+0
HETATM   17  N   UNK     0      -2.496   6.942   0.000  0.00  0.00           N+1
HETATM   18  N   UNK     0      -3.280   8.268   0.000  0.00  0.00           N-1
HETATM   19  O   UNK     0      -5.179   3.846   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      -4.143   0.659   0.000  0.00  0.00           O+0
CONECT    1    2    7                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    9                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    1    8                                                  
CONECT    8    7                                                            
CONECT    9    3   10   13                                                  
CONECT   10    9   11   20                                                  
CONECT   11   10   12   19                                                  
CONECT   12   11   13   14   16                                             
CONECT   13   12    9                                                       
CONECT   14   12   15                                                       
CONECT   15   14                                                            
CONECT   16   12   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19   11                                                            
CONECT   20   10                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   42    0
END

COMPND    HMDB0246625
HETATM    1  N1  UNL     1      -3.511   3.065   0.206  1.00  0.00           N1-
HETATM    2  N2  UNL     1      -3.266   1.978  -0.319  1.00  0.00           N1+
HETATM    3  N3  UNL     1      -2.750   1.159  -1.075  1.00  0.00           N  
HETATM    4  C1  UNL     1      -2.123  -0.039  -0.557  1.00  0.00           C  
HETATM    5  C2  UNL     1      -2.976  -1.209  -0.992  1.00  0.00           C  
HETATM    6  O1  UNL     1      -4.250  -1.019  -0.453  1.00  0.00           O  
HETATM    7  O2  UNL     1      -0.842  -0.093  -1.037  1.00  0.00           O  
HETATM    8  C3  UNL     1       0.003  -0.413   0.018  1.00  0.00           C  
HETATM    9  N4  UNL     1       1.369  -0.162  -0.219  1.00  0.00           N  
HETATM   10  C4  UNL     1       2.273  -1.176  -0.175  1.00  0.00           C  
HETATM   11  C5  UNL     1       3.617  -0.981  -0.400  1.00  0.00           C  
HETATM   12  C6  UNL     1       4.087   0.281  -0.682  1.00  0.00           C  
HETATM   13  N5  UNL     1       5.478   0.531  -0.922  1.00  0.00           N  
HETATM   14  N6  UNL     1       3.186   1.275  -0.722  1.00  0.00           N  
HETATM   15  C7  UNL     1       1.887   1.054  -0.500  1.00  0.00           C  
HETATM   16  O3  UNL     1       1.072   2.009  -0.546  1.00  0.00           O  
HETATM   17  C8  UNL     1      -0.606   0.365   1.157  1.00  0.00           C  
HETATM   18  O4  UNL     1      -0.124  -0.031   2.390  1.00  0.00           O  
HETATM   19  C9  UNL     1      -2.057  -0.047   0.955  1.00  0.00           C  
HETATM   20  O5  UNL     1      -2.937   0.821   1.549  1.00  0.00           O  
HETATM   21  H1  UNL     1      -3.029  -1.290  -2.096  1.00  0.00           H  
HETATM   22  H2  UNL     1      -2.507  -2.136  -0.610  1.00  0.00           H  
HETATM   23  H3  UNL     1      -4.189  -1.280   0.502  1.00  0.00           H  
HETATM   24  H4  UNL     1      -0.160  -1.488   0.241  1.00  0.00           H  
HETATM   25  H5  UNL     1       1.888  -2.181   0.050  1.00  0.00           H  
HETATM   26  H6  UNL     1       4.338  -1.781  -0.367  1.00  0.00           H  
HETATM   27  H7  UNL     1       6.098   0.894  -0.159  1.00  0.00           H  
HETATM   28  H8  UNL     1       5.820   0.333  -1.878  1.00  0.00           H  
HETATM   29  H9  UNL     1      -0.582   1.456   1.010  1.00  0.00           H  
HETATM   30  H10 UNL     1       0.310   0.763   2.805  1.00  0.00           H  
HETATM   31  H11 UNL     1      -2.137  -1.084   1.348  1.00  0.00           H  
HETATM   32  H12 UNL     1      -3.381   0.428   2.338  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    3
CONECT    3    4
CONECT    4    5    7   19
CONECT    5    6   21   22
CONECT    6   23
CONECT    7    8
CONECT    8    9   17   24
CONECT    9   10   15
CONECT   10   11   11   25
CONECT   11   12   26
CONECT   12   13   14   14
CONECT   13   27   28
CONECT   14   15
CONECT   15   16   16
CONECT   17   18   19   29
CONECT   18   30
CONECT   19   20   31
CONECT   20   32
END

