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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 00:03:56 UTC

Update Date

2021-09-26 22:56:30 UTC

HMDB ID

HMDB0247048

Secondary Accession Numbers

None

Metabolite Identification

Common Name

6-Chloromelatonin

Description

6-Chloromelatonin belongs to the class of organic compounds known as 3-alkylindoles. 3-alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position. Based on a literature review a significant number of articles have been published on 6-Chloromelatonin. This compound has been identified in human blood as reported by (PMID: 31557052 ). 6-chloromelatonin is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 6-Chloromelatonin is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0247048
     RDKit          3D
6-Chloromelatonin
 33 34  0  0  0  0  0  0  0  0999 V2000
   -3.0296    2.1640   -0.4683 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3547    1.0064    0.2627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4389   -0.0573    0.2428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2551    0.0214   -0.4549 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3540   -1.0419   -0.4715 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8681   -1.2507   -1.1147 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5608   -0.2277   -1.8874 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6484    0.4831   -1.0948 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3429    1.0710    0.0850 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0349    1.6640    1.2749 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6139    1.5865    1.8484 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8301    2.3070    2.0214 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3281   -2.5195   -0.8260 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4224   -3.0967   -0.0191 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6050   -2.2125    0.2054 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7855   -2.2919    0.9062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7007   -1.2339    0.9324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2156   -1.3358    1.8057 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -3.0516    2.0041   -1.5844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6871    3.0510   -0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9985    2.4455   -0.2037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0067    0.9116   -1.0008 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0418   -0.6283   -2.8142 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8440    0.5381   -2.2158 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1550    1.1702   -1.8648 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4366   -0.3558   -0.9800 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6558    1.4732    0.2029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1016    2.0852    1.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6085    2.0444    2.8316 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4115    0.4679    1.8706 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2702   -2.9814   -1.1819 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5178   -4.0670    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0062   -3.1941    1.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
  6 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17  3  1  0
 15  5  2  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
  8 26  1  0
  9 27  1  0
 11 28  1  0
 11 29  1  0
 11 30  1  0
 13 31  1  0
 14 32  1  0
 16 33  1  0
M  END


  Mrv1652309112102042D          

 18 19  0  0  0  0            999 V2000
    2.7791   -0.8221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4935   -0.4096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4935    0.4154    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2080   -0.8221    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9225   -0.4096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6370   -0.8221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3514   -0.4096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4377    0.4109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2446    0.5824    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.6571   -0.1320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4641   -0.3036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7190   -1.0882    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1670   -1.7013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3600   -1.5298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1051   -0.7451    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4220   -2.4859    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2289   -2.6574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5260   -1.2597    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
  7 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 18  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0247048

> <DATABASE_NAME>
hmdb

> <SMILES>
COC1=C(Cl)C=C2NC=C(CCNC(C)=O)C2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C13H15ClN2O2/c1-8(17)15-4-3-9-7-16-12-6-11(14)13(18-2)5-10(9)12/h5-7,16H,3-4H2,1-2H3,(H,15,17)

> <INCHI_KEY>
LUINDDOUWHRIPW-UHFFFAOYSA-N

> <FORMULA>
C13H15ClN2O2

> <MOLECULAR_WEIGHT>
266.73

> <EXACT_MASS>
266.0822054

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
27.76387080147497

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
N-[2-(6-chloro-5-methoxy-1H-indol-3-yl)ethyl]acetamide

> <ALOGPS_LOGP>
2.48

> <JCHEM_LOGP>
1.7516574636666673

> <ALOGPS_LOGS>
-3.83

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.289094853186906

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.28904767075267

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5686456453792466

> <JCHEM_POLAR_SURFACE_AREA>
54.120000000000005

> <JCHEM_REFRACTIVITY>
71.0847

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.92e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-[2-(6-chloro-5-methoxy-1H-indol-3-yl)ethyl]acetamide

