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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 00:15:49 UTC
Update Date2021-09-26 22:56:50 UTC
HMDB IDHMDB0247255
Secondary Accession NumbersNone
Metabolite Identification
Common Name7-Hydroxy granisetron
Description7-Hydroxy granisetron belongs to the class of organic compounds known as indazole-3-carboxamides. These are aromatic compounds containing an indazole ring system that is substituted at the 3-position with a carboxamide group. Based on a literature review very few articles have been published on 7-Hydroxy granisetron. This compound has been identified in human blood as reported by (PMID: 31557052 ). 7-hydroxy granisetron is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 7-Hydroxy granisetron is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
7-Hydroxy-1-methyl-N-{9-methyl-9-azabicyclo[3.3.1]nonan-3-yl}-1H-indazole-3-carboximidateHMDB
7-Hydroxy-1-methyl-N-(endo-9-methyl-9-azabicyclo(3.3.1)non-3-yl)-1H-indazole-3-carboxamideHMDB
Chemical FormulaC18H24N4O2
Average Molecular Weight328.416
Monoisotopic Molecular Weight328.189926029
IUPAC Name7-hydroxy-1-methyl-N-{9-methyl-9-azabicyclo[3.3.1]nonan-3-yl}-1H-indazole-3-carboxamide
Traditional Name7-hydroxy-1-methyl-N-{9-methyl-9-azabicyclo[3.3.1]nonan-3-yl}indazole-3-carboxamide
CAS Registry NumberNot Available
SMILES
CN1N=C(C(=O)NC2CC3CCCC(C2)N3C)C2=C1C(O)=CC=C2
InChI Identifier
InChI=1S/C18H24N4O2/c1-21-12-5-3-6-13(21)10-11(9-12)19-18(24)16-14-7-4-8-15(23)17(14)22(2)20-16/h4,7-8,11-13,23H,3,5-6,9-10H2,1-2H3,(H,19,24)
InChI KeyAJEBHUMZPBDLQF-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as indazole-3-carboxamides. These are aromatic compounds containing an indazole ring system that is substituted at the 3-position with a carboxamide group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrazoles
Sub ClassIndazoles
Direct ParentIndazole-3-carboxamides
Alternative Parents
Substituents
  • Indazole-3-carboxamide
  • 2-heteroaryl carboxamide
  • Pyrazole-5-carboxamide
  • Phenol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Piperidine
  • Benzenoid
  • Azole
  • Pyrazole
  • Heteroaromatic compound
  • Amino acid or derivatives
  • Carboxamide group
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary carboxylic acid amide
  • Carboxylic acid derivative
  • Azacycle
  • Amine
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.34ALOGPS
logP1.02ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)9.37ChemAxon
pKa (Strongest Basic)8.74ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area70.39 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity103.81 m³·mol⁻¹ChemAxon
Polarizability35.81 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+175.62630932474
DeepCCS[M-H]-173.26830932474
DeepCCS[M-2H]-206.69830932474
DeepCCS[M+Na]+181.97130932474
AllCCS[M+H]+181.632859911
AllCCS[M+H-H2O]+178.732859911
AllCCS[M+NH4]+184.332859911
AllCCS[M+Na]+185.032859911
AllCCS[M-H]-179.832859911
AllCCS[M+Na-2H]-179.732859911
AllCCS[M+HCOO]-179.832859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202210.4868 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.74 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1536.8 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid199.5 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid150.7 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid170.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid90.6 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid273.5 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid334.4 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)517.8 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid796.0 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid358.9 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1070.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid193.8 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid284.9 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate626.0 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA503.7 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water138.0 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
7-Hydroxy granisetronCN1N=C(C(=O)NC2CC3CCCC(C2)N3C)C2=C1C(O)=CC=C23222.9Standard polar33892256
7-Hydroxy granisetronCN1N=C(C(=O)NC2CC3CCCC(C2)N3C)C2=C1C(O)=CC=C22971.9Standard non polar33892256
7-Hydroxy granisetronCN1N=C(C(=O)NC2CC3CCCC(C2)N3C)C2=C1C(O)=CC=C23111.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
7-Hydroxy granisetron,2TMS,isomer #1CN1C2CCCC1CC(N(C(=O)C1=NN(C)C3=C(O[Si](C)(C)C)C=CC=C13)[Si](C)(C)C)C22925.2Semi standard non polar33892256
7-Hydroxy granisetron,2TMS,isomer #1CN1C2CCCC1CC(N(C(=O)C1=NN(C)C3=C(O[Si](C)(C)C)C=CC=C13)[Si](C)(C)C)C22878.8Standard non polar33892256
7-Hydroxy granisetron,2TMS,isomer #1CN1C2CCCC1CC(N(C(=O)C1=NN(C)C3=C(O[Si](C)(C)C)C=CC=C13)[Si](C)(C)C)C23802.5Standard polar33892256
7-Hydroxy granisetron,2TBDMS,isomer #1CN1C2CCCC1CC(N(C(=O)C1=NN(C)C3=C(O[Si](C)(C)C(C)(C)C)C=CC=C13)[Si](C)(C)C(C)(C)C)C23310.6Semi standard non polar33892256
7-Hydroxy granisetron,2TBDMS,isomer #1CN1C2CCCC1CC(N(C(=O)C1=NN(C)C3=C(O[Si](C)(C)C(C)(C)C)C=CC=C13)[Si](C)(C)C(C)(C)C)C23311.1Standard non polar33892256
7-Hydroxy granisetron,2TBDMS,isomer #1CN1C2CCCC1CC(N(C(=O)C1=NN(C)C3=C(O[Si](C)(C)C(C)(C)C)C=CC=C13)[Si](C)(C)C(C)(C)C)C23911.9Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy granisetron GC-MS (Non-derivatized) - 70eV, Positivesplash10-03ka-4923000000-40e342702ea5e30f6d922021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy granisetron GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy granisetron GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy granisetron GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy granisetron GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy granisetron GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy granisetron 10V, Positive-QTOFsplash10-004i-0009000000-764f98249dcab2b4ea512021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy granisetron 20V, Positive-QTOFsplash10-004i-0009000000-f852830f17610df19ea72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy granisetron 40V, Positive-QTOFsplash10-00di-1911000000-412228c9494ea5ac10152021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy granisetron 10V, Negative-QTOFsplash10-004i-0009000000-e9f7bb9e953058a9c7e62021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy granisetron 20V, Negative-QTOFsplash10-004i-1119000000-f53512af11e8c6ca0e0b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy granisetron 40V, Negative-QTOFsplash10-00l7-5911000000-1cd6a860621893d978ec2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID7994572
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9818823
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]