HMDB0246625
     RDKit          3D
4'-Azidocytidine
 32 33  0  0  0  0  0  0  0  0999 V2000
   -3.5108    3.0647    0.2064 N   0  0  0  0  0  2  0  0  0  0  0  0
   -3.2655    1.9776   -0.3194 N   0  0  0  0  0  4  0  0  0  0  0  0
   -2.7496    1.1593   -1.0752 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1231   -0.0386   -0.5567 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9760   -1.2087   -0.9924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2505   -1.0194   -0.4533 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8418   -0.0929   -1.0366 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0033   -0.4133    0.0181 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3686   -0.1615   -0.2192 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2730   -1.1764   -0.1753 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6168   -0.9810   -0.4000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0869    0.2812   -0.6817 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4784    0.5307   -0.9224 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1859    1.2746   -0.7224 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8869    1.0538   -0.4998 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0721    2.0086   -0.5463 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6060    0.3650    1.1573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1241   -0.0312    2.3902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0571   -0.0470    0.9551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9374    0.8207    1.5491 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0292   -1.2899   -2.0963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5069   -2.1357   -0.6097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1888   -1.2799    0.5017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1601   -1.4881    0.2408 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8880   -2.1806    0.0504 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3385   -1.7807   -0.3667 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0977    0.8935   -0.1585 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8204    0.3328   -1.8784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5823    1.4558    1.0095 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3103    0.7635    2.8045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1365   -1.0844    1.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3812    0.4277    2.3380 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  4  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
  8 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19  4  1  0
 15  9  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  8 24  1  0
 10 25  1  0
 11 26  1  0
 13 27  1  0
 13 28  1  0
 17 29  1  0
 18 30  1  0
 19 31  1  0
 20 32  1  0
M  CHG  2   1  -1   2   1
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₉H₁₂N₆O₅

Average Molecular Weight

284.232

Monoisotopic Molecular Weight

284.08691751

IUPAC Name

4-amino-1-[5-azido-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one

Traditional Name

4-amino-1-[5-azido-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one

CAS Registry Number

Not Available

SMILES

NC1=NC(=O)N(C=C1)C1OC(CO)(N=[N+]=[N-])C(O)C1O

InChI Identifier

InChI=1S/C9H12N6O5/c10-4-1-2-15(8(19)12-4)7-5(17)6(18)9(3-16,20-7)13-14-11/h1-2,5-7,16-18H,3H2,(H2,10,12,19)

InChI Key

ODLGMSQBFONGNG-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as glycosylamines. Glycosylamines are compounds consisting of an amine with a beta-N-glycosidic bond to a carbohydrate, thus forming a cyclic hemiaminal ether bond (alpha-amino ether).