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0247048
     RDKit          3D
6-Chloromelatonin
 33 34  0  0  0  0  0  0  0  0999 V2000
   -3.0296    2.1640   -0.4683 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3547    1.0064    0.2627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4389   -0.0573    0.2428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2551    0.0214   -0.4549 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3540   -1.0419   -0.4715 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8681   -1.2507   -1.1147 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5608   -0.2277   -1.8874 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6484    0.4831   -1.0948 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3429    1.0710    0.0850 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0349    1.6640    1.2749 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6139    1.5865    1.8484 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8301    2.3070    2.0214 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3281   -2.5195   -0.8260 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4224   -3.0967   -0.0191 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6050   -2.2125    0.2054 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7855   -2.2919    0.9062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7007   -1.2339    0.9324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2156   -1.3358    1.8057 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -3.0516    2.0041   -1.5844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6871    3.0510   -0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9985    2.4455   -0.2037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0067    0.9116   -1.0008 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0418   -0.6283   -2.8142 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8440    0.5381   -2.2158 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1550    1.1702   -1.8648 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4366   -0.3558   -0.9800 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6558    1.4732    0.2029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1016    2.0852    1.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6085    2.0444    2.8316 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4115    0.4679    1.8706 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2702   -2.9814   -1.1819 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5178   -4.0670    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0062   -3.1941    1.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
  6 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17  3  1  0
 15  5  2  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
  8 26  1  0
  9 27  1  0
 11 28  1  0
 11 29  1  0
 11 30  1  0
 13 31  1  0
 14 32  1  0
 16 33  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0       5.188  -1.535   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.521  -0.765   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       6.521   0.775   0.000  0.00  0.00           O+0
HETATM    4  N   UNK     0       7.855  -1.535   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       9.189  -0.765   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.522  -1.535   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.856  -0.765   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.017   0.767   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      13.523   1.087   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      14.293  -0.246   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      15.800  -0.567   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      16.276  -2.031   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      15.245  -3.176   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      13.739  -2.856   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.263  -1.391   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      15.721  -4.640   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      17.227  -4.961   0.000  0.00  0.00           C+0
HETATM   18 Cl   UNK     0      17.782  -2.351   0.000  0.00  0.00          Cl+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   15                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   18                                                  
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14   10    7                                                  
CONECT   16   13   17                                                       
CONECT   17   16                                                            
CONECT   18   12                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

