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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 08:56:48 UTC
Update Date2021-09-26 23:03:39 UTC
HMDB IDHMDB0251580
Secondary Accession NumbersNone
Metabolite Identification
Common NameDolutegravir
DescriptionDolutegravir belongs to the class of organic compounds known as pyridinecarboxylic acids and derivatives. Pyridinecarboxylic acids and derivatives are compounds containing a pyridine ring bearing a carboxylic acid group or a derivative thereof. Based on a literature review a significant number of articles have been published on Dolutegravir. This compound has been identified in human blood as reported by (PMID: 31557052 ). Dolutegravir is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Dolutegravir is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC20H19F2N3O5
Average Molecular Weight419.385
Monoisotopic Molecular Weight419.12927705
IUPAC NameN-[(2,4-difluorophenyl)methyl]-11-hydroxy-7-methyl-9,12-dioxo-4-oxa-1,8-diazatricyclo[8.4.0.0^{3,8}]tetradeca-10,13-diene-13-carboxamide
Traditional NameN-[(2,4-difluorophenyl)methyl]-11-hydroxy-7-methyl-9,12-dioxo-4-oxa-1,8-diazatricyclo[8.4.0.0^{3,8}]tetradeca-10,13-diene-13-carboxamide
CAS Registry NumberNot Available
SMILES
CC1CCOC2CN3C=C(C(=O)NCC4=C(F)C=C(F)C=C4)C(=O)C(O)=C3C(=O)N12
InChI Identifier
InChI=1S/C20H19F2N3O5/c1-10-4-5-30-15-9-24-8-13(17(26)18(27)16(24)20(29)25(10)15)19(28)23-7-11-2-3-12(21)6-14(11)22/h2-3,6,8,10,15,27H,4-5,7,9H2,1H3,(H,23,28)
InChI KeyRHWKPHLQXYSBKR-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyridinecarboxylic acids and derivatives. Pyridinecarboxylic acids and derivatives are compounds containing a pyridine ring bearing a carboxylic acid group or a derivative thereof.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridines and derivatives
Sub ClassPyridinecarboxylic acids and derivatives
Direct ParentPyridinecarboxylic acids and derivatives
Alternative Parents
Substituents
  • Pyridine carboxylic acid or derivatives
  • 2-heteroaryl carboxamide
  • Halobenzene
  • Hydroxypyridine
  • Fluorobenzene
  • 1,3-oxazinane
  • Aryl fluoride
  • Aryl halide
  • Monocyclic benzene moiety
  • Oxazinane
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous amide
  • Tertiary carboxylic acid amide
  • Vinylogous acid
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Tertiary amine
  • Lactam
  • Cyclic ketone
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Carboxylic acid derivative
  • Organooxygen compound
  • Organic oxygen compound
  • Amine
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organonitrogen compound
  • Organofluoride
  • Organohalogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.98ALOGPS
logP1.1ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)10.1ChemAxon
pKa (Strongest Basic)-0.51ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area99.18 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity102.77 m³·mol⁻¹ChemAxon
Polarizability40 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-225.54230932474
DeepCCS[M+Na]+201.20130932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
DolutegravirCC1CCOC2CN3C=C(C(=O)NCC4=C(F)C=C(F)C=C4)C(=O)C(O)=C3C(=O)N124146.7Standard polar33892256
DolutegravirCC1CCOC2CN3C=C(C(=O)NCC4=C(F)C=C(F)C=C4)C(=O)C(O)=C3C(=O)N123260.7Standard non polar33892256
DolutegravirCC1CCOC2CN3C=C(C(=O)NCC4=C(F)C=C(F)C=C4)C(=O)C(O)=C3C(=O)N123576.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Dolutegravir,2TMS,isomer #1CC1CCOC2CN3C=C(C(=O)N(CC4=CC=C(F)C=C4F)[Si](C)(C)C)C(=O)C(O[Si](C)(C)C)=C3C(=O)N123306.2Semi standard non polar33892256
Dolutegravir,2TMS,isomer #1CC1CCOC2CN3C=C(C(=O)N(CC4=CC=C(F)C=C4F)[Si](C)(C)C)C(=O)C(O[Si](C)(C)C)=C3C(=O)N123282.7Standard non polar33892256
Dolutegravir,2TMS,isomer #1CC1CCOC2CN3C=C(C(=O)N(CC4=CC=C(F)C=C4F)[Si](C)(C)C)C(=O)C(O[Si](C)(C)C)=C3C(=O)N124019.4Standard polar33892256
Dolutegravir,2TBDMS,isomer #1CC1CCOC2CN3C=C(C(=O)N(CC4=CC=C(F)C=C4F)[Si](C)(C)C(C)(C)C)C(=O)C(O[Si](C)(C)C(C)(C)C)=C3C(=O)N123677.2Semi standard non polar33892256
Dolutegravir,2TBDMS,isomer #1CC1CCOC2CN3C=C(C(=O)N(CC4=CC=C(F)C=C4F)[Si](C)(C)C(C)(C)C)C(=O)C(O[Si](C)(C)C(C)(C)C)=C3C(=O)N123674.4Standard non polar33892256
Dolutegravir,2TBDMS,isomer #1CC1CCOC2CN3C=C(C(=O)N(CC4=CC=C(F)C=C4F)[Si](C)(C)C(C)(C)C)C(=O)C(O[Si](C)(C)C(C)(C)C)=C3C(=O)N124143.8Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Dolutegravir GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-9826300000-e97f3e046e7a76cef2c32021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dolutegravir GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dolutegravir GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dolutegravir GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dolutegravir GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dolutegravir GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dolutegravir 10V, Positive-QTOFsplash10-00di-0000900000-b90f199dc655f84926672021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dolutegravir 20V, Positive-QTOFsplash10-004i-0090200000-bfeb2c73b9cc785b00812021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dolutegravir 40V, Positive-QTOFsplash10-004i-0692000000-1761b017b2e4556fc2072021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dolutegravir 10V, Negative-QTOFsplash10-014i-0031900000-d5c156a37f60f3c092aa2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dolutegravir 20V, Negative-QTOFsplash10-00kg-1579400000-1d3c659affed5dc4a4cc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dolutegravir 40V, Negative-QTOFsplash10-0006-4963100000-621355069efcdf99de8b2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID29394246
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkDolutegravir
METLIN IDNot Available
PubChem Compound57414794
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]