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Glycosylamines

Alternative Parents

Substituents

N-glycosyl compound
Pentose monosaccharide
Aminopyrimidine
Pyrimidone
Hydropyrimidine
Imidolactam
Monosaccharide
Pyrimidine
Heteroaromatic compound
Oxolane
1,2-diol
Azo compound
Azo imide
Secondary alcohol
Oxacycle
Azacycle
Organoheterocyclic compound
Organonitrogen compound
Organic salt
Amine
Alcohol
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Organic zwitterion
Primary amine
Primary alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-0.94	ALOGPS
logP	-2.2	ChemAxon
logS	-1.1	ALOGPS
pKa (Strongest Acidic)	12.16	ChemAxon
pKa (Strongest Basic)	-0.34	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	158.04 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	62.3 m³·mol⁻¹	ChemAxon
Polarizability	25.05 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	165.163	30932474
DeepCCS	[M-H]-	162.221	30932474
DeepCCS	[M-2H]-	197.599	30932474
DeepCCS	[M+Na]+	173.891	30932474
AllCCS	[M+H]+	160.5	32859911
AllCCS	[M+H-H2O]+	157.0	32859911
AllCCS	[M+NH4]+	163.7	32859911
AllCCS	[M+Na]+	164.6	32859911
AllCCS	[M-H]-	159.0	32859911
AllCCS	[M+Na-2H]-	158.2	32859911
AllCCS	[M+HCOO]-	157.4	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Predicted by Siyang on May 30, 2022	9.2563 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	7.0 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	424.7 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	245.2 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	50.4 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	159.3 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	55.9 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	300.3 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	262.7 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	746.7 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	568.9 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	47.2 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	766.2 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	178.3 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	203.8 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	613.5 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	422.3 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	268.7 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
4'-Azidocytidine	NC1=NC(=O)N(C=C1)C1OC(CO)(N=[N+]=[N-])C(O)C1O	3981.5	Standard polar	33892256
4'-Azidocytidine	NC1=NC(=O)N(C=C1)C1OC(CO)(N=[N+]=[N-])C(O)C1O	2436.7	Standard non polar	33892256
4'-Azidocytidine	NC1=NC(=O)N(C=C1)C1OC(CO)(N=[N+]=[N-])C(O)C1O	2836.6	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
4'-Azidocytidine,4TMS,isomer #1	C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)(N=[N+]=[N-])C(O[Si](C)(C)C)C2O[Si](C)(C)C)C=C1	2694.5	Semi standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #1	C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)(N=[N+]=[N-])C(O[Si](C)(C)C)C2O[Si](C)(C)C)C=C1	2677.2	Standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #1	C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)(N=[N+]=[N-])C(O[Si](C)(C)C)C2O[Si](C)(C)C)C=C1	3679.2	Standard polar	33892256
4'-Azidocytidine,4TMS,isomer #2	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O[Si](C)(C)C)C1O	2669.3	Semi standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #2	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O[Si](C)(C)C)C1O	2760.3	Standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #2	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O[Si](C)(C)C)C1O	3624.7	Standard polar	33892256
4'-Azidocytidine,4TMS,isomer #3	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O)C1O[Si](C)(C)C	2673.6	Semi standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #3	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O)C1O[Si](C)(C)C	2780.7	Standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #3	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O)C1O[Si](C)(C)C	3614.7	Standard polar	33892256
4'-Azidocytidine,4TMS,isomer #4	C[Si](C)(C)OC1C(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)OC(CO)(N=[N+]=[N-])C1O[Si](C)(C)C	2670.8	Semi standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #4	C[Si](C)(C)OC1C(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)OC(CO)(N=[N+]=[N-])C1O[Si](C)(C)C	2746.1	Standard non polar	33892256
4'-Azidocytidine,4TMS,isomer #4	C[Si](C)(C)OC1C(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)OC(CO)(N=[N+]=[N-])C1O[Si](C)(C)C	3580.7	Standard polar	33892256
4'-Azidocytidine,5TMS,isomer #1	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O[Si](C)(C)C)C1O[Si](C)(C)C	2664.3	Semi standard non polar	33892256
4'-Azidocytidine,5TMS,isomer #1	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O[Si](C)(C)C)C1O[Si](C)(C)C	2711.3	Standard non polar	33892256
4'-Azidocytidine,5TMS,isomer #1	C[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C(O[Si](C)(C)C)C1O[Si](C)(C)C	3416.8	Standard polar	33892256
4'-Azidocytidine,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)(N=[N+]=[N-])C(O[Si](C)(C)C(C)(C)C)C2O[Si](C)(C)C(C)(C)C)C=C1	3563.0	Semi standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)(N=[N+]=[N-])C(O[Si](C)(C)C(C)(C)C)C2O[Si](C)(C)C(C)(C)C)C=C1	3410.6	Standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)(N=[N+]=[N-])C(O[Si](C)(C)C(C)(C)C)C2O[Si](C)(C)C(C)(C)C)C=C1	3850.2	Standard polar	33892256
4'-Azidocytidine,4TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O[Si](C)(C)C(C)(C)C)C1O	3490.4	Semi standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O[Si](C)(C)C(C)(C)C)C1O	3507.7	Standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O[Si](C)(C)C(C)(C)C)C1O	3777.8	Standard polar	33892256
4'-Azidocytidine,4TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O)C1O[Si](C)(C)C(C)(C)C	3511.7	Semi standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O)C1O[Si](C)(C)C(C)(C)C	3517.1	Standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O)C1O[Si](C)(C)C(C)(C)C	3770.6	Standard polar	33892256
4'-Azidocytidine,4TBDMS,isomer #4	CC(C)(C)[Si](C)(C)OC1C(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)OC(CO)(N=[N+]=[N-])C1O[Si](C)(C)C(C)(C)C	3501.9	Semi standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #4	CC(C)(C)[Si](C)(C)OC1C(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)OC(CO)(N=[N+]=[N-])C1O[Si](C)(C)C(C)(C)C	3473.2	Standard non polar	33892256
4'-Azidocytidine,4TBDMS,isomer #4	CC(C)(C)[Si](C)(C)OC1C(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)OC(CO)(N=[N+]=[N-])C1O[Si](C)(C)C(C)(C)C	3731.9	Standard polar	33892256
4'-Azidocytidine,5TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C	3651.8	Semi standard non polar	33892256
4'-Azidocytidine,5TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C	3591.2	Standard non polar	33892256
4'-Azidocytidine,5TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OCC1(N=[N+]=[N-])OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C	3647.4	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (Non-derivatized) - 70eV, Positive	splash10-1159-9720000000-3c0bc9f3d6efcbdf5ebf	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_2_7) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_3_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_3_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_3_4) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_3_5) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_3_6) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TMS_3_7) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TBDMS_1_4) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4'-Azidocytidine GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

11479627

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

22593600

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for 4'-Azidocytidine (HMDB0246625)

MOL for HMDB0246625 (4'-Azidocytidine)

3D MOL for HMDB0246625 (4'-Azidocytidine)

3D SDF for HMDB0246625 (4'-Azidocytidine)

3D-SDF for HMDB0246625 (4'-Azidocytidine)

PDB for HMDB0246625 (4'-Azidocytidine)

3D PDB for HMDB0246625 (4'-Azidocytidine)

SMILES for HMDB0246625 (4'-Azidocytidine)

INCHI for HMDB0246625 (4'-Azidocytidine)

Structure for HMDB0246625 (4'-Azidocytidine)

3D Structure for HMDB0246625 (4'-Azidocytidine)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

NMR Spectra