COMPND    HMDB0247048
HETATM    1  C1  UNL     1      -3.030   2.164  -0.468  1.00  0.00           C  
HETATM    2  O1  UNL     1      -3.355   1.006   0.263  1.00  0.00           O  
HETATM    3  C2  UNL     1      -2.439  -0.057   0.243  1.00  0.00           C  
HETATM    4  C3  UNL     1      -1.255   0.021  -0.455  1.00  0.00           C  
HETATM    5  C4  UNL     1      -0.354  -1.042  -0.471  1.00  0.00           C  
HETATM    6  C5  UNL     1       0.868  -1.251  -1.115  1.00  0.00           C  
HETATM    7  C6  UNL     1       1.561  -0.228  -1.887  1.00  0.00           C  
HETATM    8  C7  UNL     1       2.648   0.483  -1.095  1.00  0.00           C  
HETATM    9  N1  UNL     1       2.343   1.071   0.085  1.00  0.00           N  
HETATM   10  C8  UNL     1       2.035   1.664   1.275  1.00  0.00           C  
HETATM   11  C9  UNL     1       0.614   1.586   1.848  1.00  0.00           C  
HETATM   12  O2  UNL     1       2.830   2.307   2.021  1.00  0.00           O  
HETATM   13  C10 UNL     1       1.328  -2.520  -0.826  1.00  0.00           C  
HETATM   14  N2  UNL     1       0.422  -3.097  -0.019  1.00  0.00           N  
HETATM   15  C11 UNL     1      -0.605  -2.212   0.205  1.00  0.00           C  
HETATM   16  C12 UNL     1      -1.785  -2.292   0.906  1.00  0.00           C  
HETATM   17  C13 UNL     1      -2.701  -1.234   0.932  1.00  0.00           C  
HETATM   18 CL1  UNL     1      -4.216  -1.336   1.806  1.00  0.00          CL  
HETATM   19  H1  UNL     1      -3.052   2.004  -1.584  1.00  0.00           H  
HETATM   20  H2  UNL     1      -3.687   3.051  -0.219  1.00  0.00           H  
HETATM   21  H3  UNL     1      -1.999   2.446  -0.204  1.00  0.00           H  
HETATM   22  H4  UNL     1      -1.007   0.912  -1.001  1.00  0.00           H  
HETATM   23  H5  UNL     1       2.042  -0.628  -2.814  1.00  0.00           H  
HETATM   24  H6  UNL     1       0.844   0.538  -2.216  1.00  0.00           H  
HETATM   25  H7  UNL     1       3.155   1.170  -1.865  1.00  0.00           H  
HETATM   26  H8  UNL     1       3.437  -0.356  -0.980  1.00  0.00           H  
HETATM   27  H9  UNL     1       3.656   1.473   0.203  1.00  0.00           H  
HETATM   28  H10 UNL     1      -0.102   2.085   1.199  1.00  0.00           H  
HETATM   29  H11 UNL     1       0.609   2.044   2.832  1.00  0.00           H  
HETATM   30  H12 UNL     1       0.412   0.468   1.871  1.00  0.00           H  
HETATM   31  H13 UNL     1       2.270  -2.981  -1.182  1.00  0.00           H  
HETATM   32  H14 UNL     1       0.518  -4.067   0.358  1.00  0.00           H  
HETATM   33  H15 UNL     1      -2.006  -3.194   1.451  1.00  0.00           H  
CONECT    1    2   19   20   21
CONECT    2    3
CONECT    3    4    4   17
CONECT    4    5   22
CONECT    5    6   15   15
CONECT    6    7   13   13
CONECT    7    8   23   24
CONECT    8    9   25   26
CONECT    9   10   27
CONECT   10   11   12   12
CONECT   11   28   29   30
CONECT   13   14   31
CONECT   14   15   32
CONECT   15   16
CONECT   16   17   17   33
CONECT   17   18
END

HMDB0247048
     RDKit          3D
6-Chloromelatonin
 33 34  0  0  0  0  0  0  0  0999 V2000
   -3.0296    2.1640   -0.4683 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3547    1.0064    0.2627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4389   -0.0573    0.2428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2551    0.0214   -0.4549 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3540   -1.0419   -0.4715 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8681   -1.2507   -1.1147 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5608   -0.2277   -1.8874 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6484    0.4831   -1.0948 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3429    1.0710    0.0850 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0349    1.6640    1.2749 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6139    1.5865    1.8484 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8301    2.3070    2.0214 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3281   -2.5195   -0.8260 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4224   -3.0967   -0.0191 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6050   -2.2125    0.2054 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7855   -2.2919    0.9062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7007   -1.2339    0.9324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2156   -1.3358    1.8057 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -3.0516    2.0041   -1.5844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6871    3.0510   -0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9985    2.4455   -0.2037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0067    0.9116   -1.0008 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0418   -0.6283   -2.8142 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8440    0.5381   -2.2158 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1550    1.1702   -1.8648 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4366   -0.3558   -0.9800 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6558    1.4732    0.2029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1016    2.0852    1.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6085    2.0444    2.8316 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4115    0.4679    1.8706 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2702   -2.9814   -1.1819 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5178   -4.0670    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0062   -3.1941    1.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
  6 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17  3  1  0
 15  5  2  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
  8 26  1  0
  9 27  1  0
 11 28  1  0
 11 29  1  0
 11 30  1  0
 13 31  1  0
 14 32  1  0
 16 33  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₁₃H₁₅ClN₂O₂

