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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 03:32:38 UTC
Update Date2021-09-26 22:59:40 UTC
HMDB IDHMDB0249058
Secondary Accession NumbersNone
Metabolite Identification
Common NameBenzoylstaurosporine
DescriptionN-Benzoylstaurosporine, also known as midostaurin or PKC 412, belongs to the class of organic compounds known as indolocarbazoles. These are polycyclic aromatic compounds containing an indole fused to a carbazole. N-Benzoylstaurosporine is an extremely weak basic (essentially neutral) compound (based on its pKa). This compound has been identified in human blood as reported by (PMID: 31557052 ). Benzoylstaurosporine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Benzoylstaurosporine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
MidostaurinMeSH
PKC 412MeSH
N-((9S,10R,11R,13R)-10-Methoxy-9-methyl-1-oxo-2,3,10,11,12,13-hexahydro-9,13-epoxy-1H,9H-diindolo(1,2,3-gh:3',2',1'-LM)pyrrolo(3,4-J)(1,7)benzodiazonin-11-yl)-N-methylbenzamideMeSH
PKC-412MeSH
4'-N-Benzoyl staurosporineMeSH
BenzoylstaurosporineMeSH
4'-N-BenzoylstaurosporineMeSH
Chemical FormulaC35H30N4O4
Average Molecular Weight570.649
Monoisotopic Molecular Weight570.226705462
IUPAC NameN-{3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.1²,⁶.0⁷,²⁸.0⁸,¹³.0¹⁵,¹⁹.0²⁰,²⁷.0²¹,²⁶]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl}-N-methylbenzamide
Traditional NameN-{3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.1²,⁶.0⁷,²⁸.0⁸,¹³.0¹⁵,¹⁹.0²⁰,²⁷.0²¹,²⁶]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl}-N-methylbenzamide
CAS Registry NumberNot Available
SMILES
COC1C(CC2OC1(C)N1C3=CC=CC=C3C3=C4CNC(=O)C4=C4C5=CC=CC=C5N2C4=C13)N(C)C(=O)C1=CC=CC=C1
InChI Identifier
InChI=1S/C35H30N4O4/c1-35-32(42-3)25(37(2)34(41)19-11-5-4-6-12-19)17-26(43-35)38-23-15-9-7-13-20(23)28-29-22(18-36-33(29)40)27-21-14-8-10-16-24(21)39(35)31(27)30(28)38/h4-16,25-26,32H,17-18H2,1-3H3,(H,36,40)
InChI KeyBMGQWWVMWDBQGC-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as indolocarbazoles. These are polycyclic aromatic compounds containing an indole fused to a carbazole.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassCarbazoles
Direct ParentIndolocarbazoles
Alternative Parents
Substituents
  • Indolocarbazole
  • Pyrrolo[2,3-a]carbazole
  • Pyrroloindole
  • Isoindolone
  • Benzamide
  • Benzoic acid or derivatives
  • Isoindole or derivatives
  • Isoindoline
  • Indole
  • Benzoyl
  • Monocyclic benzene moiety
  • Oxane
  • Benzenoid
  • Pyrrole
  • Heteroaromatic compound
  • Tertiary carboxylic acid amide
  • Lactam
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Carboxylic acid derivative
  • Dialkyl ether
  • Ether
  • Oxacycle
  • Azacycle
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.52ALOGPS
logP5.43ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)13.45ChemAxon
pKa (Strongest Basic)-0.83ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area77.73 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity162.61 m³·mol⁻¹ChemAxon
Polarizability61.67 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-266.78530932474
DeepCCS[M+Na]+241.21930932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Benzoylstaurosporine,1TMS,isomer #1COC1C(N(C)C(=O)C2=CC=CC=C2)CC2OC1(C)N1C3=CC=CC=C3C3=C4CN([Si](C)(C)C)C(=O)C4=C4C5=CC=CC=C5N2C4=C315000.0Semi standard non polar33892256
Benzoylstaurosporine,1TMS,isomer #1COC1C(N(C)C(=O)C2=CC=CC=C2)CC2OC1(C)N1C3=CC=CC=C3C3=C4CN([Si](C)(C)C)C(=O)C4=C4C5=CC=CC=C5N2C4=C314283.7Standard non polar33892256
Benzoylstaurosporine,1TMS,isomer #1COC1C(N(C)C(=O)C2=CC=CC=C2)CC2OC1(C)N1C3=CC=CC=C3C3=C4CN([Si](C)(C)C)C(=O)C4=C4C5=CC=CC=C5N2C4=C315774.5Standard polar33892256
Benzoylstaurosporine,1TBDMS,isomer #1COC1C(N(C)C(=O)C2=CC=CC=C2)CC2OC1(C)N1C3=CC=CC=C3C3=C4CN([Si](C)(C)C(C)(C)C)C(=O)C4=C4C5=CC=CC=C5N2C4=C315161.8Semi standard non polar33892256
Benzoylstaurosporine,1TBDMS,isomer #1COC1C(N(C)C(=O)C2=CC=CC=C2)CC2OC1(C)N1C3=CC=CC=C3C3=C4CN([Si](C)(C)C(C)(C)C)C(=O)C4=C4C5=CC=CC=C5N2C4=C314492.3Standard non polar33892256
Benzoylstaurosporine,1TBDMS,isomer #1COC1C(N(C)C(=O)C2=CC=CC=C2)CC2OC1(C)N1C3=CC=CC=C3C3=C4CN([Si](C)(C)C(C)(C)C)C(=O)C4=C4C5=CC=CC=C5N2C4=C315843.7Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Benzoylstaurosporine 10V, Positive-QTOFsplash10-00di-0200090000-960992e9dc3ce3825eaa2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Benzoylstaurosporine 20V, Positive-QTOFsplash10-00di-0201490000-5b93d650c600fb8c6c302021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Benzoylstaurosporine 40V, Positive-QTOFsplash10-01t9-6317190000-a98c2afdd78c7ecc57e32021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Benzoylstaurosporine 10V, Negative-QTOFsplash10-014i-0000090000-a45d758b9cacf5e86a5d2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Benzoylstaurosporine 20V, Negative-QTOFsplash10-00or-0206090000-d341d105a4840a2c69002021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Benzoylstaurosporine 40V, Negative-QTOFsplash10-004i-6109810000-f5306763532008c7a6252021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound16760627
PDB IDNot Available
ChEBI ID91464
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]