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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 11:47:16 UTC
Update Date2021-09-26 23:06:32 UTC
HMDB IDHMDB0253370
Secondary Accession NumbersNone
Metabolite Identification
Common Name1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-
Description1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-, also known as I cyanopindolol or ICYP, belongs to the class of organic compounds known as indoles. Indoles are compounds containing an indole moiety, which consists of pyrrole ring fused to benzene to form 2,3-benzopyrrole. Based on a literature review very few articles have been published on 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-. This compound has been identified in human blood as reported by (PMID: 31557052 ). 1h-indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
I cyanopindololHMDB
I-cyanopindololHMDB
ICYPHMDB
IodocyanopindololHMDB
Chemical FormulaC15H18IN3O2
Average Molecular Weight399.232
Monoisotopic Molecular Weight399.04437
IUPAC Name4-{2-hydroxy-3-[(propan-2-yl)amino]propoxy}-3-iodo-1H-indole-2-carbonitrile
Traditional Name4-[2-hydroxy-3-(isopropylamino)propoxy]-3-iodo-1H-indole-2-carbonitrile
CAS Registry NumberNot Available
SMILES
CC(C)NCC(O)COC1=CC=CC2=C1C(I)=C(N2)C#N
InChI Identifier
InChI=1S/C15H18IN3O2/c1-9(2)18-7-10(20)8-21-13-5-3-4-11-14(13)15(16)12(6-17)19-11/h3-5,9-10,18-20H,7-8H2,1-2H3
InChI KeyWGSPBWSPJOBKNT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as indoles. Indoles are compounds containing an indole moiety, which consists of pyrrole ring fused to benzene to form 2,3-benzopyrrole.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassIndoles
Direct ParentIndoles
Alternative Parents
Substituents
  • Indole
  • Alkyl aryl ether
  • Aryl halide
  • Aryl iodide
  • Substituted pyrrole
  • Benzenoid
  • Heteroaromatic compound
  • Pyrrole
  • 1,2-aminoalcohol
  • Secondary alcohol
  • Azacycle
  • Secondary aliphatic amine
  • Ether
  • Carbonitrile
  • Nitrile
  • Secondary amine
  • Organopnictogen compound
  • Organic oxygen compound
  • Amine
  • Hydrocarbon derivative
  • Alcohol
  • Organohalogen compound
  • Organoiodide
  • Organonitrogen compound
  • Organooxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.23ALOGPS
logP2.3ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)11.63ChemAxon
pKa (Strongest Basic)9.66ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area81.07 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity90.42 m³·mol⁻¹ChemAxon
Polarizability35.31 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+178.76530932474
DeepCCS[M-H]-176.40730932474
DeepCCS[M-2H]-209.6330932474
DeepCCS[M+Na]+184.85830932474
AllCCS[M+H]+183.332859911
AllCCS[M+H-H2O]+180.632859911
AllCCS[M+NH4]+185.732859911
AllCCS[M+Na]+186.432859911
AllCCS[M-H]-178.732859911
AllCCS[M+Na-2H]-179.532859911
AllCCS[M+HCOO]-180.432859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202211.1267 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.7 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1644.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid244.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid102.4 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid170.8 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid87.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid333.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid350.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)191.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid706.6 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid374.5 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1132.3 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid238.2 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid243.4 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate420.0 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA243.0 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water156.1 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-CC(C)NCC(O)COC1=CC=CC2=C1C(I)=C(N2)C#N3409.7Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-CC(C)NCC(O)COC1=CC=CC2=C1C(I)=C(N2)C#N2716.9Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-CC(C)NCC(O)COC1=CC=CC2=C1C(I)=C(N2)C#N3001.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)[NH]2)O[Si](C)(C)C)[Si](C)(C)C2929.5Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)[NH]2)O[Si](C)(C)C)[Si](C)(C)C2656.1Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)[NH]2)O[Si](C)(C)C)[Si](C)(C)C3511.6Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #2CC(C)NCC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)O[Si](C)(C)C2815.6Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #2CC(C)NCC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)O[Si](C)(C)C2581.9Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #2CC(C)NCC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)O[Si](C)(C)C3091.8Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #3CC(C)N(CC(O)COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)[Si](C)(C)C2912.0Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #3CC(C)N(CC(O)COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)[Si](C)(C)C2659.7Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TMS,isomer #3CC(C)N(CC(O)COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)[Si](C)(C)C3217.4Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,3TMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C2984.1Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,3TMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C2674.2Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,3TMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C2993.2Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)[NH]2)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3433.6Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)[NH]2)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3077.5Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)[NH]2)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3618.0Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #2CC(C)NCC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3212.6Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #2CC(C)NCC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2983.0Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #2CC(C)NCC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3236.6Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #3CC(C)N(CC(O)COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3397.6Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #3CC(C)N(CC(O)COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3040.2Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,2TBDMS,isomer #3CC(C)N(CC(O)COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3336.8Standard polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,3TBDMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3617.1Semi standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,3TBDMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3235.0Standard non polar33892256
1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo-,3TBDMS,isomer #1CC(C)N(CC(COC1=CC=CC2=C1C(I)=C(C#N)N2[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3215.3Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (Non-derivatized) - 70eV, Positivesplash10-0089-9261000000-7cb4a7c3a0377ea81a7f2021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- 10V, Negative-QTOFsplash10-0002-0039000000-631d95da14977c9541cb2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- 20V, Negative-QTOFsplash10-001i-0190000000-ce96ce6f8b4e0286a2162021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- 40V, Negative-QTOFsplash10-0a59-9461000000-dedf576056a96c2d20472021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- 10V, Positive-QTOFsplash10-0udi-0000900000-3d7e7fe7aa939756675e2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- 20V, Positive-QTOFsplash10-0zmj-9128600000-4dc99da234700264abc72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Indole-2-carbonitrile, 4-(2-hydroxy-3-((1-methylethyl)amino)propoxy)-3-iodo- 40V, Positive-QTOFsplash10-0ab9-9100000000-699ffb3f06db83bad7b22021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID61882
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound68618
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]