Average Molecular Weight

266.73

Monoisotopic Molecular Weight

266.0822054

IUPAC Name

N-[2-(6-chloro-5-methoxy-1H-indol-3-yl)ethyl]acetamide

Traditional Name

N-[2-(6-chloro-5-methoxy-1H-indol-3-yl)ethyl]acetamide

CAS Registry Number

Not Available

SMILES

COC1=C(Cl)C=C2NC=C(CCNC(C)=O)C2=C1

InChI Identifier

InChI=1S/C13H15ClN2O2/c1-8(17)15-4-3-9-7-16-12-6-11(14)13(18-2)5-10(9)12/h5-7,16H,3-4H2,1-2H3,(H,15,17)

InChI Key

LUINDDOUWHRIPW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indoles

Direct Parent

3-alkylindoles

Alternative Parents

Substituents

3-alkylindole
Anisole
Alkyl aryl ether
Aryl chloride
Aryl halide
Substituted pyrrole
Benzenoid
Heteroaromatic compound
Pyrrole
Carboximidic acid
Carboximidic acid derivative
Ether
Azacycle
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Organohalogen compound
Organic oxygen compound
Organochloride
Organonitrogen compound
Organooxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	2.48	ALOGPS
logP	1.75	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	15.29	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	54.12 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	71.08 m³·mol⁻¹	ChemAxon
Polarizability	27.76 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	159.868	30932474
DeepCCS	[M-H]-	157.51	30932474
DeepCCS	[M-2H]-	190.396	30932474
DeepCCS	[M+Na]+	165.961	30932474
AllCCS	[M+H]+	158.5	32859911
AllCCS	[M+H-H2O]+	154.9	32859911
AllCCS	[M+NH4]+	161.9	32859911
AllCCS	[M+Na]+	162.8	32859911
AllCCS	[M-H]-	162.0	32859911
AllCCS	[M+Na-2H]-	162.0	32859911
AllCCS	[M+HCOO]-	162.2	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Predicted by Siyang on May 30, 2022	12.2527 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.56 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	1662.2 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	339.8 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	148.0 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	187.5 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	125.0 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	425.3 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	443.6 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	77.2 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	935.1 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	445.4 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1407.1 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	366.3 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	321.3 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	336.1 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	182.2 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	17.9 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
6-Chloromelatonin	COC1=C(Cl)C=C2NC=C(CCNC(C)=O)C2=C1	3548.0	Standard polar	33892256
6-Chloromelatonin	COC1=C(Cl)C=C2NC=C(CCNC(C)=O)C2=C1	2537.5	Standard non polar	33892256
6-Chloromelatonin	COC1=C(Cl)C=C2NC=C(CCNC(C)=O)C2=C1	2639.3	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
6-Chloromelatonin,1TMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C)C=C2CCNC(C)=O	2625.4	Semi standard non polar	33892256
6-Chloromelatonin,1TMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C)C=C2CCNC(C)=O	2503.2	Standard non polar	33892256
6-Chloromelatonin,1TMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C)C=C2CCNC(C)=O	3074.8	Standard polar	33892256
6-Chloromelatonin,1TMS,isomer #2	COC1=CC2=C(C=C1Cl)[NH]C=C2CCN(C(C)=O)[Si](C)(C)C	2526.4	Semi standard non polar	33892256
6-Chloromelatonin,1TMS,isomer #2	COC1=CC2=C(C=C1Cl)[NH]C=C2CCN(C(C)=O)[Si](C)(C)C	2555.5	Standard non polar	33892256
6-Chloromelatonin,1TMS,isomer #2	COC1=CC2=C(C=C1Cl)[NH]C=C2CCN(C(C)=O)[Si](C)(C)C	3094.6	Standard polar	33892256
6-Chloromelatonin,2TMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C)C=C2CCN(C(C)=O)[Si](C)(C)C	2554.5	Semi standard non polar	33892256
6-Chloromelatonin,2TMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C)C=C2CCN(C(C)=O)[Si](C)(C)C	2659.0	Standard non polar	33892256
6-Chloromelatonin,2TMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C)C=C2CCN(C(C)=O)[Si](C)(C)C	2777.4	Standard polar	33892256
6-Chloromelatonin,1TBDMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C(C)(C)C)C=C2CCNC(C)=O	2856.4	Semi standard non polar	33892256
6-Chloromelatonin,1TBDMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C(C)(C)C)C=C2CCNC(C)=O	2675.8	Standard non polar	33892256
6-Chloromelatonin,1TBDMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C(C)(C)C)C=C2CCNC(C)=O	3109.9	Standard polar	33892256
6-Chloromelatonin,1TBDMS,isomer #2	COC1=CC2=C(C=C1Cl)[NH]C=C2CCN(C(C)=O)[Si](C)(C)C(C)(C)C	2764.5	Semi standard non polar	33892256
6-Chloromelatonin,1TBDMS,isomer #2	COC1=CC2=C(C=C1Cl)[NH]C=C2CCN(C(C)=O)[Si](C)(C)C(C)(C)C	2751.5	Standard non polar	33892256
6-Chloromelatonin,1TBDMS,isomer #2	COC1=CC2=C(C=C1Cl)[NH]C=C2CCN(C(C)=O)[Si](C)(C)C(C)(C)C	3130.8	Standard polar	33892256
6-Chloromelatonin,2TBDMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C(C)(C)C)C=C2CCN(C(C)=O)[Si](C)(C)C(C)(C)C	2993.3	Semi standard non polar	33892256
6-Chloromelatonin,2TBDMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C(C)(C)C)C=C2CCN(C(C)=O)[Si](C)(C)C(C)(C)C	3028.2	Standard non polar	33892256
6-Chloromelatonin,2TBDMS,isomer #1	COC1=CC2=C(C=C1Cl)N([Si](C)(C)C(C)(C)C)C=C2CCN(C(C)=O)[Si](C)(C)C(C)(C)C	2937.7	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 6-Chloromelatonin GC-MS (Non-derivatized) - 70eV, Positive	splash10-006x-9270000000-d287f5121ade3b50f204	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 6-Chloromelatonin GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6-Chloromelatonin 10V, Positive-QTOF	splash10-0a4i-0090000000-583da85af48c9380ebed	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6-Chloromelatonin 20V, Positive-QTOF	splash10-0a4i-0090000000-0d208b4e0e1ee653b590	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6-Chloromelatonin 40V, Positive-QTOF	splash10-05di-0910000000-c396dea35331efc6321a	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6-Chloromelatonin 10V, Negative-QTOF	splash10-014i-0090000000-b8b04dcba5afdf28d988	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6-Chloromelatonin 20V, Negative-QTOF	splash10-0a4i-9100000000-194d4a498645b711d151	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6-Chloromelatonin 40V, Negative-QTOF	splash10-001i-9400000000-cb55efaa38f741cc6508	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

1790

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

1858

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for 6-Chloromelatonin (HMDB0247048)

MOL for HMDB0247048 (6-Chloromelatonin)

3D MOL for HMDB0247048 (6-Chloromelatonin)

3D SDF for HMDB0247048 (6-Chloromelatonin)

3D-SDF for HMDB0247048 (6-Chloromelatonin)

PDB for HMDB0247048 (6-Chloromelatonin)

3D PDB for HMDB0247048 (6-Chloromelatonin)

SMILES for HMDB0247048 (6-Chloromelatonin)

INCHI for HMDB0247048 (6-Chloromelatonin)

Structure for HMDB0247048 (6-Chloromelatonin)

3D Structure for HMDB0247048 (6-Chloromelatonin)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra